mRNA_Ecto-sp8_S_contig9572.31203.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9572.31203.1
Unique NamemRNA_Ecto-sp8_S_contig9572.31203.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9572.31203.1 vs. uniprot
Match: A0A6H5JQM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM0_9PHAE)

HSP 1 Score: 537 bits (1383), Expect = 5.970e-182
Identity = 263/274 (95.99%), Postives = 267/274 (97.45%), Query Frame = 2
Query:    2 EDSCWIFMHMDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRSHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPVCPPTESTGLAVFAELWGNFAMRQFALAAVSPSAVKEWAAQRQARTGTSMWYLVKEYLARGGIAEDEVLESMLEPVKGLLSTQYAAVGVAQELETTMVLFSKALSMEGLDWSSSWATLGINEEDKQDSEYDIAESEPFRQLLENPRIVSALRLDMSLYEHAVHVFKDQVAQFGIE 823
            EDSCWIFMHMDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLR+HK RSCKWLTIFRHPIARLLSAY HCL APKDPVCPPTESTGL VFAELWGNFAMRQFAL +VSPSAVKEWAAQRQARTGTSMWYLVKEYLARGGIAEDEVLESMLEPVKGLLSTQYAAVG+AQELETTMVLFSKALSMEGLDWSSSWATLGINEE KQDSEYDIAESEPFRQ LENPRIVSALRLDMSLYEHA+HVFKDQVAQFGIE
Sbjct:  270 EDSCWIFMHMDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKERSCKWLTIFRHPIARLLSAYHHCLEAPKDPVCPPTESTGLVVFAELWGNFAMRQFALESVSPSAVKEWAAQRQARTGTSMWYLVKEYLARGGIAEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSMEGLDWSSSWATLGINEEVKQDSEYDIAESEPFRQALENPRIVSALRLDMSLYEHAMHVFKDQVAQFGIE 543          
BLAST of mRNA_Ecto-sp8_S_contig9572.31203.1 vs. uniprot
Match: D8LU75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU75_ECTSI)

HSP 1 Score: 517 bits (1332), Expect = 1.530e-178
Identity = 254/265 (95.85%), Postives = 259/265 (97.74%), Query Frame = 2
Query:   29 MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRSHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPVCPPTESTGLAVFAELWGNFAMRQFALAAVSPSAVKEWAAQRQARTGTSMWYLVKEYLARGGIAEDEVLESMLEPVKGLLSTQYAAVGVAQELETTMVLFSKALSMEGLDWSSSWATLGINEEDKQDSEYDIAESEPFRQLLENPRIVSALRLDMSLYEHAVHVFKDQVAQFGIE 823
            MDKSGASGARRVATE+WRKDELVFDTVQWRRGDGFAADVMAS WKLLHGGCVESLR+HKGRSCKW+TIFRHPIARLLSAYDHCLGAPKDPVCPPTESTGLA FAELWGNFAMRQFALAAVSPSAVKEWAAQRQARTGTSMWYLVKEYLARGGIAEDEVL S LEPVKGLLSTQYAAVG+AQEL+TTMVLFSKALSMEGLDWSSSWATLGINEEDKQDSEYDI ESEPFRQ LENPRIVSALRLDMSLYEHAVHVFKDQVAQFGIE
Sbjct:    1 MDKSGASGARRVATEQWRKDELVFDTVQWRRGDGFAADVMASRWKLLHGGCVESLRNHKGRSCKWITIFRHPIARLLSAYDHCLGAPKDPVCPPTESTGLAAFAELWGNFAMRQFALAAVSPSAVKEWAAQRQARTGTSMWYLVKEYLARGGIAEDEVLGSKLEPVKGLLSTQYAAVGIAQELKTTMVLFSKALSMEGLDWSSSWATLGINEEDKQDSEYDITESEPFRQALENPRIVSALRLDMSLYEHAVHVFKDQVAQFGIE 265          
BLAST of mRNA_Ecto-sp8_S_contig9572.31203.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 7.850e-46
