mRNA_Ecto-sp8_S_contig95765.31212.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig95765.31212.1
Unique NamemRNA_Ecto-sp8_S_contig95765.31212.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig95765.31212.1 vs. uniprot
Match: D8LRP0_ECTSI (Amidohydro-rel domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRP0_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 5.320e-33
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 1
Query:    1 ELGAVVWMHPCRPQSYADYDAYKG--SKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 174
            ELGAVVWMHPCRPQSYADYD+YKG  SKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPG+
Sbjct:  154 ELGAVVWMHPCRPQSYADYDSYKGEGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGL 213          
BLAST of mRNA_Ecto-sp8_S_contig95765.31212.1 vs. uniprot
Match: A0A835Z1K2_9STRA (Amidohydro-rel domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 5.900e-26
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 1
Query:    1 ELGAVVWMHPCRPQSYADYDAY----KGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYP 168
            EL   VW+HPCRPQ+YADYD Y    KGS HQIWN+FGWIYDTSVAMVHIAL GVFRRYP
Sbjct:  159 ELDVAVWIHPCRPQNYADYDQYQREGKGSLHQIWNSFGWIYDTSVAMVHIALGGVFRRYP 218          
BLAST of mRNA_Ecto-sp8_S_contig95765.31212.1 vs. uniprot
Match: A0A7S3UR03_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UR03_HETAK)

HSP 1 Score: 97.8 bits (242), Expect = 2.590e-24
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 1
Query:    7 GAVVWMHPCRPQSYADYDAYK--GSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 174
            GA VW+HPCRPQ   DYDAY+  GSK+QIWNT GWIYDTSVAMVHIA AGVF+R+P V
Sbjct:    3 GAPVWLHPCRPQFVPDYDAYRAGGSKYQIWNTLGWIYDTSVAMVHIAQAGVFQRHPDV 60          
BLAST of mRNA_Ecto-sp8_S_contig95765.31212.1 vs. uniprot
Match: W7TWC5_9STRA (Amidohydrolase 2 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWC5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 7.260e-21
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 1
Query:    1 ELGAVVWMHPCRPQSYADYDAYKG---SKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 174
            E G  VW+HP RPQ Y DY+AY+G   S HQIWNT GW+YDTSVAMVH+ +AGVF+RYP +
Sbjct:  195 EDGVPVWLHPNRPQFYPDYEAYRGKGGSLHQIWNTLGWVYDTSVAMVHMVMAGVFQRYPNL 255          
BLAST of mRNA_Ecto-sp8_S_contig95765.31212.1 vs. uniprot
Match: A0A3D3BJX0_9GAMM (Amidohydrolase (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D3BJX0_9GAMM)

HSP 1 Score: 72.0 bits (175), Expect = 3.550e-14
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    1 ELGAVVWMHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYP 168
            E G  +WMHP R Q +ADY +   S+++IW TFGW Y+TSVAM  +  +G+F RYP
Sbjct:    7 ESGKPIWMHPARGQGFADYQSEDRSEYEIWWTFGWPYETSVAMARLVFSGMFDRYP 62          
BLAST of mRNA_Ecto-sp8_S_contig95765.31212.1 vs. uniprot
Match: UPI001685C528 (amidohydrolase family protein n=1 Tax=Anabaena azotica TaxID=197653 RepID=UPI001685C528)

HSP 1 Score: 72.4 bits (176), Expect = 1.390e-13
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 ELGAVVWMHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 174
            ELG  +W+HPCRP +Y DY     S++ +W T GW+ DTS  MV +  +G+F+RYP +
Sbjct:  156 ELGVPLWLHPCRPGNYPDYIDENKSEYLLWQTLGWLMDTSSVMVRLVFSGIFQRYPQI 213          
BLAST of mRNA_Ecto-sp8_S_contig95765.31212.1 vs. uniprot
Match: A0A3P4B6A3_9BURK (Amidohydrolase n=1 Tax=Pigmentiphaga humi TaxID=2478468 RepID=A0A3P4B6A3_9BURK)

HSP 1 Score: 70.9 bits (172), Expect = 5.070e-13
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 ELGAVVWMHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 174
            EL   +W+HP R  S+ADY A   S ++IW   GW ++TSVAM HIAL+G+F R+PG+
Sbjct:  152 ELDRPIWLHPDREASHADYTAESKSHYEIWFAIGWPHETSVAMAHIALSGLFDRHPGL 209          
BLAST of mRNA_Ecto-sp8_S_contig95765.31212.1 vs. uniprot
Match: A0A2E4KV02_9GAMM (Amidohydrolase n=4 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E4KV02_9GAMM)

HSP 1 Score: 69.3 bits (168), Expect = 1.830e-12
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    1 ELGAVVWMHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 174
            E G  +WMHP R Q + DY +   S+++IW TFGW Y+TSVAM  +  +GV  RYP +
Sbjct:  154 ESGKPIWMHPARGQDFPDYQSEDRSEYEIWWTFGWPYETSVAMARLVFSGVLDRYPNL 211          
BLAST of mRNA_Ecto-sp8_S_contig95765.31212.1 vs. uniprot
Match: A0A1E3ZFJ2_9BORD (Amidohydro-rel domain-containing protein n=3 Tax=Burkholderiales TaxID=80840 RepID=A0A1E3ZFJ2_9BORD)

