mRNA_Ecto-sp8_S_contig9583.31227.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9583.31227.1
Unique NamemRNA_Ecto-sp8_S_contig9583.31227.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9583.31227.1 vs. uniprot
Match: D7FRU4_ECTSI (BZIP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRU4_ECTSI)

HSP 1 Score: 561 bits (1446), Expect = 1.600e-194
Identity = 403/438 (92.01%), Postives = 408/438 (93.15%), Query Frame = 1 
Query:    1 MELPVAVSPACQPPPLSPLALGGGSESHGLDGWDAEDFDFEELFRDAEEMGAGTDSSEGSPAAAXXXXATGSPVDMSDIDLSLKAEWLERDALSPAMPTPITAAA-VEPTSGGTPSPAADVTSHTVSEGDISAGAGMATRTATXXXXXXXXXXXXXXXXXXXXXXXXXXVSPARSNDSGSSIQAPRSTVSEAXXXXXXXXXXXXXXXX-RLLAVSSGAGTPILPLSFTPGFSGTSNSXXXXXXXXXSAFPALNFSGFQAAAGQALKRLRGGDAPAGAALGQPCAGXXXXXXXXXRLLSGGEGGAGRITKRAKREERLMKNREAANRSRVKRKEVLSELENRADTLSKSLAASRDETASLKQEIASLREQNSFLRGMLSAHGSAIDLPPIVPSGASSHSLRPHRNGRXXXXXXXXXXXSAIIGAVGTGLAVISCVALSA 1308
            MELPVAVSPACQPPPLSPLALGGGSESHG DGWDAEDFDFEELFRDAEEMGAGT SS+G+PAAA    ATGSPVDMSDIDLSLKAEWLERDALSPAMPTPITAAA VEPTSGGTPSPAADVTSHTVSEGDISAGAGMATRTATXXXXXXXXXXXXXXXXXXXXXXXXXXVSPARSNDSGSSIQAPRSTVSEAXXXXXXXXXXXXXXXX RLLAVSSGAGTPILPL+FTP FSGTSNS XXXXXXX SAFPALNFSGFQAAAGQALKRLRGGDAPAGAA GQPCA XXXXXXXXX          GRITKRA+REERLMKNREAANRSRVKRKEVLSELENRADTLSKSLAASRDETASLKQEIASLREQNSFLRGMLSAHGSAIDLPPI+PSGASS SLR HRNG   XXXXXXXXX  IIGAVGTGLAVISCVALSA
Sbjct:    1 MELPVAVSPACQPPPLSPLALGGGSESHGPDGWDAEDFDFEELFRDAEEMGAGTASSDGNPAAAAAA-ATGSPVDMSDIDLSLKAEWLERDALSPAMPTPITAAAAVEPTSGGTPSPAADVTSHTVSEGDISAGAGMATRTATXXXXXXXXXXXXXXXXXXXXXXXXXXVSPARSNDSGSSIQAPRSTVSEAXXXXXXXXXXXXXXXXXRLLAVSSGAGTPILPLAFTPRFSGTSNSSXXXXXXXLSAFPALNFSGFQAAAGQALKRLRGGDAPAGAASGQPCAXXXXXXXXXXXXXXXXXXXXGRITKRARREERLMKNREAANRSRVKRKEVLSELENRADTLSKSLAASRDETASLKQEIASLREQNSFLRGMLSAHGSAIDLPPIMPSGASSDSLRSHRNGGGRXXXXXXXXXXXIIGAVGTGLAVISCVALSA 437
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BLAST of mRNA_Ecto-sp8_S_contig9583.31227.1 vs. uniprot
Match: A0A2D4CAM9_PYTIN (BZIP domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAM9_PYTIN)

HSP 1 Score: 61.6 bits (148), Expect = 1.370e-6
Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:  913 ITKRAKREERLMKNREAANRSRVKRKEVLSELENRADTLSKSLAASRDETASLKQEIASLREQNSFLRGMLSAHGSA---IDLPPIVPSGASSHSLRPHRNGR 1212
            + K++KRE R MKNRE+ANRSR++RK  LSE+    + L+       +  A+L+ E  SL +QN+FLR +++ +      + LPP+    +SS SL    NG+
Sbjct:  214 LAKKSKREIRQMKNRESANRSRLRRKAQLSEMSFEVEQLTNKQHELENTIAALRAENKSLHDQNTFLRSLVTMYSDPSRMVQLPPVPHQASSSVSLSDLENGQ 316