Identity = 104/306 (33.99%), Postives = 154/306 (50.33%), Query Frame = 2
Query:    2 EDSCWIFMHMDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMAS-----HWKLLHGGCVESLR-------SHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPVCPP----TESTGLAVFAELWGNFAMRQFALAAVSPSAVKEWAAQRQARTGTSM----------WYLVKEYLA-RGGIAEDEV-----LESMLEPVKGLLSTQYAAVGVAQELETTMVLFSKALSMEGLDWSSSWATLG-INEEDKQDSEYDIAESEPFRQLLENPRIVSALRLDMSLYEHAVHVFKDQVAQFGI 820
            E+ CWIF H+ K+G +  +R+  + W  +   +D+ QW++G G+A  V AS      W    GG +E+LR         +   C+W T+FRHP++RL+SAY +C   P D +C      + +  L  FA  WGNFA+RQFAL  VS   VK++           +          WY++K +L  R G+A+D       LE M  PV  LL   YA VG+ ++   T+ LF  AL M G+ W   +   G +N     D+ +   + +  +Q L +P IV  L LD+ LY  AV +F  Q   +GI
Sbjct:   85 ENRCWIFNHLQKAGGTTVKRLLFDSWGSESTTYDSYQWKKGQGYAESVAASLASPAGWSAAAGGYLEALRRTPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCREDPSDQLCASEFVSSRNVDLVTFARHWGNFALRQFALGFVSHDKVKDFLVSPNGGGAMGLTAEQVELMPGWYMLKLFLNDRSGVADDTSPEGTRLEYMFRPVVDLLRDNYAVVGILEDWNATLSLFDSALDMPGMTWREEFERSGKLNV----DTRFKGEKQDVLQQALSDPEIVKHLSLDLRLYGQAVDIFNQQRHSYGI 386          
BLAST of mRNA_Ecto-sp8_S_contig9572.31203.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.330e-39
Identity = 94/293 (32.08%), Postives = 146/293 (49.83%), Query Frame = 2
Query:   11 CWIFMHMDKSGASGARRVA----TERWRKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRSHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPVCPPT----ESTGLAVFAELWGNFAMRQFALAAVSPS------AVKEWAAQRQARTGTSM--WYLVKEYLAR-------GGIAEDEVLESMLEPVKGLLSTQYAAVGVAQELETTMVLFSKALSMEGLDWSSSWATLGINEEDKQDSEYDIAESEPFRQLLENPRIVSALRLDMSLYEHAVHVFKDQVAQFGI 820
            CW+F HM+KSG    R++     TE+     L FD ++W  G  +A   +  +    +GG  E LR +  R CKW T+FRHP++R++SAY +C  A  D +C           L  FAE WGN+ +RQFALA++          V E+  Q +      +  WY  K YL         G    +  L   L   +  LST+YAAVG+ +E + +M LF++ L++   DW   +   G  +++   S+++ A     +    +P +   + LD+ LY+HA+ V + QVA  GI
Sbjct:   52 CWVFSHMNKSGGMTVRKMIMPFLTEKGVSTAL-FDDIEWSSGRSYAETFVKENAVFTYGGYTEGLRMYDDRDCKWFTVFRHPVSRVVSAYFYCQRAHHDQLCAAVVLDASKVDLLTFAEHWGNYGLRQFALASIKAEDVFHNEVVSEFCQQARGHGDVCIPAWYRQKHYLHLPHQDDFCGPTQPESGLAQFLSSAQETLSTRYAAVGIIEEWDNSMELFNRVLNLRRFDWVKEFQKSG--KKNSGGSQFETASKSALKAAWHSPELKKFIWLDILLYDHALSVHRSQVADLGI 341          
BLAST of mRNA_Ecto-sp8_S_contig9572.31203.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 2.360e-38
Identity = 106/307 (34.53%), Postives = 155/307 (50.49%), Query Frame = 2