HSP 1 Score: 68.9 bits (167), Expect = 2.530e-12
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    4 LGAVVWMHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPGV 174
            L   +W+HP R  S+ADY A   S ++IW   GW ++TSVAM HIAL+G+F +YPG+
Sbjct:  153 LDLPIWLHPEREASHADYTAESRSHYEIWFALGWPHETSVAMAHIALSGLFDQYPGL 209          
BLAST of mRNA_Ecto-sp8_S_contig95765.31212.1 vs. uniprot
Match: A0A536X5P1_9PROT (Amidohydrolase (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536X5P1_9PROT)

HSP 1 Score: 67.4 bits (163), Expect = 5.020e-12
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 ELGAVVWMHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYP 168
            E+   +WMHP R   +ADY   + S ++IW TFGW Y+TSVAM HI   G+F ++P
Sbjct:  152 EIDLPIWMHPARGADFADYKDERRSHYEIWWTFGWPYETSVAMAHIVFEGLFDKHP 207          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig95765.31212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRP0_ECTSI5.320e-3393.33Amidohydro-rel domain-containing protein n=2 Tax=E... [more]
A0A835Z1K2_9STRA5.900e-2678.33Amidohydro-rel domain-containing protein n=1 Tax=T... [more]
A0A7S3UR03_HETAK2.590e-2475.86Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TWC5_9STRA7.260e-2165.57Amidohydrolase 2 n=2 Tax=Nannochloropsis gaditana ... [more]
A0A3D3BJX0_9GAMM3.550e-1451.79Amidohydrolase (Fragment) n=1 Tax=Gammaproteobacte... [more]
UPI001685C5281.390e-1346.55amidohydrolase family protein n=1 Tax=Anabaena azo... [more]
A0A3P4B6A3_9BURK5.070e-1351.72Amidohydrolase n=1 Tax=Pigmentiphaga humi TaxID=24... [more]
A0A2E4KV02_9GAMM1.830e-1248.28Amidohydrolase n=4 Tax=Gammaproteobacteria TaxID=1... [more]
A0A1E3ZFJ2_9BORD2.530e-1250.88Amidohydro-rel domain-containing protein n=3 Tax=B... [more]
A0A536X5P1_9PROT5.020e-1248.21Amidohydrolase (Fragment) n=1 Tax=Betaproteobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig95765contigEcto-sp8_S_contig95765:18..447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score108.2
Seed ortholog evalue1.1e-21
Seed eggNOG ortholog2880.D8LRP0
Model size174
KEGG koko:K22213
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.decarboxylase
EggNOG OGsCOG2159@1,KOG4245@2759
EC4.1.1.52
Cds size153
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145319.4787257-UTR-Ecto-sp8_S_contig95765:17..381681145319.4787257-UTR-Ecto-sp8_S_contig95765:17..38Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig95765 18..38 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145319.4925878-CDS-Ecto-sp8_S_contig95765:38..861681145319.4925878-CDS-Ecto-sp8_S_contig95765:38..86Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95765 39..86 +
1681145319.50567-CDS-Ecto-sp8_S_contig95765:342..4471681145319.50567-CDS-Ecto-sp8_S_contig95765:342..447Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95765 343..447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig95765.31212.1prot_Ecto-sp8_S_contig95765.31212.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig95765 39..447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig95765.31212.1

>prot_Ecto-sp8_S_contig95765.31212.1 ID=prot_Ecto-sp8_S_contig95765.31212.1|Name=mRNA_Ecto-sp8_S_contig95765.31212.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=51bp
MHPCRPQSYADYDAYKGSKHQIWNTFGWIYDTSVAMVHIALAGVFRRYPG
V
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mRNA from alignment at Ecto-sp8_S_contig95765:18..447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig95765.31212.1 ID=mRNA_Ecto-sp8_S_contig95765.31212.1|Name=mRNA_Ecto-sp8_S_contig95765.31212.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=430bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95765:18..447+ (Ectocarpus species8 EcLAC_412)
GAGCTCGGGGCTGTCGTGTGGATGCACCCGTGCAGACCTCAGTCCTACGC CGACTACGACGCGTACAAGGTGCTTTGCTCGCTCGCTTGATGACCTTTTA GGTCGAACACTCCCTTCTCCTTGGACATGCTGCTGTAGCAAGTTTCGGTG GGGTATGACCGCGCTTCACCTGATAACATGCAGTCTTGCTTTCAGGGCCT GGCTACGCGCGCTTGATGATGACAACGCGGAAAGGGTTCACCTCTATGTA GCTGCCATTATAAATACGGCAACAACACCAATCCGCCTCAGGCTGTTCTG CCGTGCCACCCACTGACAGGGGGAGGGCAGCAAGCACCAAATCTGGAATA CTTTCGGCTGGATTTACGATACGTCAGTGGCCATGGTCCACATCGCGTTG GCGGGGGTGTTCAGGAGATATCCAGGTGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig95765:18..447+

>mRNA_Ecto-sp8_S_contig95765.31212.1 ID=mRNA_Ecto-sp8_S_contig95765.31212.1|Name=mRNA_Ecto-sp8_S_contig95765.31212.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95765:18..447+ (Ectocarpus species8 EcLAC_412)
ATGCACCCGTGCAGACCTCAGTCCTACGCCGACTACGACGCGTACAAGGG
CAGCAAGCACCAAATCTGGAATACTTTCGGCTGGATTTACGATACGTCAG
TGGCCATGGTCCACATCGCGTTGGCGGGGGTGTTCAGGAGATATCCAGGT
GTG
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