mRNA_Ecto-sp8_S_contig956.31177.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig956.31177.1
Unique NamemRNA_Ecto-sp8_S_contig956.31177.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig956.31177.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 382 bits (982), Expect = 3.340e-118
Identity = 188/247 (76.11%), Postives = 208/247 (84.21%), Query Frame = 2
Query:  905 LSELWDHTQHIQDIGHAMGASSMPGGHIPGQLCRLLDILDRTRAMGTFPGLDRNPWAEPPESIVAKGPNGIRSYFKDLYAEPCWVQRSSVKVVIVGQEGAGKTSLRQSMKANKATPTGKWREESTVSADVEPMELGGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAEAFGQQRGSDH-DPLEEDCRKLEKLRVCEWLRSISRRVPDNNVILVATKCDLVRGKAIEVGRRLEQASRMWLNSWV 1642
             + LWDHTQ++QD+ H  G   MPGG +P QLCRLL +LDR   +     L  NPWAEPPESIVAKGP  IR YF+DLYAEPCW++RSSVKVV+VGQEGAGKTSLRQSMKANKATPTG+W+EESTV ADVEPMEL GSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNA  FGQQ GSD+ D +EEDCRKL+ LRVC+WLRSISRRVP N+VILVATKCDLV G A E GRRLE A RMWL++WV
Sbjct:   38 FAALWDHTQNVQDVHHKEGGDIMPGGAMPSQLCRLLVVLDRLSGVNL--ALLGNPWAEPPESIVAKGPKSIRGYFEDLYAEPCWIKRSSVKVVLVGQEGAGKTSLRQSMKANKATPTGEWKEESTVFADVEPMELEGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAGEFGQQLGSDNVDQVEEDCRKLQALRVCDWLRSISRRVPGNDVILVATKCDLVSGNAEETGRRLEHACRMWLSTWV 282          
BLAST of mRNA_Ecto-sp8_S_contig956.31177.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 384 bits (985), Expect = 5.180e-117
Identity = 191/247 (77.33%), Postives = 208/247 (84.21%), Query Frame = 2
Query:  905 LSELWDHTQHIQDIGHAMGASSMPGGHIPGQLCRLLDILDRTRAMGTFPGLDRNPWAEPPESIVAKGPNGIRSYFKDLYAEPCWVQRSSVKVVIVGQEGAGKTSLRQSMKANKATPTGKWREESTVSADVEPMELGGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAEAFGQQRGSDHD-PLEEDCRKLEKLRVCEWLRSISRRVPDNNVILVATKCDLVRGKAIEVGRRLEQASRMWLNSWV 1642
            L+ LWDHT ++QDI H  GA  M GG IP QLCRLLD+LDR  A G    L+ NPWAEPPESIVAKGP  IR YF+DLYAEPC V+RSSVKV++VGQEGAGKTSLRQSMK N+ATPTG W+EESTV ADVEPMEL GSSVRVYDCAGQ AYTGLLQMFLTPRSVCVLVCNAEAFGQQR +D    + EDCRKLE+LRVCEWLRSI+RRVPDN+ ILVATKCDLV G A EVGRR+EQA RMWL SWV
Sbjct:  179 LTALWDHTHYLQDIVHEEGAHGMSGGRIPSQLCRLLDVLDR--AEGGVLSLEDNPWAEPPESIVAKGPKSIRGYFEDLYAEPCRVERSSVKVILVGQEGAGKTSLRQSMKTNEATPTGDWKEESTVFADVEPMELEGSSVRVYDCAGQAAYTGLLQMFLTPRSVCVLVCNAEAFGQQRANDTGGQIMEDCRKLEELRVCEWLRSIARRVPDNDAILVATKCDLVGGNAAEVGRRMEQACRMWLASWV 423          
BLAST of mRNA_Ecto-sp8_S_contig956.31177.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE)

HSP 1 Score: 373 bits (958), Expect = 4.100e-115
Identity = 187/271 (69.00%), Postives = 214/271 (78.97%), Query Frame = 2
Query:  839 GPVPPELGDLGTLGWVNFADNNLSELWDHTQHIQDIGHAMGASSMPGGHIPGQLCRLLDILDRTRAMGTFPGLD--RNPWAEPPESIVAKGPNGIRSYFKDLYAEPCWVQRSSVKVVIVGQEGAGKTSLRQSMKANKATPTGKWREESTVSADVEPMELGGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAEAFGQQ-RGSDHDPLEEDCRKLEKLRVCEWLRSISRRVPDNNVILVATKCDLVRGKAIEVGRRLEQASRMWLNSWV 1642