Query:   29 MDKSGASGARRVATERWRKDELV----FDTVQWRRGDGFAADVMASHWKLLHGGCVESLRSHKG---RSCKWLTIFRHPIARLLSAYDHCLGAPKDPVCPPT------ESTGLAVFAELWGNFAMRQFALAAVSPSAVKEWAAQRQARTGTSM------------WYLVKEYL------------ARG----GIAED--EVLESMLEPVKGLLSTQYAAVGVAQELETTMVLFSKALSMEGLDWSSSWATLGINEEDKQDSEYDIAESEPFRQLLENPRIVSALRLDMSLYEHAVHVFKDQVAQFGI 820
            M+K+G S  + +    W K + V    +D+ QW  G  FA D +     L+ G   E LR   G   R CKW TIFRHPI RL+SAY +C   P+D +C         + T L  FAE WG+F +RQFALA V P   +E  A +     T +            WY +K YL            +RG    G A      +  +L+PV+ LL+ +YAAVGV ++ ET+++LF++AL M G DW  ++ ++G       D  +   E+E   +   +PR+   L LD+ LY++AV V   QV ++G+
Sbjct:    1 MNKAGGSTVKYMLAP-WTKAQNVTVGLYDSPQWLEGKDFAQDFLGDENSLMWGAYTEGLRPFGGLGLRECKWFTIFRHPIPRLVSAYFYCKKKPQDGLCATVALDANADDTDLYAFAEHWGDFGLRQFALAFVLP---EELLANKVKYDATGICTPYHGKRSCPGWYELKLYLQQQLDEQEQGEGSRGWDGSGAAASGAATISHLLQPVQELLTNEYAAVGVLEQWETSLLLFNEALGMPGFDWPETFGSIGKK---NSDGTFHNEEAEMLLRSWTDPRLRRYLSLDLLLYDYAVSVHNQQVDKYGL 300          
BLAST of mRNA_Ecto-sp8_S_contig9572.31203.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 4.090e-38
Identity = 96/301 (31.89%), Postives = 145/301 (48.17%), Query Frame = 2
Query:   11 CWIFMHMDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAAD-----VMASHWKLLHGGCVESLRSHK--GRSCKWLTIFRHPIARLLSAYDHCLGAPKDPVCPP----TESTGLAVFAELWGNFAMRQFALAAVSPSAVKEWAAQRQARTGTSMWYLVKEYLAR-----GGI---------------AEDEVLESMLEPVKGLLSTQYAAVGVAQELETTMVLFSKALSMEGLDWSSSWATLGINEEDKQDSEYDIAESEPFRQLLENPRIVSALRLDMSLYEHAVHVFKDQVAQFGI 820
            CW+FMH+ K G S  + +  +RW     ++D+++W+ GD F+A       +   W ++ GG  E+LR  +  G  C++ T+FRHPIAR++SAY +C     D  C       +   L  FA+ WGNFA+RQFAL  V    V+E              Y +K YL R     GG+                 D  L  +L+P   L+   Y AVG+ ++  TT+ LF   L M  ++W   +A  G +  D  + + +I   E  +Q   +  +   +RLD+ LYEHAV VF  Q    G+
Sbjct:  177 CWVFMHLQKCGGSTVKDLLEDRWGSRFFIYDSMRWKFGDEFSAKFGAKLALGDKWNVMTGGYTEALRLSEPVGAGCRFFTLFRHPIARMVSAYFYCRSVSGDVACASEVMQAKDVDLLTFAKHWGNFALRQFALGFVPSDDVQE--------------YQLKMYLERPQKEDGGVLGQREAMTAHQDAAATPDAPLYELLQPAMDLVRDGYVAVGILEQWNTTLRLFDHTLDMPVMNWEEQFAESGKHHVDIVNKQLEI---ETLQQAWTDSELKKYMRLDLLLYEHAVDVFHQQARSHGL 460          
BLAST of mRNA_Ecto-sp8_S_contig9572.31203.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 1.940e-37
Identity = 97/310 (31.29%), Postives = 151/310 (48.71%), Query Frame = 2
Query:    5 DSCWIFMHMDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAAD-----VMASHWKLLHGGCVESLRSHK--GRSCKWLTIFRHPIARLLSAYDHCLGAPKDPVCPP----TESTGLAVFAELWGNFAMRQFALAAVSPSAVKEWAAQRQART-------GTSMWYLVKEYLARG--------GIAEDEVLE------------SMLEPVKGLLSTQYAAVGVAQELETTMVLFSKALSMEGLDWSSSWATLGINEEDKQDSEYDIAESEPFRQLLENPRIVSALRLDMSLYEHAVHVFKDQVAQFGI 820
