mRNA_Ecto-sp8_S_contig95881.31233.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp8_S_contig95881.31233.1
Unique Name	mRNA_Ecto-sp8_S_contig95881.31233.1
Type	mRNA
Organism	Ectocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)

Homology

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BLAST of mRNA_Ecto-sp8_S_contig95881.31233.1 vs. uniprot
Match: A0A0F9YYV1_9ZZZZ (BAAT_C domain-containing protein n=20 Tax=root TaxID=1 RepID=A0A0F9YYV1_9ZZZZ)

HSP 1 Score: 251 bits (640), Expect = 1.840e-82
Identity = 114/128 (89.06%), Postives = 118/128 (92.19%), Query Frame = 1

Query:    4 GMPDAIAAHSPPDVICSAFDARNFRDAGDPGWQAWDVSKRAWTWQRSHEGLLPTTPIEIERYSGPLLFTHGTKDRMWSVEMTKRLEKRLRGHGCDPEVHYYEGEDHIPSSAGQNTHNQLLLDFFSKHL 387
            GMPDAIAAHSPPDV+C AFDAR+FRDAGDPGWQAWDVSKRAWTWQ SHEGLLPTTPIEIERY GPLL +HGTKDRMWSVEMTKRLE+RLR HG  PEVHYYEGEDHIPSSAGQN H QLLLDFFS HL
Sbjct:  119 GMPDAIAAHSPPDVVCGAFDARSFRDAGDPGWQAWDVSKRAWTWQGSHEGLLPTTPIEIERYPGPLLLSHGTKDRMWSVEMTKRLEQRLRKHGRSPEVHYYEGEDHIPSSAGQNIHYQLLLDFFSNHL 246

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BLAST of mRNA_Ecto-sp8_S_contig95881.31233.1 vs. uniprot
Match: UPI001F0B21CE (prolyl oligopeptidase family serine peptidase n=1 Tax=Halomonas sp. SH5A2 TaxID=2749040 RepID=UPI001F0B21CE)

HSP 1 Score: 238 bits (606), Expect = 6.450e-79
Identity = 108/128 (84.38%), Postives = 113/128 (88.28%), Query Frame = 1

Query:    4 GMPDAIAAHSPPDVICSAFDARNFRDAGDPGWQAWDVSKRAWTWQRSHEGLLPTTPIEIERYSGPLLFTHGTKDRMWSVEMTKRLEKRLRGHGCDPEVHYYEGEDHIPSSAGQNTHNQLLLDFFSKHL 387
            G PDAIAAHSPPDV+C AFDAR FRDAGDPGWQAWDVSKRAWTWQ SHEGLLPTTPIEIERY GPL  +HGT+DRMWSVEMT RLEKRL  HG  PEVHYYEGEDHIPSSA QN H +LL+DFFSKHL
Sbjct:    9 GAPDAIAAHSPPDVVCGAFDARGFRDAGDPGWQAWDVSKRAWTWQGSHEGLLPTTPIEIERYPGPLFLSHGTQDRMWSVEMTTRLEKRLIKHGRSPEVHYYEGEDHIPSSACQNKHYELLMDFFSKHL 136

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BLAST of mRNA_Ecto-sp8_S_contig95881.31233.1 vs. uniprot
Match: A0A2N1AIV6_9GAMM (Thioesterase n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A2N1AIV6_9GAMM)

HSP 1 Score: 241 bits (616), Expect = 8.760e-79
Identity = 108/128 (84.38%), Postives = 115/128 (89.84%), Query Frame = 1

Query:    4 GMPDAIAAHSPPDVICSAFDARNFRDAGDPGWQAWDVSKRAWTWQRSHEGLLPTTPIEIERYSGPLLFTHGTKDRMWSVEMTKRLEKRLRGHGCDPEVHYYEGEDHIPSSAGQNTHNQLLLDFFSKHL 387
            G PDAIAAHSPPDV+C AFDARNFRD GDPGWQAWDVSKRAWTW+ SHE LLPTTPIEIERY GPLL +HGTKDRMWSVEMTKRLE+RL  HG  PEVHYYEGEDHIPSS+GQN H++LLL FFSKHL
Sbjct:  124 GAPDAIAAHSPPDVVCGAFDARNFRDGGDPGWQAWDVSKRAWTWRNSHEDLLPTTPIEIERYPGPLLLSHGTKDRMWSVEMTKRLEERLHEHGRSPEVHYYEGEDHIPSSSGQNKHHELLLGFFSKHL 251