            G +P ELG LG L  ++ A N LS LWDHTQ+ +DIGH  G   M GG +P QLCRLLD+LD  +  G F  L    NPW EPPE IV KGP  +R YF+DLYAEPC ++RS VKVV+VGQEGAGKTSLRQSMKAN+ATPTG+W+EESTV ADVE MEL GSSVRVYDCAGQVAYTGLLQMFLTPR+VCVLVCNA  FGQQ R   +D + EDCRKLE+LRVC+WLRSISRRVP+N+VILVATKCDL  G A ++G R+E A R WL+SWV
Sbjct:   82 GAIPRELGRLGALEKLDLAHNKLSALWDHTQNAEDIGHDEGTQRMSGGPMPSQLCRLLDVLDDIQ-QGKFQSLKLGTNPWVEPPEPIVVKGPKAVRGYFEDLYAEPCRIKRSIVKVVLVGQEGAGKTSLRQSMKANEATPTGEWKEESTVFADVEAMELEGSSVRVYDCAGQVAYTGLLQMFLTPRAVCVLVCNAGKFGQQTRSESNDQVGEDCRKLEELRVCDWLRSISRRVPNNDVILVATKCDLAGGNAGKIGARMEHACRRWLSSWV 351          
BLAST of mRNA_Ecto-sp8_S_contig956.31177.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE)

HSP 1 Score: 356 bits (914), Expect = 9.610e-111
Identity = 178/248 (71.77%), Postives = 204/248 (82.26%), Query Frame = 2
Query:  902 NLSELWDHTQHIQDIGHAMGASSMPGGHIPGQLCRLLDILDRTRAMGTFPGLDRNPWAEPPESIVAKGPNGIRSYFKDLYAEPCWVQRSSVKVVIVGQEGAGKTSLRQSMKANKATPTGKWREESTVSADVEPMELGGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAEAFGQQRGSDH-DPLEEDCRKLEKLRVCEWLRSISRRVPDNNVILVATKCDLVRGKAIEVGRRLEQASRMWLNSWV 1642
            NL+ LWDHTQ++QD+ H  G  SM GG +P QLCRLLD+L+ +R  G    L+ NPWAEPPESIVAKG   +R YF+DL+A+ C ++R  VKVV+VGQEGAGKTSLRQSMKANKATPTG+W+EESTV ADVEPM+L GSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNA  F QQ GSD+ D +EEDCRKLE LRVC+WLRSIS RVP N+VILVATKCDLV G   E G+R+E A R WL+SWV
Sbjct:   86 NLTALWDHTQNVQDVNHD-GGDSMSGGPMPSQLCRLLDLLE-SREAGRHLSLNSNPWAEPPESIVAKGLKSVRGYFEDLFADHCRIKRRGVKVVLVGQEGAGKTSLRQSMKANKATPTGEWKEESTVFADVEPMKLEGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAGEFRQQLGSDNIDQVEEDCRKLEGLRVCDWLRSISCRVPGNDVILVATKCDLVNGNVEETGQRIEHACRTWLSSWV 331          
BLAST of mRNA_Ecto-sp8_S_contig956.31177.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 360 bits (924), Expect = 2.710e-109
Identity = 185/294 (62.93%), Postives = 215/294 (73.13%), Query Frame = 2
Query:  836 TGPVPPELGDLGTLGWVNFADNNL------------------------SELWDHTQHIQDIGHAMGASSMPGGHIPGQLCRLLDILDRTRAMGTFPGLDRNPWAEPPESIVAKGPNGIRSYFKDLYAEPCWVQRSSVKVVIVGQEGAGKTSLRQSMKANKATPTGKWREESTVSADVEPMELGGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAEAFGQQ-RGSDHDPLEEDCRKLEKLRVCEWLRSISRRVPDNNVILVATKCDLVRGKAIEVGRRLEQASRMWLNSWV 1642
            TG +P ELG L  L ++  ++N+L                        S LWDHTQ++QD     G   M GG +PGQLCRLLD+L+R + +     LD NPWAEPPESIV KG   +RSYF+DLYAEPC ++R S KVV+VGQEGAGK+SLRQSMKAN+ TPTG+W+EESTV ADVEPMEL GSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNA AFGQQ    +   +EEDCRKLE+LRVC+WLRSISRRVP N+VILV TKCDL  G A E+G R+E A R WL+SWV