            D CW+FMH+ K G S  + +    +     ++D+ QW+ GD  +A+          W ++ GG  E+LR  +     C++ T+FRHPIAR++SAY +C     D  C       +   L  FA+ WGNFA+RQFAL  V    V+E+    +A+          + WY +K YL R         G +E   +E             +L+P   L+ + Y AVG+ ++  TT+ LF  AL + G+ W + +A  G    D ++      ESE  +Q   +  +   +RLD+ LYEHAV VF +Q   +G+
Sbjct:  154 DQCWVFMHLQKCGGSTVKYMLRRSYGSRYSIYDSNQWKLGDDISANFGVKLARGETWNVMAGGYTEALRRSEPVDAGCRFFTLFRHPIARMVSAYFYCRSTLGDAACASEVVDAKDVDLLTFAKHWGNFAVRQFALGFVPSDGVQEYIRTPEAQALHDFDLKKIAGWYQLKMYLERPEKGDWGVPGQSEAMTVEHDAAATLEAPLYDLLQPAMDLIRSGYVAVGILEQWNTTLHLFDHALEIPGMYWGAQFAEGGKQRVDYKNKRL---ESETLKQAWTDSELKKYMRLDLLLYEHAVDVFHEQARGYGL 460          
BLAST of mRNA_Ecto-sp8_S_contig9572.31203.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 3.180e-29
Identity = 85/289 (29.41%), Postives = 143/289 (49.48%), Query Frame = 2
Query:    8 SCWIFMHMDKSGASGARRVATERWRKDELV---FDTVQWRRGDGFAADVMASHWKLLHGGCVESLRSHKG-RSCKWLTIFRHPIARLLSAYDHCLGAPKDPVCPPT----ESTGLAVFAELWGNFAMRQFALA-------AVSPSAVKEWAAQR---QARTGTSMWYLVKEYLARGGIAEDEVLESMLEPVKGLLSTQYAAVGVAQELETTMVLFSKALSMEGLDWSSSWATLGINEEDKQDSEYDIAESEPFRQLLENPRIVSALRLDMSLYEHAVHVFKDQVAQFGI 820
            +CW++  M+K+G +  RR+  +           F   Q+  GD     ++     L+ G   E LR +     CKW T+ RHPIARL+SA+++C   P D +C       E   +  FAE WGN  + QFALA        V+      W   +   + R G S        ++   + ++  +  +L+PV+ LL ++YAAVG+ ++ ET+M+LF  AL + G +W+S+ A+          ++ D+  +      + +P +   L LD+ LYEHA  V K Q++++G+
Sbjct:   36 ACWVYTDMNKAGGTSIRRMIKDYAAATNTTVGEFTHTQYNAGDRGVQQILDRRPSLIWGAYTEGLRPYATVLGCKWFTMVRHPIARLVSAFNYCGIVPSDQLCATRIHKPEDGDIYDFAEHWGNHGVVQFALAFEDLNDILVTEVKSPPWYKAKLYFEGRLGPSGKTSTSANISTKDVCQNVWMPEILQPVEELLRSKYAAVGILEQWETSMMLFDHALQLPGFNWTSTSASSTPRNVHDSKAKNDLLVAS-----MTDPVLKQILWLDILLYEHACSVHKAQLSRYGL 319          
BLAST of mRNA_Ecto-sp8_S_contig9572.31203.1 vs. uniprot
Match: A0A6H5JNJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 6.110e-27
Identity = 85/295 (28.81%), Postives = 145/295 (49.15%), Query Frame = 2
Query:    8 SCWIFMHMDKSGASGAR---RVATERWRKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRSHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPVCPPT----ESTGLAVFAELWGNFAMRQFALAAVSPSAVKEWAAQRQARTGTSMWYLVKEYL------------ARGGIAEDEV----LESMLEPVKGLLSTQYAAVGVAQELETTMVLFSKALSMEGLDWSSSWATLGINEEDKQDSEYDIAESEPF-RQLLENPRIVSALRLDMSLYEHAVHVFKDQVAQFGI 820
