mRNA_Ecto-sp8_S_contig9583.31226.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9583.31226.1
Unique NamemRNA_Ecto-sp8_S_contig9583.31226.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9583.31226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9583contigEcto-sp8_S_contig9583:101..789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size689
Hectar predicted targeting categorysignal anchor
Exons1
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145320.4343839-UTR-Ecto-sp8_S_contig9583:100..2001681145320.4343839-UTR-Ecto-sp8_S_contig9583:100..200Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9583 101..200 +
1681145320.455852-UTR-Ecto-sp8_S_contig9583:602..7891681145320.455852-UTR-Ecto-sp8_S_contig9583:602..789Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9583 603..789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145320.4453828-CDS-Ecto-sp8_S_contig9583:200..6021681145320.4453828-CDS-Ecto-sp8_S_contig9583:200..602Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9583 201..602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9583.31226.1prot_Ecto-sp8_S_contig9583.31226.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9583 201..602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9583.31226.1

>prot_Ecto-sp8_S_contig9583.31226.1 ID=prot_Ecto-sp8_S_contig9583.31226.1|Name=mRNA_Ecto-sp8_S_contig9583.31226.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=134bp
MHTAARAVPPDQRKSPLTRNKRLHMHTALQKCIIFGFPNGAGGGRAERGQ
RHKADRSLFGEYFIAFSALLVLGTIDSLLAVKNRRLEVVASSCFICLAVS
LFLYCSSGLHTEKLSCLCPVHSNICRGGCLNTV*
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mRNA from alignment at Ecto-sp8_S_contig9583:101..789+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9583.31226.1 ID=mRNA_Ecto-sp8_S_contig9583.31226.1|Name=mRNA_Ecto-sp8_S_contig9583.31226.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=689bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9583:101..789+ (Ectocarpus species8 EcLAC_412)
GCTACATTTCGTCGCAGACTCGGGTATCACAAAACCCGTAGTAGAGCCCC
GCTAAATCGCATGGCAGCTCGTTTGCTTCCTTGTGGGTATTTCGACATAT
ATGCATACTGCCGCCCGCGCCGTGCCGCCCGACCAACGGAAGTCTCCACT
GACGAGAAACAAAAGGCTACACATGCATACAGCCTTGCAGAAGTGCATCA
TTTTCGGTTTTCCCAACGGGGCAGGGGGCGGACGGGCAGAACGTGGACAA
CGACACAAAGCCGATCGATCCCTCTTTGGAGAGTATTTCATAGCCTTCTC
GGCGCTGCTTGTGCTTGGGACAATTGACTCTCTTCTTGCTGTGAAAAACC
GGCGTTTGGAAGTTGTTGCCTCGTCTTGTTTTATTTGTTTGGCGGTGTCC
TTATTCTTGTACTGTAGCAGTGGGCTTCACACTGAAAAACTTTCCTGCCT
CTGCCCAGTACATTCGAACATCTGTCGTGGTGGATGCCTAAATACGGTGT
GAGTGTAGCGGACTGAATATCGCAGAAAGGGCAGGGATACCCGCCACCTA
CATCCTCCTCGTTTCTGCCGTGGCAACCTCAATCCAACCCAATCCCTCTC
ACCTTCGGAAGTCATGGCACCGCTGACAGTGTGGGCGTTCTTGCGAGGGC
CGAATATAACCACGAGCAGATGGCGGCACCCCGTGAAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9583:101..789+

>mRNA_Ecto-sp8_S_contig9583.31226.1 ID=mRNA_Ecto-sp8_S_contig9583.31226.1|Name=mRNA_Ecto-sp8_S_contig9583.31226.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9583:101..789+ (Ectocarpus species8 EcLAC_412)
ATGCATACTGCCGCCCGCGCCGTGCCGCCCGACCAACGGAAGTCTCCACT
GACGAGAAACAAAAGGCTACACATGCATACAGCCTTGCAGAAGTGCATCA
TTTTCGGTTTTCCCAACGGGGCAGGGGGCGGACGGGCAGAACGTGGACAA
CGACACAAAGCCGATCGATCCCTCTTTGGAGAGTATTTCATAGCCTTCTC
GGCGCTGCTTGTGCTTGGGACAATTGACTCTCTTCTTGCTGTGAAAAACC
GGCGTTTGGAAGTTGTTGCCTCGTCTTGTTTTATTTGTTTGGCGGTGTCC
TTATTCTTGTACTGTAGCAGTGGGCTTCACACTGAAAAACTTTCCTGCCT
CTGCCCAGTACATTCGAACATCTGTCGTGGTGGATGCCTAAATACGGTGT
GA
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