Sbjct:   13 TGSIPKELGALQELTFLGLSNNHLTXXXXXXXXXXXXXXXXXXXXXQISALWDHTQNVQDEDQDKGGCGMSGGSMPGQLCRLLDVLERAKIV-----LDGNPWAEPPESIVDKGRKSMRSYFEDLYAEPCRIERISTKVVLVGQEGAGKSSLRQSMKANEPTPTGEWKEESTVFADVEPMELEGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAAAFGQQLERKNSGEVEEDCRKLEELRVCDWLRSISRRVPHNDVILVVTKCDLAGGNAAEIGERVEHACRTWLSSWV 301          
BLAST of mRNA_Ecto-sp8_S_contig956.31177.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 1.540e-108
Identity = 180/249 (72.29%), Postives = 204/249 (81.93%), Query Frame = 2
Query:  899 NNLSELWDHTQHIQDIGHAMGASSMPGGHIPGQLCRLLDILDRTRAMGTFPGLDRNPWAEPPESIVAKGPNGIRSYFKDLYAEPCWVQRSSVKVVIVGQEGAGKTSLRQSMKANKATPTGKWREESTVSADVEPMELGGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAEAFGQQRGSDHD-PLEEDCRKLEKLRVCEWLRSISRRVPDNNVILVATKCDLVRGKAIEVGRRLEQASRMWLNSWV 1642
            N L+ LWDHTQ+ Q +    G +   GG +P QLCRLLD+LDR  A G   GLD NPWAEPP SIV+KGP  IR YF+DLY E   VQR+SVK+++VGQEGAGKTSLRQSMKAN A PTG+W+EESTV ADVEPM+L GS VRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAEAFGQQRG D    ++EDCRKLE+LRVC+WLRS+SRRVP+N+VILVATKCDLV G A E GRR+EQA+R WL SWV
Sbjct:  151 NELTALWDHTQNAQHVEE--GGNRTLGGQLPSQLCRLLDVLDR--ATGGILGLDDNPWAEPPASIVSKGPTSIRGYFEDLYVESSRVQRNSVKIILVGQEGAGKTSLRQSMKANAAIPTGEWKEESTVFADVEPMQLEGSFVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAEAFGQQRGDDTGGQVKEDCRKLEELRVCDWLRSVSRRVPNNDVILVATKCDLVGGNAEEFGRRIEQATRTWLASWV 395          
BLAST of mRNA_Ecto-sp8_S_contig956.31177.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 360 bits (925), Expect = 4.330e-108
Identity = 179/245 (73.06%), Postives = 201/245 (82.04%), Query Frame = 2
Query:  914 LWDHTQHIQDIGHAMGASSMPGGHIPGQLCRLLDILDRTRAMGTFPGLDRNPWAEPPESIVAKGPNGIRSYFKDLYAEPCWVQRSSVKVVIVGQEGAGKTSLRQSMKANKATPTGKWREESTVSADVEPMELGGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAEAFGQQRGSDH--DPLEEDCRKLEKLRVCEWLRSISRRVPDNNVILVATKCDLVRGKAIEVGRRLEQASRMWLNSWV 1642
            LWDHTQ +QDI       SM GG +P QLCRLLD+LD   +   + GL  NPW EPPES+VAKGP  IR YF+DLYAEPC + RSSVKVV+VGQEGAGKTSLRQSMKANKA+PTGKW EESTV A+VEPMEL GSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNA  FGQ+RGS+   +  +EDCRKLE+LRVC+WLRSISRRVPDN+VILVATKCDLV G A E+G R+E + R WL+ WV
Sbjct:  324 LWDHTQDVQDIDPKERGDSMSGGTMPSQLCRLLDVLDPVPSR--YVGLGGNPWTEPPESVVAKGPKSIRGYFEDLYAEPCRITRSSVKVVLVGQEGAGKTSLRQSMKANKASPTGKWNEESTVFANVEPMELDGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAGEFGQRRGSEDCGEVEQEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLVGGNAGEIGSRMENSCRTWLSGWV 566          
BLAST of mRNA_Ecto-sp8_S_contig956.31177.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 360 bits (923), Expect = 9.270e-108
Identity = 181/252 (71.83%), Postives = 198/252 (78.57%), Query Frame = 2