            +CW+F H +K+G +  +   R   E   +   +  +  + RGD    D++     L+ GG  E LR+   + CKW T+ RHPIARL+SA+ +C G  +D +C       E   +  FA+ WGN+A+ QFAL  V    +  +A +  A      W+  K Y             A      DE     +  +L+PV+ LL + YAAVG+ +  + +M+LF  AL + G +W+ + A+L   +     S+  I E +      + +P +   + LD+ LYE+A  + ++Q+ ++ +
Sbjct:   36 TCWVFTHNNKAGGTTVKTHLRNYAESRNETVALCHSDWYARGDKGIQDLLNDKPVLIAGGYAEGLRTSAFQGCKWFTMMRHPIARLISAFYYCSGGNRDQLCAANIHKPEDGDIYDFAKHWGNYALLQFALGVVDQHEI--FAEEVDAPA----WFKAKLYFEGRLGYPGNMSTATNRTTHDEWQSVWIPDILQPVEELLRSNYAAVGILEHWQRSMMLFDHALEIPGFNWTVASASLSPRK-----SQNKIVEKKAMLAAAMTDPVLRQYVWLDLLLYEYACSLHEEQLRRYDL 319          
BLAST of mRNA_Ecto-sp8_S_contig9572.31203.1 vs. uniprot
Match: F0Y323_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y323_AURAN)

HSP 1 Score: 61.2 bits (147), Expect = 6.070e-6
Identity = 53/192 (27.60%), Postives = 74/192 (38.54%), Query Frame = 2
Query:   80 RKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRSHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPVCPPTESTGLAV-----FAELWGNFAMRQFALAA--VSPSAVKEWAAQRQARTGTSMWYLVKEYLARGGIAEDEVLESMLEPVKGLLSTQYAAVGVAQELETTMVLFSKALSMEGLDWS 634
            R D+  FD    R  D    D  A   + L+GG   S  +  G SC W+T FR P+ARL+SA  HC     DP+C    +   A       A  WGNF      LA      +A +     R+      +W   +  L  G     E   + L  V   L   +  V V +  E +M L    + +    W+
Sbjct:  671 RCDDANFDWASKRCPD---LDPAAGANRWLNGGYALS-HAAAGPSCAWITNFREPVARLVSAQFHCTLHDHDPLCGDRPAAWFAAANASRMARYWGNFGFTNLLLAPRFAGTAAPRRDMRARRRDGAPKVWQRWRAALGGGDDPRTEAGAANLRRVVAALGDLFDVVVVVERWEDSMALLDCRVPLRDGTWA 858          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9572.31203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JQM0_9PHAE5.970e-18295.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU75_ECTSI1.530e-17895.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G715_ECTSI7.850e-4633.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JY77_9PHAE1.330e-3932.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS84_ECTSI2.360e-3834.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G716_ECTSI4.090e-3831.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FWQ3_ECTSI1.940e-3731.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQY7_9PHAE3.180e-2929.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNJ0_9PHAE6.110e-2728.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0Y323_AURAN6.070e-627.60Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9572contigEcto-sp8_S_contig9572:472..2532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score164.1
Seed ortholog evalue9.1e-38
Seed eggNOG ortholog2880.D7G715
Model size2061
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2CYGC@1,2S47N@2759