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BLAST of mRNA_Ecto-sp8_S_contig9583.31227.1 vs. uniprot
Match: A0A8K1C9K8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C9K8_PYTOL)

HSP 1 Score: 60.1 bits (144), Expect = 4.510e-6
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:  913 ITKRAKREERLMKNREAANRSRVKRKEVLSELENRADTLSKSLAASRDETASLKQEIASLREQNSFLRGMLSAHGSA---IDLPPI 1161
            + K++KRE R MKNRE+ANRSR+KRK  LSE+    D L+K+    ++  A+L+ E  SL +QN+FLR +++ +  +   + LPP+
Sbjct:  175 MCKKSKREIRQMKNRESANRSRMKRKNQLSEMAVEVDELTKTQHELQNTIAALRAENKSLHDQNAFLRSLVTMYSDSSRNVQLPPV 260
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9583.31227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FRU4_ECTSI1.600e-19492.01BZIP domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A2D4CAM9_PYTIN1.370e-638.83BZIP domain-containing protein n=1 Tax=Pythium ins... [more]
A0A8K1C9K8_PYTOL4.510e-643.02Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9583contigEcto-sp8_S_contig9583:4647..7175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1323
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionBasic leucine zipper domain protein
Ec32 orthologEc-25_000410.1
Cds size1323
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145320.4881985-CDS-Ecto-sp8_S_contig9583:4646..56301681145320.4881985-CDS-Ecto-sp8_S_contig9583:4646..5630Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9583 4647..5630 +
1681145320.5013187-CDS-Ecto-sp8_S_contig9583:6836..71751681145320.5013187-CDS-Ecto-sp8_S_contig9583:6836..7175Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9583 6837..7175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9583.31227.1prot_Ecto-sp8_S_contig9583.31227.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9583 4647..7175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9583.31227.1

>prot_Ecto-sp8_S_contig9583.31227.1 ID=prot_Ecto-sp8_S_contig9583.31227.1|Name=mRNA_Ecto-sp8_S_contig9583.31227.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=441bp
MELPVAVSPACQPPPLSPLALGGGSESHGLDGWDAEDFDFEELFRDAEEM
GAGTDSSEGSPAAAAAAAATGSPVDMSDIDLSLKAEWLERDALSPAMPTP
ITAAAVEPTSGGTPSPAADVTSHTVSEGDISAGAGMATRTATTTTTWSTT
SVSEESDDGGSSCIMGGGVSPARSNDSGSSIQAPRSTVSEASTAAASAAA
AASNSSKRLLAVSSGAGTPILPLSFTPGFSGTSNSSAAAAAAALSAFPAL
NFSGFQAAAGQALKRLRGGDAPAGAALGQPCAGGGAAAATPTRLLSGGEG
GAGRITKRAKREERLMKNREAANRSRVKRKEVLSELENRADTLSKSLAAS