Query:  908 SELWDHTQHIQDIGHAMGASSMPGGHIPGQLCRLLDILDRTRAMGTFP-------GLDRNPWAEPPESIVAKGPNGIRSYFKDLYAEPCWVQRSSVKVVIVGQEGAGKTSLRQSMKANKATPTGKWREESTVSADVEPMELGGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAEAFGQQRGSDH-DPLEEDCRKLEKLRVCEWLRSISRRVPDNNVILVATKCDLVRGKAIEVGRRLEQASRMWLNSW 1639
            S LWDHTQ++QD+ H     SMPGG +P QLCRLLDI D   A G           L  NPWAEPPESIVAKGP  IR YF+DLYAE C ++R  VKVV+VGQEGAGKTSLRQSMKANKAT TG+W+E STV ADVE MEL GSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNA  FG+Q GSD+ D +EEDCRKLE LRVC WLRSISRRVPD  VILVATKCDL  G A E+GRR+E+A R WL+SW
Sbjct:  250 SALWDHTQNVQDVDHKERGHSMPGGPMPSQLCRLLDIFDSVEAQGLNDTGIGPSLSLSENPWAEPPESIVAKGPKSIRGYFEDLYAEHCRIKRRGVKVVLVGQEGAGKTSLRQSMKANKATLTGEWKENSTVLADVESMELEGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAGEFGEQLGSDNIDQVEEDCRKLEALRVCNWLRSISRRVPDTEVILVATKCDLAGGNAWEIGRRMEKACRRWLSSW 501          
BLAST of mRNA_Ecto-sp8_S_contig956.31177.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 3.490e-107
Identity = 176/245 (71.84%), Postives = 203/245 (82.86%), Query Frame = 2
Query:  914 LWDHTQHIQDIGHAMGASSMPGGHIPGQLCRLLDILDRTRAMGTFPGLDRNPWAEPPESIVAKGPNGIRSYFKDLYAEPCWVQRSSVKVVIVGQEGAGKTSLRQSMKANKATPTGKWREESTVSADVEPMELGGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAEAFGQQRGSDHD--PLEEDCRKLEKLRVCEWLRSISRRVPDNNVILVATKCDLVRGKAIEVGRRLEQASRMWLNSWV 1642
            LW+HT +++D  H   + SM GG  P QLCRLLD+LDR         LD NPWAEPPESIVAKG   IR YF+DLYAEPC VQRSSVK+++VGQEGAGKTSLR+SMKA +ATPTG+W+EESTV ADVE MEL GSS+RVYDCAGQVAYTGLLQMFLTPR+VCV+VCNAE+FGQQRG+      ++EDCRKLE+LRVC+WLRSISRRVPDN+VILVATKCD V G A E+G+R+E ASRMWL SWV
Sbjct:  252 LWNHTLNVEDARHEEASHSMQGGSFPRQLCRLLDVLDRAEREVDL-NLDDNPWAEPPESIVAKGAKNIRGYFEDLYAEPCRVQRSSVKIILVGQEGAGKTSLRKSMKAKEATPTGEWKEESTVFADVERMELEGSSIRVYDCAGQVAYTGLLQMFLTPRAVCVIVCNAESFGQQRGTCETGGQVKEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDSVGGNAGEIGKRIELASRMWLASWV 495          
BLAST of mRNA_Ecto-sp8_S_contig956.31177.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 4.490e-97
Identity = 170/244 (69.67%), Postives = 195/244 (79.92%), Query Frame = 2
Query:  914 LWDHTQHIQDIGHAMGASSMPGGHIPGQLCRLLDILDRTRAMGTFPGLDRNPWAEPPESIVAKGPNGIRSYFKDLYAEPCWVQRSSVKVVIVGQEGAGKTSLRQSMKANKATPTGKWREESTVSADVEPMELGGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAEAFGQQRGSD-HDPLEEDCRKLEKLRVCEWLRSISRRVPDNNVILVATKCDLVRGKAIEVGRRLEQASRMWLNSWV 1642
            LWDHT + +D+G    A  M GG IP +L RLL+ LD     G    L  NPWAEPPESIV KG   IR YF+DLYAEPC VQR SVKVV+VGQEGAGKTSLRQSMKAN+ATPTG+W+EESTV ADV+PMEL GSSVRVYDCAGQV YTGLLQMFLTPRSVCVLVCN EAF Q+ GS+ +  ++EDCRKLE+LRVC WLRSISRRVP ++VILVATKCDL  G A ++G+RL  A R+WL++WV
