mRNA_Ecto-sp8_S_contig9584.31228.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9584.31228.1
Unique NamemRNA_Ecto-sp8_S_contig9584.31228.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9584.31228.1 vs. uniprot
Match: D7FM94_ECTSI (P-type ATPase (PMID 12707717) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM94_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 7.850e-43
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 MSFATSYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTALR 204
            MSFATSYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTALR
Sbjct:    1 MSFATSYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTALR 68
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BLAST of mRNA_Ecto-sp8_S_contig9584.31228.1 vs. uniprot
Match: A0A7S3LVN7_9EUKA (Phospholipid-transporting ATPase n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3LVN7_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 3.600e-9
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:   10 ATSYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTALR 204
            A +Y+FYK+V   + LF++ FFNG SG   Y+ + S  + +++T LP+++LG+ D DV P  AL 
Sbjct:  520 AINYIFYKNVMNTLVLFLFCFFNGFSGSSLYESLTSAAYNVVWTSLPVIVLGIIDKDVSPKHALE 584
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BLAST of mRNA_Ecto-sp8_S_contig9584.31228.1 vs. uniprot
Match: B6K1G8_SCHJY (Phospholipid-transporting ATPase n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K1G8_SCHJY)

HSP 1 Score: 60.1 bits (144), Expect = 6.800e-9
Identity = 24/60 (40.00%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   25 FYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTALR 204
            FYKS+ W   LF Y  FNG    + +D+   ML+ ++++ LP++++GVYD DV    +LR
Sbjct: 1048 FYKSIVWTFTLFWYQIFNGFDANYLFDYTYIMLFNIVFSSLPVIVMGVYDQDVSAEMSLR 1107
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BLAST of mRNA_Ecto-sp8_S_contig9584.31228.1 vs. uniprot
Match: B6JYR4_SCHJY (Phospholipid-transporting ATPase n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6JYR4_SCHJY)

HSP 1 Score: 59.7 bits (143), Expect = 9.290e-9
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   25 FYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTALR 204
            FYK+V W   LF Y  FN   G + +D+   ML+ L++T LP++++G +D DV  +T+LR
Sbjct: 1063 FYKNVVWTFTLFWYQLFNEFDGNYIFDYTYVMLFNLVFTSLPVIIIGCFDQDVDATTSLR 1122
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BLAST of mRNA_Ecto-sp8_S_contig9584.31228.1 vs. uniprot
Match: A0A821B8Q9_9NEOB (Phospholipid-transporting ATPase (Fragment) n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821B8Q9_9NEOB)

HSP 1 Score: 59.3 bits (142), Expect = 1.260e-8
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   16 SYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDV 183
            SY FYK+ ++ +  F Y+FFNG SGQ  YD V   L+ LLY+ LPI+++G+ D DV
Sbjct:  583 SYFFYKNFAYTLVHFWYSFFNGFSGQTVYDTVFIALYNLLYSSLPIIIVGLQDQDV 638
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BLAST of mRNA_Ecto-sp8_S_contig9584.31228.1 vs. uniprot
Match: UPI001ABE5FBE (phospholipid-transporting ATPase IC n=1 Tax=Bufo bufo TaxID=8384 RepID=UPI001ABE5FBE)

HSP 1 Score: 59.3 bits (142), Expect = 1.270e-8
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   16 SYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDV 183
            +Y FYK+ ++ +  F YAFFNG SGQ  YD V   L+ LLY+ LPI+++G+ D DV
Sbjct:  943 TYFFYKNFAYTLVHFWYAFFNGFSGQTVYDTVFMALYNLLYSSLPIIVVGLQDQDV 998
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BLAST of mRNA_Ecto-sp8_S_contig9584.31228.1 vs. uniprot
Match: A0A0L0H983_SPIPD (Phospholipid-transporting ATPase n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0H983_SPIPD)