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BLAST of mRNA_Ecto-sp8_S_contig95881.31233.1 vs. uniprot
Match: A0A1A0EVM7_9GAMM (Thioesterase n=1 Tax=Halomonas sp. G11 TaxID=1684425 RepID=A0A1A0EVM7_9GAMM)

HSP 1 Score: 241 bits (614), Expect = 1.760e-78
Identity = 109/128 (85.16%), Postives = 116/128 (90.62%), Query Frame = 1

Query:    4 GMPDAIAAHSPPDVICSAFDARNFRDAGDPGWQAWDVSKRAWTWQRSHEGLLPTTPIEIERYSGPLLFTHGTKDRMWSVEMTKRLEKRLRGHGCDPEVHYYEGEDHIPSSAGQNTHNQLLLDFFSKHL 387
            G+PDAIAAHSPPDV+C AFDAR FRDAGDPGWQAWDVSKRAWTWQ SHEGLLPTTPIEIERY GPLL +HGT+DRMWSVEMTKRLEKRL  +G  PEVHYYEGEDHIPSSAGQN H +L+L FFSKHL
Sbjct:  124 GVPDAIAAHSPPDVVCGAFDARGFRDAGDPGWQAWDVSKRAWTWQGSHEGLLPTTPIEIERYPGPLLLSHGTQDRMWSVEMTKRLEKRLLKNGRSPEVHYYEGEDHIPSSAGQNKHYELILKFFSKHL 251

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BLAST of mRNA_Ecto-sp8_S_contig95881.31233.1 vs. uniprot
Match: A0A7Z7HWJ4_9GAMM (BAAT / Acyl-CoA thioester hydrolase C terminal n=1 Tax=Halomonas sp. hl-4 TaxID=1761789 RepID=A0A7Z7HWJ4_9GAMM)

HSP 1 Score: 238 bits (607), Expect = 2.040e-77
Identity = 105/128 (82.03%), Postives = 116/128 (90.62%), Query Frame = 1

Query:    4 GMPDAIAAHSPPDVICSAFDARNFRDAGDPGWQAWDVSKRAWTWQRSHEGLLPTTPIEIERYSGPLLFTHGTKDRMWSVEMTKRLEKRLRGHGCDPEVHYYEGEDHIPSSAGQNTHNQLLLDFFSKHL 387
            GMPDAIAAHSPPDV+C AFDAR FRD GDPGWQAWDVSKRAWTW+ S+EGLLPTTPIEIERY GPLL +HGTKDRMWSV MTKRLE+RLR HG +P+VHYYEGEDH+PSS+GQN H QLL++FF KHL
Sbjct:  124 GMPDAIAAHSPPDVVCGAFDARGFRDVGDPGWQAWDVSKRAWTWRDSYEGLLPTTPIEIERYPGPLLLSHGTKDRMWSVNMTKRLEERLRKHGRNPDVHYYEGEDHMPSSSGQNAHYQLLVEFFEKHL 251

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BLAST of mRNA_Ecto-sp8_S_contig95881.31233.1 vs. uniprot
Match: A0A455U9D8_9GAMM (BAAT_C domain-containing protein n=1 Tax=Halomonas sulfidaeris TaxID=115553 RepID=A0A455U9D8_9GAMM)

HSP 1 Score: 236 bits (601), Expect = 3.150e-77
Identity = 108/128 (84.38%), Postives = 114/128 (89.06%), Query Frame = 1