Cds size804
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145318.9598331-UTR-Ecto-sp8_S_contig9572:471..4931681145318.9598331-UTR-Ecto-sp8_S_contig9572:471..493Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9572 472..493 +
1681145318.9828558-UTR-Ecto-sp8_S_contig9572:1297..25321681145318.9828558-UTR-Ecto-sp8_S_contig9572:1297..2532Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9572 1298..2532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145318.9720576-CDS-Ecto-sp8_S_contig9572:493..12971681145318.9720576-CDS-Ecto-sp8_S_contig9572:493..1297Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9572 494..1297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9572.31203.1prot_Ecto-sp8_S_contig9572.31203.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9572 494..1297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9572.31203.1

>prot_Ecto-sp8_S_contig9572.31203.1 ID=prot_Ecto-sp8_S_contig9572.31203.1|Name=mRNA_Ecto-sp8_S_contig9572.31203.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=268bp
MHMDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMASHWKLLH
GGCVESLRSHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPVCPPTEST
GLAVFAELWGNFAMRQFALAAVSPSAVKEWAAQRQARTGTSMWYLVKEYL
ARGGIAEDEVLESMLEPVKGLLSTQYAAVGVAQELETTMVLFSKALSMEG
LDWSSSWATLGINEEDKQDSEYDIAESEPFRQLLENPRIVSALRLDMSLY
EHAVHVFKDQVAQFGIE*
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mRNA from alignment at Ecto-sp8_S_contig9572:472..2532+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9572.31203.1 ID=mRNA_Ecto-sp8_S_contig9572.31203.1|Name=mRNA_Ecto-sp8_S_contig9572.31203.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2061bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9572:472..2532+ (Ectocarpus species8 EcLAC_412)
CGAAGATTCGTGTTGGATATTCATGCATATGGACAAGAGCGGCGCTTCAG GGGCTCGGCGTGTCGCCACGGAGCGTTGGCGGAAAGATGAGCTCGTGTTC GACACTGTCCAGTGGCGCCGGGGTGACGGCTTTGCGGCGGACGTCATGGC TTCTCACTGGAAACTCCTGCACGGAGGCTGCGTGGAGAGCCTTCGGAGCC ACAAGGGACGGTCGTGCAAGTGGCTCACCATCTTCAGGCACCCGATCGCG CGTCTTTTATCCGCGTATGACCATTGCCTGGGGGCCCCCAAGGACCCCGT TTGCCCACCCACCGAATCGACGGGGTTGGCAGTATTTGCGGAACTCTGGG GTAACTTTGCCATGAGGCAATTCGCGCTGGCGGCCGTATCACCGTCCGCA GTGAAGGAATGGGCAGCGCAAAGGCAAGCACGAACGGGTACGTCCATGTG GTACCTCGTCAAGGAGTACCTGGCTCGGGGAGGGATAGCTGAAGACGAGG TGCTCGAGAGCATGCTGGAGCCTGTGAAGGGGCTGCTTAGCACGCAGTAC GCTGCTGTCGGCGTAGCCCAGGAGCTGGAAACGACGATGGTTCTGTTTAG CAAGGCGCTATCTATGGAAGGTCTGGACTGGTCGTCCTCGTGGGCGACAC TCGGCATCAATGAGGAAGACAAACAAGATTCAGAGTACGACATCGCTGAA