HSP 1 Score: 59.3 bits (142), Expect = 1.270e-8
Identity = 24/59 (40.68%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   25 FYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTAL 201
            F K+V W + LF Y F+ G S Q  YD+  ++L+ +++TGLP++++GV+D D+ P + L
Sbjct:  965 FVKNVVWVMVLFWYQFYAGFSAQSVYDFTYTLLYNIVFTGLPVIMIGVFDQDLSPRSIL 1023
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BLAST of mRNA_Ecto-sp8_S_contig9584.31228.1 vs. uniprot
Match: F0WPS0_9STRA (Phospholipid-transporting ATPase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WPS0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.270e-8
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:    1 MSFATSYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTALR 204
            MS    Y+FYK++   +  F Y F++G SGQ FY      L+  +YT LPI++LGV+DMDV P T  R
Sbjct:  959 MSVLVGYMFYKNILMVLAQFYYTFYSGASGQKFYSEFYFQLYNAMYTTLPILVLGVFDMDV-PWTISR 1025
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BLAST of mRNA_Ecto-sp8_S_contig9584.31228.1 vs. uniprot
Match: A0A024GGU9_9STRA (Phospholipid-transporting ATPase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GGU9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.740e-8
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 MSFATSYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDV 183
            MS    Y+FYK++   +  F Y F++G SGQ FY      L+  +YT LPI++LGV+DMDV
Sbjct:  961 MSVLVGYMFYKNILMVLAQFYYTFYSGASGQKFYSEFYFQLYNAMYTTLPILVLGVFDMDV 1021
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BLAST of mRNA_Ecto-sp8_S_contig9584.31228.1 vs. uniprot
Match: A0A0K3CL41_RHOTO (P-type phospholipid transporter n=6 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A0K3CL41_RHOTO)

HSP 1 Score: 58.2 bits (139), Expect = 3.260e-8
Identity = 23/59 (38.98%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   25 FYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTAL 201
            FYK++ W + LF++ FF      + Y++   ML++L++T LP+ +LG++D DV   TAL
Sbjct: 1239 FYKNIVWTLTLFIFQFFCNFDSTYLYEYTLLMLFSLVFTSLPVAVLGIFDQDVHAKTAL 1297
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9584.31228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM94_ECTSI7.850e-43100.00P-type ATPase (PMID 12707717) n=2 Tax=Ectocarpus T... [more]
A0A7S3LVN7_9EUKA3.600e-941.54Phospholipid-transporting ATPase n=1 Tax=Palpitomo... [more]
B6K1G8_SCHJY6.800e-940.00Phospholipid-transporting ATPase n=1 Tax=Schizosac... [more]
B6JYR4_SCHJY9.290e-941.67Phospholipid-transporting ATPase n=1 Tax=Schizosac... [more]
A0A821B8Q9_9NEOB1.260e-850.00Phospholipid-transporting ATPase (Fragment) n=1 Ta... [more]
UPI001ABE5FBE1.270e-850.00phospholipid-transporting ATPase IC n=1 Tax=Bufo b... [more]
A0A0L0H983_SPIPD1.270e-840.68Phospholipid-transporting ATPase n=1 Tax=Spizellom... [more]
F0WPS0_9STRA1.270e-845.59Phospholipid-transporting ATPase n=1 Tax=Albugo la... [more]
A0A024GGU9_9STRA1.740e-845.90Phospholipid-transporting ATPase n=1 Tax=Albugo ca... [more]
A0A0K3CL41_RHOTO3.260e-838.98P-type phospholipid transporter n=6 Tax=Rhodospori... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9584contigEcto-sp8_S_contig9584:123..848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score139.8
Seed ortholog evalue4.7e-31
Seed eggNOG ortholog2880.D7FM94
Preferred nameDNF3
Model size207
KEGG rclassRC00002
KEGG koko:K01509,ko:K01530,ko:K14802
KEGG TC3.A.3.8
KEGG ReactionR00086
KEGG Pathwayko00230,ko04742,map00230,map04742
Hectar predicted targeting categorysignal peptide
GOsGO:0000749,GO:0003674,GO:0003824,GO:0004012,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0005802,GO:0005886,GO:0005937,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006892,GO:0006900,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0010033,GO:0010876,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015914,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019236,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030427,GO:0031136,GO:0031137,GO:0031139,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032456,GO:0033036,GO:0034204,GO:0034613,GO:0042221,GO:0042623,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043332,GO:0043492,GO:0043900,GO:0043902,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045332,GO:0046907,GO:0046999,GO:0048193,GO:0048194,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051286,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070867,GO:0070887,GO:0071310,GO:0071444,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0097035,GO:0097708,GO:0098791,GO:0120025,GO:0120038,GO:2000241,GO:2000243
Exons2
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
Ec32 ortholog descriptionP-type ATPase (PMID 12707717)
Ec32 orthologEc-00_002770.1
EC3.6.1.3,3.6.3.1
Cds size207
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145320.5399957-CDS-Ecto-sp8_S_contig9584:122..2011681145320.5399957-CDS-Ecto-sp8_S_contig9584:122..201Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9584 123..201 +
1681145320.5655928-CDS-Ecto-sp8_S_contig9584:720..8481681145320.5655928-CDS-Ecto-sp8_S_contig9584:720..848Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9584 721..848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9584.31228.1prot_Ecto-sp8_S_contig9584.31228.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9584 123..848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9584.31228.1