Query:    4 GMPDAIAAHSPPDVICSAFDARNFRDAGDPGWQAWDVSKRAWTWQRSHEGLLPTTPIEIERYSGPLLFTHGTKDRMWSVEMTKRLEKRLRGHGCDPEVHYYEGEDHIPSSAGQNTHNQLLLDFFSKHL 387
            GMPDAIAAHSPPD +C AFDAR+FRD GD GWQAWDVSKRAWTW+ SHEGLLPTT IEIERY GPLL +HGTKDRMWSVEMTKRLE+RLR HG  PEVHYYEGEDHIPSS+GQN H  LLLDFFSKHL
Sbjct:   73 GMPDAIAAHSPPDAVCGAFDARSFRDEGDLGWQAWDVSKRAWTWRDSHEGLLPTTTIEIERYLGPLLLSHGTKDRMWSVEMTKRLEQRLREHGRAPEVHYYEGEDHIPSSSGQNKHYGLLLDFFSKHL 200

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BLAST of mRNA_Ecto-sp8_S_contig95881.31233.1 vs. uniprot
Match: A0A0D6ED43_9GAMM (Putative thioesterase n=4 Tax=Halomonas TaxID=2745 RepID=A0A0D6ED43_9GAMM)

HSP 1 Score: 237 bits (605), Expect = 4.110e-77
Identity = 107/129 (82.95%), Postives = 115/129 (89.15%), Query Frame = 1

Query:    1 AGMPDAIAAHSPPDVICSAFDARNFRDAGDPGWQAWDVSKRAWTWQRSHEGLLPTTPIEIERYSGPLLFTHGTKDRMWSVEMTKRLEKRLRGHGCDPEVHYYEGEDHIPSSAGQNTHNQLLLDFFSKHL 387
            AG+PDAIAAHSPPD +C AFDAR+FRDAGDPGWQAWDVSKRAWTW+ SHEGLLPTTPIEIERY GPL  +HGT+DRMWSVEMTKRLE+RL  HG  PEVHYYEGEDHIPSSAGQN H +LLL FF KHL
Sbjct:  123 AGLPDAIAAHSPPDXVCGAFDARSFRDAGDPGWQAWDVSKRAWTWRDSHEGLLPTTPIEIERYPGPLFLSHGTQDRMWSVEMTKRLEQRLLKHGRSPEVHYYEGEDHIPSSAGQNKHYELLLGFFLKHL 251

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BLAST of mRNA_Ecto-sp8_S_contig95881.31233.1 vs. uniprot
Match: A0A511URF4_9GAMM (BAAT_C domain-containing protein n=2 Tax=Halomonadaceae TaxID=28256 RepID=A0A511URF4_9GAMM)

HSP 1 Score: 234 bits (598), Expect = 4.760e-76
Identity = 105/128 (82.03%), Postives = 112/128 (87.50%), Query Frame = 1

Query:    4 GMPDAIAAHSPPDVICSAFDARNFRDAGDPGWQAWDVSKRAWTWQRSHEGLLPTTPIEIERYSGPLLFTHGTKDRMWSVEMTKRLEKRLRGHGCDPEVHYYEGEDHIPSSAGQNTHNQLLLDFFSKHL 387
            G PDAIAAHSPPDV+C AFDAR FRD GDPGWQAWDVS+RAWTWQ SHEGLLPTTPIEIERY GPL  +HGT+DRMWS+EMTKRLEK LR +G  PEVHYYEGEDHIPSSAGQN H +LLL FF KHL
Sbjct:  124 GAPDAIAAHSPPDVVCGAFDARGFRDVGDPGWQAWDVSQRAWTWQNSHEGLLPTTPIEIERYPGPLFLSHGTQDRMWSIEMTKRLEKHLRENGGHPEVHYYEGEDHIPSSAGQNKHYELLLGFFLKHL 251

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BLAST of mRNA_Ecto-sp8_S_contig95881.31233.1 vs. uniprot
Match: A0A3Q8WJK2_9GAMM (Alpha/beta hydrolase n=5 Tax=Halomonas TaxID=2745 RepID=A0A3Q8WJK2_9GAMM)

HSP 1 Score: 234 bits (598), Expect = 5.590e-76
Identity = 107/128 (83.59%), Postives = 113/128 (88.28%), Query Frame = 1

