mRNA_Ecto-sp8_S_contig95670.31188.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig95670.31188.1
Unique NamemRNA_Ecto-sp8_S_contig95670.31188.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig95670.31188.1 vs. uniprot
Match: A0A6H5KXH5_9PHAE (CMD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXH5_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 4.010e-56
Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 1 
Query:    1 MPEGSTVAAMDQKAIVLRKETSERDRILDRWADAEALQLTDEEANLNEYQRKNLKLLFGETGFNPPVPARNPISVAMHNPRFSAALWAVNTEAYRRKGLV 300
            MPE ST AAMDQ+AIVLRKETSERDRILD WADAEALQLTDEEANLNEYQRKNLKLLFGETGFNPPVPARNPISV MHNPRFSAALWAVNTEAYRRKGL+
Sbjct:    1 MPEASTAAAMDQEAIVLRKETSERDRILDNWADAEALQLTDEEANLNEYQRKNLKLLFGETGFNPPVPARNPISVTMHNPRFSAALWAVNTEAYRRKGLL 100
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig95670.31188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXH5_9PHAE4.010e-5694.00CMD domain-containing protein n=2 Tax=Ectocarpus T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig95670contigEcto-sp8_S_contig95670:276..575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size300
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145318.19111-CDS-Ecto-sp8_S_contig95670:275..5751681145318.19111-CDS-Ecto-sp8_S_contig95670:275..575Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95670 276..575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig95670.31188.1prot_Ecto-sp8_S_contig95670.31188.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig95670 276..575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig95670.31188.1

>prot_Ecto-sp8_S_contig95670.31188.1 ID=prot_Ecto-sp8_S_contig95670.31188.1|Name=mRNA_Ecto-sp8_S_contig95670.31188.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=100bp
MPEGSTVAAMDQKAIVLRKETSERDRILDRWADAEALQLTDEEANLNEYQ
RKNLKLLFGETGFNPPVPARNPISVAMHNPRFSAALWAVNTEAYRRKGLV
back to top

mRNA from alignment at Ecto-sp8_S_contig95670:276..575+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig95670.31188.1 ID=mRNA_Ecto-sp8_S_contig95670.31188.1|Name=mRNA_Ecto-sp8_S_contig95670.31188.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=300bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95670:276..575+ (Ectocarpus species8 EcLAC_412)
ATGCCAGAAGGAAGCACAGTAGCAGCAATGGACCAGAAGGCTATCGTTCT
CCGCAAGGAAACGAGCGAACGCGACCGCATCCTGGACCGTTGGGCCGACG
CGGAAGCTCTCCAGCTAACGGACGAAGAGGCCAATCTGAACGAATACCAG
CGCAAGAATCTCAAGCTGCTCTTTGGAGAGACAGGTTTCAACCCCCCGGT
GCCAGCCAGGAACCCCATCAGTGTAGCCATGCACAACCCGAGGTTCAGCG
CGGCACTCTGGGCAGTCAATACGGAAGCGTATCGCCGGAAAGGGCTGGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig95670:276..575+

>mRNA_Ecto-sp8_S_contig95670.31188.1 ID=mRNA_Ecto-sp8_S_contig95670.31188.1|Name=mRNA_Ecto-sp8_S_contig95670.31188.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95670:276..575+ (Ectocarpus species8 EcLAC_412)
ATGCCAGAAGGAAGCACAGTAGCAGCAATGGACCAGAAGGCTATCGTTCT
CCGCAAGGAAACGAGCGAACGCGACCGCATCCTGGACCGTTGGGCCGACG
CGGAAGCTCTCCAGCTAACGGACGAAGAGGCCAATCTGAACGAATACCAG
CGCAAGAATCTCAAGCTGCTCTTTGGAGAGACAGGTTTCAACCCCCCGGT
GCCAGCCAGGAACCCCATCAGTGTAGCCATGCACAACCCGAGGTTCAGCG
CGGCACTCTGGGCAGTCAATACGGAAGCGTATCGCCGGAAAGGGCTGGTG
back to top