Sbjct:  516 LWDHTCNAEDVGQER-AKRMSGGTIPSELRRLLETLD-----GADTDLGGNPWAEPPESIVTKGMESIRGYFEDLYAEPCRVQRRSVKVVLVGQEGAGKTSLRQSMKANEATPTGEWKEESTVFADVQPMELEGSSVRVYDCAGQVGYTGLLQMFLTPRSVCVLVCNVEAFEQRLGSEANGQVQEDCRKLEELRVCHWLRSISRRVPYSDVILVATKCDLACGNAGDMGKRLAHACRLWLSNWV 753          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig956.31177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZA1_ECTSI3.340e-11876.11LRR-GTPase of the ROCO family, incomplete sequence... [more]
D7FUC3_ECTSI5.180e-11777.33LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KSZ8_9PHAE4.100e-11569.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L650_9PHAE9.610e-11171.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G431_ECTSI2.710e-10962.93LRR-GTPase of the ROCO family, incomplete sequence... [more]
D7FUC9_ECTSI1.540e-10872.29LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LF46_ECTSI4.330e-10873.06LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LJS7_ECTSI9.270e-10871.83LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUD0_ECTSI3.490e-10771.84LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LCS7_ECTSI4.490e-9769.67LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig956contigEcto-sp8_S_contig956:2799..11722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score387.5
Seed ortholog evalue5.6e-105
Seed eggNOG ortholog2880.D7FUC3
Model size1643
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
Exons14
EggNOG OGs2CYK8@1,2S4YE@2759
EC3.2.1.21
Cds size885
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145317.0361822-CDS-Ecto-sp8_S_contig956:2798..30921681145317.0361822-CDS-Ecto-sp8_S_contig956:2798..3092Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig956 2799..3092 -
1681145317.0516672-CDS-Ecto-sp8_S_contig956:3815..39481681145317.0516672-CDS-Ecto-sp8_S_contig956:3815..3948Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig956 3816..3948 -
1681145317.0634663-CDS-Ecto-sp8_S_contig956:4329..45671681145317.0634663-CDS-Ecto-sp8_S_contig956:4329..4567Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig956 4330..4567 -
1681145317.0752304-CDS-Ecto-sp8_S_contig956:4938..50041681145317.0752304-CDS-Ecto-sp8_S_contig956:4938..5004Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig956 4939..5004 -
1681145317.0861783-CDS-Ecto-sp8_S_contig956:6618..66901681145317.0861783-CDS-Ecto-sp8_S_contig956:6618..6690Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig956 6619..6690 -
1681145317.0979407-CDS-Ecto-sp8_S_contig956:6885..69571681145317.0979407-CDS-Ecto-sp8_S_contig956:6885..6957Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig956 6886..6957 -