RDETASLKQEIASLREQNSFLRGMLSAHGSAIDLPPIVPSGASSHSLRPH
RNGRGRGAAAAAAGASAIIGAVGTGLAVISCVALSAAGFGG
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mRNA from alignment at Ecto-sp8_S_contig9583:4647..7175+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9583.31227.1 ID=mRNA_Ecto-sp8_S_contig9583.31227.1|Name=mRNA_Ecto-sp8_S_contig9583.31227.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2529bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9583:4647..7175+ (Ectocarpus species8 EcLAC_412)
ATGGAGCTTCCCGTGGCGGTCTCACCCGCGTGTCAGCCGCCCCCGCTGTC
ACCTCTAGCGCTGGGCGGCGGCAGCGAGAGTCACGGCCTCGATGGTTGGG
ACGCAGAAGACTTCGACTTCGAAGAGCTTTTCCGAGATGCGGAGGAGATG
GGGGCCGGAACGGACAGCAGCGAGGGCAGCCCGGCCGCCGCCGCCGCCGC
CGCTGCCACCGGCTCGCCCGTCGACATGAGTGACATCGACCTCAGCCTCA
AGGCCGAGTGGCTCGAGAGGGACGCTCTCTCTCCCGCAATGCCGACTCCG
ATCACTGCTGCTGCTGTTGAGCCAACAAGCGGCGGCACCCCTTCGCCCGC
GGCGGACGTGACCAGCCACACCGTGAGCGAGGGCGACATCAGTGCCGGTG
CCGGGATGGCCACGCGTACCGCTACCACCACCACCACCTGGTCCACCACA
AGCGTGTCCGAAGAGAGCGACGATGGCGGCAGCAGCTGCATCATGGGAGG
CGGAGTTTCCCCCGCGCGGTCCAACGACAGCGGCAGCAGCATTCAAGCAC
CCAGGAGCACCGTAAGCGAAGCTAGCACCGCTGCCGCCTCCGCCGCCGCC
GCCGCCAGCAACAGCAGCAAGCGCCTACTGGCCGTGAGCTCGGGCGCGGG
CACGCCGATCCTCCCTCTCTCCTTCACCCCCGGGTTCAGCGGAACGAGCA
ACTCTAGCGCCGCCGCCGCCGCCGCCGCCCTATCCGCCTTCCCCGCTCTC
AACTTCAGCGGCTTCCAAGCGGCAGCCGGGCAGGCGTTGAAGCGGCTTCG
AGGAGGGGATGCGCCAGCGGGTGCCGCTTTGGGGCAACCTTGTGCTGGAG
GAGGGGCGGCGGCTGCTACGCCGACGCGGCTGCTGTCGGGCGGCGAGGGT
GGGGCGGGTCGGATCACGAAGAGGGCCAAGCGGGAGGAGAGGCTCATGAA
GAACAGGGAGGCGGCCAACAGATCGAGAGTGAAGGTGTGTACATGTTACA
GTTCTTGGTATTTCATCAATACGTAAAAGCAGACCGCGCCACCCGGCTGA
CCAATGACAAGACGCCAGACACACAGCAGTTGCAGTGCGACTAAAAACAG
GGTAGTAGTGTTTCTGTGGGATTGGTGGGTGTGTACCTGGAATGCTTCGA
TAGGCCATGGTGCCGTGACCTTCGGTTAGGTGTCTGCTGTGCGTGTCCGT
TGGTAGTCTGGGGGAAGAAATCAAGGCTCTTGCGGATCTTCTCTCTCTTG
GCGCAAATGATCAAGTTCTTTGGGTGCACAACAGCAGTAGGCTATAGAAG
TGCGTAGAAGCTGTTGCCTCAACTTCTGCCTGTATCACTGCAATACTAGG
GTGAGGGCATTGGGTGCGGTGTTATGGTATCAAGGCTTGCGTTTCTCAGG
GGTAGGGTGCACGGGGTGTCTACATGCCCGGCGCGAATTCGTACGGCGAC
GGGCTGAAACCGAGATAAGACCAATAAAACAAAATGAAAAGGTAGACTTG
TCGACAAATCGAACCACACAAGCTTGGTGTTGTGGCGTGGAGTTTTTTTT
CTCGTCGAGTTGTTCGCTGGGATGCCGAATGCGTTCAAGATTTTCAGATG
CTAATCCTGTTTTGCGCTCTGTGGAGCGGCACTGCAGCAGTGGCAGCAGT
CAGCTGTAGGTTTACCGTCCCGCCAGTTTTTTTTGGTCTGCGGTTGCCTT
CAGCTTTTCTTCCGATGATCGCGACACATGCAGTATGCGGCCGGCCCTGC
GCGCCTGCCTCCTTGCACAACCCCGTCTGTAGGATGCTCTCCTCTTTTTT
TCTGAAACAGCGGTGTGACCTTATTTTTTGTCGCACCCCCCCTCTCAGCC