Query:    4 GMPDAIAAHSPPDVICSAFDARNFRDAGDPGWQAWDVSKRAWTWQRSHEGLLPTTPIEIERYSGPLLFTHGTKDRMWSVEMTKRLEKRLRGHGCDPEVHYYEGEDHIPSSAGQNTHNQLLLDFFSKHL 387
            G PDAIA HS PDVIC AFDAR FRDAGDPGWQAWDVSKRAWTW  SHEGLLPTTPIEIERY GPLL +HGT+DRMWSVEMT+RLEKRLRGHG  P VHYY+GEDHIPSSAGQN H  LLLDFFS++L
Sbjct:  126 GAPDAIAVHSAPDVICGAFDARGFRDAGDPGWQAWDVSKRAWTWLDSHEGLLPTTPIEIERYPGPLLLSHGTEDRMWSVEMTRRLEKRLRGHGRKPAVHYYDGEDHIPSSAGQNIHYPLLLDFFSENL 253

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BLAST of mRNA_Ecto-sp8_S_contig95881.31233.1 vs. uniprot
Match: A0A651DL48_HALSX (Alpha/beta hydrolase (Fragment) n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A651DL48_HALSX)

HSP 1 Score: 231 bits (588), Expect = 2.910e-75
Identity = 104/129 (80.62%), Postives = 114/129 (88.37%), Query Frame = 1

Query:    1 AGMPDAIAAHSPPDVICSAFDARNFRDAGDPGWQAWDVSKRAWTWQRSHEGLLPTTPIEIERYSGPLLFTHGTKDRMWSVEMTKRLEKRLRGHGCDPEVHYYEGEDHIPSSAGQNTHNQLLLDFFSKHL 387
            AG+PDAIAAHSPPD +C AFDAR+FRDAGDPGWQAWDVSKRAWTWQ SHEGLLPTTPIEIERY GPL  +HGT+DRMWSVEMTKRLE+RL  HG  P+VHYYE EDHIPSSAGQN H  LLL+FF++ L
Sbjct:   68 AGLPDAIAAHSPPDAVCGAFDARSFRDAGDPGWQAWDVSKRAWTWQGSHEGLLPTTPIEIERYPGPLFLSHGTQDRMWSVEMTKRLEQRLLEHGRSPDVHYYESEDHIPSSAGQNRHYLLLLNFFTRCL 196

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp8_S_contig95881.31233.1 vs. uniprot

BLAST of mRNA_Ecto-sp8_S_contig95881.31233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0F9YYV1_9ZZZZ	1.840e-82	89.06	BAAT_C domain-containing protein n=20 Tax=root Tax...	[more]
UPI001F0B21CE	6.450e-79	84.38	prolyl oligopeptidase family serine peptidase n=1 ...	[more]
A0A2N1AIV6_9GAMM	8.760e-79	84.38	Thioesterase n=2 Tax=unclassified Halomonas TaxID=...	[more]
A0A1A0EVM7_9GAMM	1.760e-78	85.16	Thioesterase n=1 Tax=Halomonas sp. G11 TaxID=16844...	[more]
A0A7Z7HWJ4_9GAMM	2.040e-77	82.03	BAAT / Acyl-CoA thioester hydrolase C terminal n=1...	[more]
A0A455U9D8_9GAMM	3.150e-77	84.38	BAAT_C domain-containing protein n=1 Tax=Halomonas...	[more]
A0A0D6ED43_9GAMM	4.110e-77	82.95	Putative thioesterase n=4 Tax=Halomonas TaxID=2745...	[more]
A0A511URF4_9GAMM	4.760e-76	82.03	BAAT_C domain-containing protein n=2 Tax=Halomonad...	[more]
A0A3Q8WJK2_9GAMM	5.590e-76	83.59	Alpha/beta hydrolase n=5 Tax=Halomonas TaxID=2745 ...	[more]
A0A651DL48_HALSX	2.910e-75	80.62	Alpha/beta hydrolase (Fragment) n=1 Tax=Halomonas ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp8_S_contig95881	contig	Ecto-sp8_S_contig95881:3..398 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species8 EcLAC_412 OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Bacteria
Stop	1
Start	1
Seed ortholog score	246.5
Seed ortholog evalue	6.8e-63
Seed eggNOG ortholog	1380358.JADJ01000007_gene2910
Model size	396
Hectar predicted targeting category	other localisation
Exons	1
EggNOG free text desc.	BAAT / Acyl-CoA thioester hydrolase C terminal
EggNOG OGs	1R51X@1224,COG1073@1,COG1073@2
Cds size	390
COG Functional cat.	S
Best tax level	Proteobacteria
Best eggNOG OG	NA\|NA\|NA