1681145317.1066847-CDS-Ecto-sp8_S_contig956:8046..80561681145317.1066847-CDS-Ecto-sp8_S_contig956:8046..8056Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig956 8047..8056 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145317.1165328-UTR-Ecto-sp8_S_contig956:8056..81931681145317.1165328-UTR-Ecto-sp8_S_contig956:8056..8193Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig956 8057..8193 -
1681145317.1275833-UTR-Ecto-sp8_S_contig956:8423..84951681145317.1275833-UTR-Ecto-sp8_S_contig956:8423..8495Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig956 8424..8495 -
1681145317.142079-UTR-Ecto-sp8_S_contig956:8689..87611681145317.142079-UTR-Ecto-sp8_S_contig956:8689..8761Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig956 8690..8761 -
1681145317.160835-UTR-Ecto-sp8_S_contig956:9722..97941681145317.160835-UTR-Ecto-sp8_S_contig956:9722..9794Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig956 9723..9794 -
1681145317.177615-UTR-Ecto-sp8_S_contig956:10179..102511681145317.177615-UTR-Ecto-sp8_S_contig956:10179..10251Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig956 10180..10251 -
1681145317.187915-UTR-Ecto-sp8_S_contig956:10704..107761681145317.187915-UTR-Ecto-sp8_S_contig956:10704..10776Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig956 10705..10776 -
1681145317.1979878-UTR-Ecto-sp8_S_contig956:11183..112551681145317.1979878-UTR-Ecto-sp8_S_contig956:11183..11255Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig956 11184..11255 -
1681145317.2079241-UTR-Ecto-sp8_S_contig956:11534..117221681145317.2079241-UTR-Ecto-sp8_S_contig956:11534..11722Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig956 11535..11722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig956.31177.1prot_Ecto-sp8_S_contig956.31177.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig956 2799..8056 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig956.31177.1

>prot_Ecto-sp8_S_contig956.31177.1 ID=prot_Ecto-sp8_S_contig956.31177.1|Name=mRNA_Ecto-sp8_S_contig956.31177.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=295bp
MAPGPIPKALRSLTKLETLWLSDNHLTGPVPPELGDLGTLGWVNFADNNL
SELWDHTQHIQDIGHAMGASSMPGGHIPGQLCRLLDILDRTRAMGTFPGL
DRNPWAEPPESIVAKGPNGIRSYFKDLYAEPCWVQRSSVKVVIVGQEGAG
KTSLRQSMKANKATPTGKWREESTVSADVEPMELGGSSVRVYDCAGQVAY
TGLLQMFLTPRSVCVLVCNAEAFGQQRGSDHDPLEEDCRKLEKLRVCEWL
RSISRRVPDNNVILVATKCDLVRGKAIEVGRRLEQASRMWLNSWV
back to top

mRNA from alignment at Ecto-sp8_S_contig956:2799..11722-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig956.31177.1 ID=mRNA_Ecto-sp8_S_contig956.31177.1|Name=mRNA_Ecto-sp8_S_contig956.31177.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=8924bp|location=Sequence derived from alignment at Ecto-sp8_S_contig956:2799..11722- (Ectocarpus species8 EcLAC_412)
