mRNA_Ecto-sp8_S_contig95880.31232.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig95880.31232.1
Unique NamemRNA_Ecto-sp8_S_contig95880.31232.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: D8LRP0_ECTSI (Amidohydro-rel domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRP0_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 2.840e-29
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1
Query:    1 VWMHPCRPQSYADYDAYKG--SKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 159
            VWMHPCRPQSYADYD+YKG  SKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPG+
Sbjct:  159 VWMHPCRPQSYADYDSYKGEGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGL 213          
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: A0A835Z1K2_9STRA (Amidohydro-rel domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K2_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.880e-24
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 1
Query:    1 VWMHPCRPQSYADYDAY----KGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYP 153
            VW+HPCRPQ+YADYD Y    KGS HQIWN+FGWIYDTSVAMVHIAL GVFRRYP
Sbjct:  164 VWIHPCRPQNYADYDQYQREGKGSLHQIWNSFGWIYDTSVAMVHIALGGVFRRYP 218          
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: A0A7S3UR03_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UR03_HETAK)

HSP 1 Score: 94.0 bits (232), Expect = 6.730e-23
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    1 VWMHPCRPQSYADYDAYK--GSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 159
            VW+HPCRPQ   DYDAY+  GSK+QIWNT GWIYDTSVAMVHIA AGVF+R+P V
Sbjct:    6 VWLHPCRPQFVPDYDAYRAGGSKYQIWNTLGWIYDTSVAMVHIAQAGVFQRHPDV 60          
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: W7TWC5_9STRA (Amidohydrolase 2 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWC5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 7.870e-20
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    1 VWMHPCRPQSYADYDAYKG---SKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 159
            VW+HP RPQ Y DY+AY+G   S HQIWNT GW+YDTSVAMVH+ +AGVF+RYP +
Sbjct:  200 VWLHPNRPQFYPDYEAYRGKGGSLHQIWNTLGWVYDTSVAMVHMVMAGVFQRYPNL 255          
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: A0A3D3BJX0_9GAMM (Amidohydrolase (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D3BJX0_9GAMM)

HSP 1 Score: 68.6 bits (166), Expect = 6.230e-13
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    1 VWMHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYP 153
            +WMHP R Q +ADY +   S+++IW TFGW Y+TSVAM  +  +G+F RYP
Sbjct:   12 IWMHPARGQGFADYQSEDRSEYEIWWTFGWPYETSVAMARLVFSGMFDRYP 62          
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: A0A3P4B6A3_9BURK (Amidohydrolase n=1 Tax=Pigmentiphaga humi TaxID=2478468 RepID=A0A3P4B6A3_9BURK)

HSP 1 Score: 67.8 bits (164), Expect = 5.370e-12
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 VWMHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 159
            +W+HP R  S+ADY A   S ++IW   GW ++TSVAM HIAL+G+F R+PG+
Sbjct:  157 IWLHPDREASHADYTAESKSHYEIWFAIGWPHETSVAMAHIALSGLFDRHPGL 209          
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: A0A1E3ZFJ2_9BORD (Amidohydro-rel domain-containing protein n=3 Tax=Burkholderiales TaxID=80840 RepID=A0A1E3ZFJ2_9BORD)

HSP 1 Score: 67.8 bits (164), Expect = 5.370e-12
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 VWMHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 159
            +W+HP R  S+ADY A   S ++IW   GW ++TSVAM HIAL+G+F +YPG+
Sbjct:  157 IWLHPEREASHADYTAESRSHYEIWFALGWPHETSVAMAHIALSGLFDQYPGL 209          
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: UPI001685C528 (amidohydrolase family protein n=1 Tax=Anabaena azotica TaxID=197653 RepID=UPI001685C528)

HSP 1 Score: 66.2 bits (160), Expect = 1.930e-11
Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    1 VWMHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 159
            +W+HPCRP +Y DY     S++ +W T GW+ DTS  MV +  +G+F+RYP +
Sbjct:  161 LWLHPCRPGNYPDYIDENKSEYLLWQTLGWLMDTSSVMVRLVFSGIFQRYPQI 213          
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: A0A2E4KV02_9GAMM (Amidohydrolase n=4 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E4KV02_9GAMM)

HSP 1 Score: 65.9 bits (159), Expect = 2.650e-11
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    1 VWMHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 159
            +WMHP R Q + DY +   S+++IW TFGW Y+TSVAM  +  +GV  RYP +
Sbjct:  159 IWMHPARGQDFPDYQSEDRSEYEIWWTFGWPYETSVAMARLVFSGVLDRYPNL 211          
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Match: A0A536X5P1_9PROT (Amidohydrolase (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536X5P1_9PROT)