TCCGAACCATTTCGCCAGCTTCTGGAGAATCCTAGAATTGTTTCTGCCCT ACGGTTGGATATGTCTCTCTACGAGCATGCCGTGCACGTATTCAAGGATC AAGTTGCCCAATTTGGAATTGAGTAAGGATGACTGGCTATTGCAGGCCGT AGTTTCGATACCATGGTTGTTTTCGAGAAGTGCTGGAACCAACGTTGGAG CACCTACGGAACCGGCCGCATTCAGATTTTTAGCGCTGTACCTGGAAGGG CTTAAACCTGTACAGGGAGGGGCGGTGCATGACTCCATCCATATTTTAGT GGTCGCAAAAGTTGGCTTGTTTTGAATATCTTGTCTTGCTTGCGAACGTC CTAAGCCCGGATGCATGCATACGGGATTTGTTTTATGCCCACACTTCACG CTGTTGTGTGTCGAGAGATGCACAGCACATGCCACACCTACGATAACATT AGGGTGGCATCACCCCCCTACAGTAGAAGCGTTTTTTGTTTGTTTGTTGG GTATTTCGCTTCGCGGTGGTATTTGCGGAAGGAAGTGTTGGAGATTATTT GAATTCTGTTATTTTGACGTCTCTAGTTCTTCTTCTTATTATTTTTATTA TGTTTTGGAGTATTTGTGAACCGGGCGCCGAAGGCAGGGCTCGAGCGGTT GTAGAGCGTGTTTTGTTGTGTTTAGGGAACGGTCCGTACCAACGCGTCCC GTGGCACTGGCCCGCCACATTGGATATCTATTGGGAGGACGGATACCCGC CTCTTCCCACAGCATGCTTAATAGGTCCCCGATTTTCTTTCATTCCCTCA GCCTTTCTGTTTGCACACTTGAGATAGTGTACGTCGGCTCCTTCTCTCCC GAGTCTGTAGCCGCCTTGTACTTCTGCTTGGGGCACCGTGCTCTGTAGCT TCCTTTCGCATTGGTGTTCTGATTGTAATTTCGGCCTCTAGTCGATCCTT TGGGGTGCTTCGGTGTCAGCGTCGGAGCTTCAGCGCCCCTCCCAGCTTTG TTCCCTGTTGCGGGCCATAGACTATGTGTTCGGGGATTCTTAGTCGTAAC GTACAGTCTTGTAGCATTTGTGGCGTGAGGTTGGATCTGTTGTTCCGATT CTCGCGCAATCAATTATGAATTATTAATCGTGTTTGATTGCAGAACGCGC CACCACGTAGGAACCGCTTTTTTTGGGTGAGGCTCGACGCTTGTTGTTGG CACATGTTCCTTGCTCCACGTTCTTACTATGGGTAAGCATCCACCTAGGA TAAACGGGGTTCTTGTTCGACGCCGATTGCCCCATGCAGAGGATGCAGGT CTTTCTGGCAGATTTCAACGCGAGACTACAGTACATTCAGTACAAGAGCG TATCGACCCCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9572:472..2532+

>mRNA_Ecto-sp8_S_contig9572.31203.1 ID=mRNA_Ecto-sp8_S_contig9572.31203.1|Name=mRNA_Ecto-sp8_S_contig9572.31203.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9572:472..2532+ (Ectocarpus species8 EcLAC_412)
ATGCATATGGACAAGAGCGGCGCTTCAGGGGCTCGGCGTGTCGCCACGGA
GCGTTGGCGGAAAGATGAGCTCGTGTTCGACACTGTCCAGTGGCGCCGGG
GTGACGGCTTTGCGGCGGACGTCATGGCTTCTCACTGGAAACTCCTGCAC
GGAGGCTGCGTGGAGAGCCTTCGGAGCCACAAGGGACGGTCGTGCAAGTG
GCTCACCATCTTCAGGCACCCGATCGCGCGTCTTTTATCCGCGTATGACC
ATTGCCTGGGGGCCCCCAAGGACCCCGTTTGCCCACCCACCGAATCGACG
GGGTTGGCAGTATTTGCGGAACTCTGGGGTAACTTTGCCATGAGGCAATT
CGCGCTGGCGGCCGTATCACCGTCCGCAGTGAAGGAATGGGCAGCGCAAA
GGCAAGCACGAACGGGTACGTCCATGTGGTACCTCGTCAAGGAGTACCTG
GCTCGGGGAGGGATAGCTGAAGACGAGGTGCTCGAGAGCATGCTGGAGCC
TGTGAAGGGGCTGCTTAGCACGCAGTACGCTGCTGTCGGCGTAGCCCAGG
AGCTGGAAACGACGATGGTTCTGTTTAGCAAGGCGCTATCTATGGAAGGT
CTGGACTGGTCGTCCTCGTGGGCGACACTCGGCATCAATGAGGAAGACAA
ACAAGATTCAGAGTACGACATCGCTGAATCCGAACCATTTCGCCAGCTTC
TGGAGAATCCTAGAATTGTTTCTGCCCTACGGTTGGATATGTCTCTCTAC
GAGCATGCCGTGCACGTATTCAAGGATCAAGTTGCCCAATTTGGAATTGA
GTAA
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