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681145320.9111075-UTR-Ecto-sp8_S_contig95881:2..8	1681145320.9111075-UTR-Ecto-sp8_S_contig95881:2..8	Ectocarpus species8 EcLAC_412	UTR	Ecto-sp8_S_contig95881 3..8 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681145320.9320703-CDS-Ecto-sp8_S_contig95881:8..398	1681145320.9320703-CDS-Ecto-sp8_S_contig95881:8..398	Ectocarpus species8 EcLAC_412	CDS	Ecto-sp8_S_contig95881 9..398 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp8_S_contig95881.31233.1	prot_Ecto-sp8_S_contig95881.31233.1	Ectocarpus species8 EcLAC_412	polypeptide	Ecto-sp8_S_contig95881 9..398 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp8_S_contig95881:3..398+
coding sequence from alignment at Ecto-sp8_S_contig95881:3..398+

protein sequence of mRNA_Ecto-sp8_S_contig95881.31233.1

>prot_Ecto-sp8_S_contig95881.31233.1 ID=prot_Ecto-sp8_S_contig95881.31233.1|Name=mRNA_Ecto-sp8_S_contig95881.31233.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=130bp
MPDAIAAHSPPDVICSAFDARNFRDAGDPGWQAWDVSKRAWTWQRSHEGL
LPTTPIEIERYSGPLLFTHGTKDRMWSVEMTKRLEKRLRGHGCDPEVHYY
EGEDHIPSSAGQNTHNQLLLDFFSKHLND*

mRNA from alignment at Ecto-sp8_S_contig95881:3..398+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp8_S_contig95881.31233.1 ID=mRNA_Ecto-sp8_S_contig95881.31233.1|Name=mRNA_Ecto-sp8_S_contig95881.31233.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=396bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95881:3..398+ (Ectocarpus species8 EcLAC_412)
GCCGGTATGCCAGATGCTATCGCAGCACATAGCCCACCTGATGTAATTTG
CAGTGCCTTTGATGCGCGTAATTTTCGCGATGCGGGTGACCCAGGCTGGC
AAGCCTGGGACGTTAGTAAGCGCGCCTGGACGTGGCAAAGAAGCCATGAA
GGCTTATTGCCCACAACGCCGATTGAGATTGAACGCTACTCTGGCCCGCT
ATTGTTCACCCACGGCACGAAAGACCGCATGTGGTCAGTTGAAATGACCA
AGCGTTTGGAAAAACGTCTGCGTGGTCATGGCTGTGATCCTGAAGTGCAT
TACTACGAAGGCGAGGATCATATACCCAGTAGCGCAGGTCAGAATACTCA
TAACCAACTGTTGTTGGATTTCTTTTCAAAACATCTGAATGACTAA

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig95881:3..398+

>mRNA_Ecto-sp8_S_contig95881.31233.1 ID=mRNA_Ecto-sp8_S_contig95881.31233.1|Name=mRNA_Ecto-sp8_S_contig95881.31233.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95881:3..398+ (Ectocarpus species8 EcLAC_412)
ATGCCAGATGCTATCGCAGCACATAGCCCACCTGATGTAATTTGCAGTGC
CTTTGATGCGCGTAATTTTCGCGATGCGGGTGACCCAGGCTGGCAAGCCT
GGGACGTTAGTAAGCGCGCCTGGACGTGGCAAAGAAGCCATGAAGGCTTA
TTGCCCACAACGCCGATTGAGATTGAACGCTACTCTGGCCCGCTATTGTT
CACCCACGGCACGAAAGACCGCATGTGGTCAGTTGAAATGACCAAGCGTT
TGGAAAAACGTCTGCGTGGTCATGGCTGTGATCCTGAAGTGCATTACTAC
GAAGGCGAGGATCATATACCCAGTAGCGCAGGTCAGAATACTCATAACCA
ACTGTTGTTGGATTTCTTTTCAAAACATCTGAATGACTAA