GGTCGTGTTATGGACCATGTGTGAACGATTTTCCTGCGTCATGGCGGACT
TGTATCACGGGACTCAATCTCCGAGCATCTACACCACAGAATGCCGAGCA
TTGCCCGACGCAAACCCCTTCTGTATGCCGATATATTTGCACAGTCCAAC
CAAGCACTATTGAAACCGGATGATCTCTCTCTCTCGCGCTCTCTCTCTCT
TACTCTCGCTTTCTTCATCCACGGAGTGCCGATTGCCCGATCCGAACCCC
TTCTGTATGTCGATATTTTTTCCAGCCCAACCAAGCACTATTGAAGCCGG
GATGCCCTATCTCTCTCTCTCTCTTTCTATCCCTTTCCAGCGCAAAGAGG
TGCTGAGCGAGCTCGAGAACCGCGCGGACACCCTCTCCAAGAGCCTGGCG
GCGTCCCGCGACGAGACCGCCTCCCTCAAGCAAGAGATCGCGTCCCTCCG
CGAACAGAACTCCTTCCTGCGGGGCATGCTCTCCGCCCATGGCAGCGCCA
TCGACCTCCCTCCCATCGTGCCCAGCGGCGCTTCGTCGCACAGCCTCAGG
CCACACCGTAACGGCCGCGGGCGTGGCGCCGCCGCCGCCGCCGCCGGCGC
TAGCGCTATCATCGGGGCCGTCGGCACCGGCCTGGCGGTGATCAGCTGTG
TCGCTCTCTCTGCGGCCGGGTTCGGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9583:4647..7175+

>mRNA_Ecto-sp8_S_contig9583.31227.1 ID=mRNA_Ecto-sp8_S_contig9583.31227.1|Name=mRNA_Ecto-sp8_S_contig9583.31227.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1323bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9583:4647..7175+ (Ectocarpus species8 EcLAC_412)
ATGGAGCTTCCCGTGGCGGTCTCACCCGCGTGTCAGCCGCCCCCGCTGTC
ACCTCTAGCGCTGGGCGGCGGCAGCGAGAGTCACGGCCTCGATGGTTGGG
ACGCAGAAGACTTCGACTTCGAAGAGCTTTTCCGAGATGCGGAGGAGATG
GGGGCCGGAACGGACAGCAGCGAGGGCAGCCCGGCCGCCGCCGCCGCCGC
CGCTGCCACCGGCTCGCCCGTCGACATGAGTGACATCGACCTCAGCCTCA
AGGCCGAGTGGCTCGAGAGGGACGCTCTCTCTCCCGCAATGCCGACTCCG
ATCACTGCTGCTGCTGTTGAGCCAACAAGCGGCGGCACCCCTTCGCCCGC
GGCGGACGTGACCAGCCACACCGTGAGCGAGGGCGACATCAGTGCCGGTG
CCGGGATGGCCACGCGTACCGCTACCACCACCACCACCTGGTCCACCACA
AGCGTGTCCGAAGAGAGCGACGATGGCGGCAGCAGCTGCATCATGGGAGG
CGGAGTTTCCCCCGCGCGGTCCAACGACAGCGGCAGCAGCATTCAAGCAC
CCAGGAGCACCGTAAGCGAAGCTAGCACCGCTGCCGCCTCCGCCGCCGCC
GCCGCCAGCAACAGCAGCAAGCGCCTACTGGCCGTGAGCTCGGGCGCGGG
CACGCCGATCCTCCCTCTCTCCTTCACCCCCGGGTTCAGCGGAACGAGCA
ACTCTAGCGCCGCCGCCGCCGCCGCCGCCCTATCCGCCTTCCCCGCTCTC
AACTTCAGCGGCTTCCAAGCGGCAGCCGGGCAGGCGTTGAAGCGGCTTCG
AGGAGGGGATGCGCCAGCGGGTGCCGCTTTGGGGCAACCTTGTGCTGGAG
GAGGGGCGGCGGCTGCTACGCCGACGCGGCTGCTGTCGGGCGGCGAGGGT
GGGGCGGGTCGGATCACGAAGAGGGCCAAGCGGGAGGAGAGGCTCATGAA
GAACAGGGAGGCGGCCAACAGATCGAGAGTGAAGCGCAAAGAGGTGCTGA
GCGAGCTCGAGAACCGCGCGGACACCCTCTCCAAGAGCCTGGCGGCGTCC
CGCGACGAGACCGCCTCCCTCAAGCAAGAGATCGCGTCCCTCCGCGAACA
GAACTCCTTCCTGCGGGGCATGCTCTCCGCCCATGGCAGCGCCATCGACC
TCCCTCCCATCGTGCCCAGCGGCGCTTCGTCGCACAGCCTCAGGCCACAC
CGTAACGGCCGCGGGCGTGGCGCCGCCGCCGCCGCCGCCGGCGCTAGCGC
TATCATCGGGGCCGTCGGCACCGGCCTGGCGGTGATCAGCTGTGTCGCTC
TCTCTGCGGCCGGGTTCGGGGGC
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