HSP 1 Score: 65.1 bits (157), Expect = 2.980e-11
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 VWMHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYP 153
            +WMHP R   +ADY   + S ++IW TFGW Y+TSVAM HI   G+F ++P
Sbjct:  157 IWMHPARGADFADYKDERRSHYEIWWTFGWPYETSVAMAHIVFEGLFDKHP 207          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig95880.31232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRP0_ECTSI2.840e-2992.73Amidohydro-rel domain-containing protein n=2 Tax=E... [more]
A0A835Z1K2_9STRA1.880e-2481.82Amidohydro-rel domain-containing protein n=1 Tax=T... [more]
A0A7S3UR03_HETAK6.730e-2376.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TWC5_9STRA7.870e-2067.86Amidohydrolase 2 n=2 Tax=Nannochloropsis gaditana ... [more]
A0A3D3BJX0_9GAMM6.230e-1352.94Amidohydrolase (Fragment) n=1 Tax=Gammaproteobacte... [more]
A0A3P4B6A3_9BURK5.370e-1252.83Amidohydrolase n=1 Tax=Pigmentiphaga humi TaxID=24... [more]
A0A1E3ZFJ2_9BORD5.370e-1252.83Amidohydro-rel domain-containing protein n=3 Tax=B... [more]
UPI001685C5281.930e-1145.28amidohydrolase family protein n=1 Tax=Anabaena azo... [more]
A0A2E4KV02_9GAMM2.650e-1149.06Amidohydrolase n=4 Tax=Gammaproteobacteria TaxID=1... [more]
A0A536X5P1_9PROT2.980e-1150.98Amidohydrolase (Fragment) n=1 Tax=Betaproteobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig95880contigEcto-sp8_S_contig95880:33..446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score108.2
Seed ortholog evalue1.1e-21
Seed eggNOG ortholog2880.D8LRP0
Model size159
KEGG koko:K22213
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.decarboxylase
EggNOG OGsCOG2159@1,KOG4245@2759
EC4.1.1.52
Cds size153
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145320.8388443-UTR-Ecto-sp8_S_contig95880:32..381681145320.8388443-UTR-Ecto-sp8_S_contig95880:32..38Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig95880 33..38 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145320.8521903-CDS-Ecto-sp8_S_contig95880:38..861681145320.8521903-CDS-Ecto-sp8_S_contig95880:38..86Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95880 39..86 +
1681145320.8715756-CDS-Ecto-sp8_S_contig95880:341..4461681145320.8715756-CDS-Ecto-sp8_S_contig95880:341..446Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95880 342..446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig95880.31232.1prot_Ecto-sp8_S_contig95880.31232.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig95880 39..446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig95880.31232.1

>prot_Ecto-sp8_S_contig95880.31232.1 ID=prot_Ecto-sp8_S_contig95880.31232.1|Name=mRNA_Ecto-sp8_S_contig95880.31232.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=51bp
MHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPG
V
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mRNA from alignment at Ecto-sp8_S_contig95880:33..446+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig95880.31232.1 ID=mRNA_Ecto-sp8_S_contig95880.31232.1|Name=mRNA_Ecto-sp8_S_contig95880.31232.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=414bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95880:33..446+ (Ectocarpus species8 EcLAC_412)
GTGTGGATGCACCCGTGCAGACCTCAGTCCTACGCCGACTACGACGCGTA CAAGGTGCTTTGCTCGCTCGCTTGATGACCTTTTAGGTCGAACACCCCCT TCTCCTTGGGCATGCTGCTGTTGCAAGTTTCGGTGGGGTATGACCGCGCT TCACCTGGTAACATGCAGTCTTGCTCTCAGGGCCTGTCTACGCGCGCTTG ATTATGACAACGCGGAAGGGTTCACCTCTATGTAGCTGCCATTGTAAACA CGACAAGAACGCCAATCCGCCTCAGGCTGTTCTGCCGTGCCACCTGCTGA CAGGGGGAGGGCAGCAAGCACCAAATCTGGAATACTTTCGGCTGGATTTA CGATACGTCAGTGGCCATGGTCCACATTGCGTTGGCGGGGGTGTTCAGGA GATATCCAGGTGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig95880:33..446+

>mRNA_Ecto-sp8_S_contig95880.31232.1 ID=mRNA_Ecto-sp8_S_contig95880.31232.1|Name=mRNA_Ecto-sp8_S_contig95880.31232.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95880:33..446+ (Ectocarpus species8 EcLAC_412)
ATGCACCCGTGCAGACCTCAGTCCTACGCCGACTACGACGCGTACAAGGG
CAGCAAGCACCAAATCTGGAATACTTTCGGCTGGATTTACGATACGTCAG
TGGCCATGGTCCACATTGCGTTGGCGGGGGTGTTCAGGAGATATCCAGGT
GTG
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