mRNA_Ecto-sp8_S_contig95880.31232.1 (mRNA) Ectocarpus species8 EcLAC_412
|
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: D8LRP0_ECTSI (Amidohydro-rel domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRP0_ECTSI) HSP 1 Score: 114 bits (285), Expect = 2.840e-29 Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1
Query: 1 VWMHPCRPQSYADYDAYKG--SKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 159
VWMHPCRPQSYADYD+YKG SKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPG+
Sbjct: 159 VWMHPCRPQSYADYDSYKGEGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGL 213
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: A0A835Z1K2_9STRA (Amidohydro-rel domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K2_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.880e-24 Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 1
Query: 1 VWMHPCRPQSYADYDAY----KGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYP 153
VW+HPCRPQ+YADYD Y KGS HQIWN+FGWIYDTSVAMVHIAL GVFRRYP
Sbjct: 164 VWIHPCRPQNYADYDQYQREGKGSLHQIWNSFGWIYDTSVAMVHIALGGVFRRYP 218
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: A0A7S3UR03_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UR03_HETAK) HSP 1 Score: 94.0 bits (232), Expect = 6.730e-23 Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1
Query: 1 VWMHPCRPQSYADYDAYK--GSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 159
VW+HPCRPQ DYDAY+ GSK+QIWNT GWIYDTSVAMVHIA AGVF+R+P V
Sbjct: 6 VWLHPCRPQFVPDYDAYRAGGSKYQIWNTLGWIYDTSVAMVHIAQAGVFQRHPDV 60
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: W7TWC5_9STRA (Amidohydrolase 2 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWC5_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 7.870e-20 Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query: 1 VWMHPCRPQSYADYDAYKG---SKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 159
VW+HP RPQ Y DY+AY+G S HQIWNT GW+YDTSVAMVH+ +AGVF+RYP +
Sbjct: 200 VWLHPNRPQFYPDYEAYRGKGGSLHQIWNTLGWVYDTSVAMVHMVMAGVFQRYPNL 255
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: A0A3D3BJX0_9GAMM (Amidohydrolase (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D3BJX0_9GAMM) HSP 1 Score: 68.6 bits (166), Expect = 6.230e-13 Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query: 1 VWMHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYP 153
+WMHP R Q +ADY + S+++IW TFGW Y+TSVAM + +G+F RYP
Sbjct: 12 IWMHPARGQGFADYQSEDRSEYEIWWTFGWPYETSVAMARLVFSGMFDRYP 62
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: A0A3P4B6A3_9BURK (Amidohydrolase n=1 Tax=Pigmentiphaga humi TaxID=2478468 RepID=A0A3P4B6A3_9BURK) HSP 1 Score: 67.8 bits (164), Expect = 5.370e-12 Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 1 VWMHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 159
+W+HP R S+ADY A S ++IW GW ++TSVAM HIAL+G+F R+PG+
Sbjct: 157 IWLHPDREASHADYTAESKSHYEIWFAIGWPHETSVAMAHIALSGLFDRHPGL 209
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: A0A1E3ZFJ2_9BORD (Amidohydro-rel domain-containing protein n=3 Tax=Burkholderiales TaxID=80840 RepID=A0A1E3ZFJ2_9BORD) HSP 1 Score: 67.8 bits (164), Expect = 5.370e-12 Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 1 VWMHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 159
+W+HP R S+ADY A S ++IW GW ++TSVAM HIAL+G+F +YPG+
Sbjct: 157 IWLHPEREASHADYTAESRSHYEIWFALGWPHETSVAMAHIALSGLFDQYPGL 209
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: UPI001685C528 (amidohydrolase family protein n=1 Tax=Anabaena azotica TaxID=197653 RepID=UPI001685C528) HSP 1 Score: 66.2 bits (160), Expect = 1.930e-11 Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 1 VWMHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 159
+W+HPCRP +Y DY S++ +W T GW+ DTS MV + +G+F+RYP +
Sbjct: 161 LWLHPCRPGNYPDYIDENKSEYLLWQTLGWLMDTSSVMVRLVFSGIFQRYPQI 213
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: A0A2E4KV02_9GAMM (Amidohydrolase n=4 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E4KV02_9GAMM) HSP 1 Score: 65.9 bits (159), Expect = 2.650e-11 Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 1 VWMHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 159
+WMHP R Q + DY + S+++IW TFGW Y+TSVAM + +GV RYP +
Sbjct: 159 IWMHPARGQDFPDYQSEDRSEYEIWWTFGWPYETSVAMARLVFSGVLDRYPNL 211
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: A0A536X5P1_9PROT (Amidohydrolase (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536X5P1_9PROT) HSP 1 Score: 65.1 bits (157), Expect = 2.980e-11 Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1
Query: 1 VWMHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYP 153
+WMHP R +ADY + S ++IW TFGW Y+TSVAM HI G+F ++P
Sbjct: 157 IWMHPARGADFADYKDERRSHYEIWWTFGWPYETSVAMAHIVFEGLFDKHP 207 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig95880.31232.1 >prot_Ecto-sp8_S_contig95880.31232.1 ID=prot_Ecto-sp8_S_contig95880.31232.1|Name=mRNA_Ecto-sp8_S_contig95880.31232.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=51bp MHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGback to top mRNA from alignment at Ecto-sp8_S_contig95880:33..446+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig95880.31232.1 ID=mRNA_Ecto-sp8_S_contig95880.31232.1|Name=mRNA_Ecto-sp8_S_contig95880.31232.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=414bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95880:33..446+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig95880:33..446+ >mRNA_Ecto-sp8_S_contig95880.31232.1 ID=mRNA_Ecto-sp8_S_contig95880.31232.1|Name=mRNA_Ecto-sp8_S_contig95880.31232.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95880:33..446+ (Ectocarpus species8 EcLAC_412)back to top |