>prot_Ecto-sp8_S_contig9584.31228.1 ID=prot_Ecto-sp8_S_contig9584.31228.1|Name=mRNA_Ecto-sp8_S_contig9584.31228.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=69bp
MSFATSYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLP
IVLLGVYDMDVLPSTALR*
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mRNA from alignment at Ecto-sp8_S_contig9584:123..848+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9584.31228.1 ID=mRNA_Ecto-sp8_S_contig9584.31228.1|Name=mRNA_Ecto-sp8_S_contig9584.31228.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=726bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9584:123..848+ (Ectocarpus species8 EcLAC_412)
ATGAGCTTCGCAACCAGCTACCTCTTCTACAAGTCGGTCAGCTGGGCCGT
CCCTCTCTTTGTTTACGCCTTCTTTAACGGTAAGTTTTTTTATTTTTGCT
TGTGTCTCGAATTCCACCGACACCCGTCCACACATTAGGAATAGTCATCA
AAGCCACCAAGAATCGCGACACCCGTCCACACATTAGGATAGTCATCAAA
GCTACCAAGAATCATTTGGCGAGTCCACTTGTGCCAAACCACTGCTGTGT
AGTACGCGACGAACGTATTCGTTGATTTTTCGCCATGAGCCTGATGGTGT
TTTTCATGTCTCTCGCTTTTTTTTGGCATCATCACCAGCACGTTGCCCAA
GCATTGTCCCGTACAACACACGAGTATTTTTCACAGCACACAAACAGCCC
TTCATTTCTCCCGCCTCCTCTCTTGTCGAAATCTGCGCGTCAGTTCAGTA
TGTGCTCAACGCTATTGAGAACCAATCCACCTCCCCCTCCCAATACATTG
ACGCGTTTTCATTGGTCAGCCGGTAGCGCGGTCAATGCTAGCCAGTCAAT
ACCGTACACCGCAATCACTCCCCAACCCTCCCGCCTCATGTCGTCCAGGG
CTGAGCGGACAGTTCTTCTACGACTGGGTGAACTCCATGCTGTGGGCCCT
GCTCTACACCGGCCTGCCGATCGTGCTGCTGGGGGTGTACGACATGGATG
TTTTGCCCTCGACAGCGCTAAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9584:123..848+

>mRNA_Ecto-sp8_S_contig9584.31228.1 ID=mRNA_Ecto-sp8_S_contig9584.31228.1|Name=mRNA_Ecto-sp8_S_contig9584.31228.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9584:123..848+ (Ectocarpus species8 EcLAC_412)
ATGAGCTTCGCAACCAGCTACCTCTTCTACAAGTCGGTCAGCTGGGCCGT
CCCTCTCTTTGTTTACGCCTTCTTTAACGGGCTGAGCGGACAGTTCTTCT
ACGACTGGGTGAACTCCATGCTGTGGGCCCTGCTCTACACCGGCCTGCCG
ATCGTGCTGCTGGGGGTGTACGACATGGATGTTTTGCCCTCGACAGCGCT
AAGGTAG
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