GGTTTTCTCAAGAATGGCTTCGACCGATCTTGATGCACTGGTTGCCCTGT TTCGTTCGACCGGCGGGGCTAGATGGTGTGAGAAAGACGACGGGGACATC GCTGCTGAGCTACCAACATGGTCCGGCGTCGATCTCAACGACGAGGGCCG TGTGGTGCAGCTTTTTCTGAACGAAAACGACCTCCGAGGTGCTTTTACTG TTGATGCATGCTTCTGCCTAGAGATAGATTTGCTTGACGAGCCACAGGAA TTCATGGTCGGAGAGAGTGACTGGATTTGCTGCATGCCATGTATCTTGAA TACTTGCGTGTTAGATGGTAAAACACACCCTCCAAGCTGATACTTACGAG ATGCGGTTCGTTCGAAGCCTTTAGTTTCCCAGCTCGTCCGGAATAATTCC TGCTTGCTAGCACGAGATACTTAGCGAGGCAACCAGATTGTTTTCCCATT ATATTTCTGCCGTGCAGGCGTCATCCCCATGAAGCTAGGAGTCCTTGCCC TGCTCGAGATTCTTAACTTGGGCTCCAACAAACTCACAGGTAGGAGGAAT CCATTACGAAGTGCTCTCCCGAGTCCTAGAGAGGTTGCATAGCATGCTGC TAGAACAATGGGGATACTAGATAGAGTGGCACTCACTCGTGCGTTGGTGG GAGTATTTCCCGCTAACACCTTCTACAACGCCTGCTCGCCTGCTGGTGAA ACATTGTAGCAACCGGTTCCTCACCTGTAAGCTTGGTGATCTAGAGAAGC CTGCAGGTTTTCCTTAACTCGAGCATATCATGTCTTCCTGCTGTACTTGA GCAGGAAATTTCCCCACGGGCAAGGACCCGTGATCAAGCTGTAGGCACAG GCCACATGTTGTAGTCTACGAAGTCGTGAGACTCGTGGGAGTGCCATACA TGCCCGCGACCTTTAACCCTATTTTCCGATATCCAATGCCGTGCAGGTGC AATCCCGGCGTCGCTAGGACACCTCGGTAGCCTGCAGCAGCTCTACCTAT CTGGAAACGAGCTAACCGGTGAGGAAATGCGGCTTGCACGTCGTCGAAGG TCGCAACATTCGTTAACTGAGCCAACGCTGCTTTCGGTAAACGCTTGTAG AACAGTTCTACTTGGCAGTATTAGCCTACTGGCAAATTACAATACGAGTC ATCGTGAAAAATTCTGAGAATACCAAGACGCATGCAACGTGACTCGGTGC CAGTTGGTTGTTGCTAAGGACGGGGTATTCCAGCGCTGCAAGGTCCTTCA ACTCAGGCGGGATGGTACCTGTAGAAAACCAAGAGCCACGAACCTGGCGG GGAGTAGAGAAAGTTCATCACCCGGCTTATTGAAGATGTGGTGGTGCGTG AACCCTGTGGCAGCTACATGCTACATGTCCTAGAATCTTGACGGAACCTA TGTTCTAGATTCCTTTTCCCCTTGTTCTTGCAGCTTTTAAGCTGTCCCGT GGTATTGCGTTGCTTGTGCAGGACACATCCCCCCGGAGCTGGGAGATCTC ATCAACCTGCAAGTTCTTGTGCTGTCCGCCAATCAGCTTTCCGGTGAGAT TCATGAGCTTATAGGAAACTTGGACTGCTGGCTCCCCTAACATTGACGTG CTCAGCACCGCATAGGTGAGTACATTGGTGTACTTGTACAACATTCCTCT CCAGAAGACTGGTTGTTCCCAAGCAGAAGCTCCTCAGATGGCTAAGAAAC CCCAACTTCATGGGGATGGGTCCTGCTCTAGCAGTGCAGCAGTATGATGG TACGAAAATAGGATCGCGTCACCAAGATTGCCGATTTCTGGCACAGCTAA AACTCACCTGAGTGTGGGCGGGACGAGATGCGTATGTAGATCGATGCTCT AGGAAAAAAATAAACCGTGTTTAACGATATCACTCACTTACCGAACAACC CTTCCCATCGCCCAAAATACCAAAGCAGGCGAGATCCCGGCGTCACTAGG GCAGCTCGCCAAGCTGGAAACGCTCTCCCTCGACCGAAACAATCTCAGCG GTAGGTTTCTCCCGACATCTTGGGCGTGTACACGTCACTCACACCAGATA GCTTGGATCCCGCCGATGCAAAGACGGGATTTATGCATCTTGCTTCTACA GAAGTAAAAAAAGACTTGCTGTTCAATCTCCTGGGCTGACCATACAACTC GCTGCTGTAGAGGTAGAGGCGCTCCAAGGTCATAGTATTCCCGGCGAGAT GTGTCCTGTAAATGTGAGTGTCAAAGCAAGGCTATTTGTTGCTGGAATTC CGAAGAACAACTTCGTCGCCCTGTAGAACATCACCTACTCATCTACTCAC GCGTAGGCGAGTAACGCAATGATATTTGTGAATGCGGCCCACCAAGTGAA CAATCCCCCAAACAAGAACACAAAGCACCTGTGGTGCACAAAAAACTTTG GTAGTGCCCCGGTGACAACGTGTTTTTTTTTTTCTCCCCTTGCTTGAACG CCCCGTGTTTCTGTGTGACCGTCCCCGGGGCATTCACGGGGCAACCCATC GCCTTGCAGAGGCTTGCTGCTGCTGTTTTGTAGTTTTATATAACCGTTCC AAGACCTCAAACTGGAGCACCACCTCCCCGTTACTCCTGCCGACACAGAC CCAAGTGTGCTGCCGCCCTTGCTTTTGTTGTCGAATGTTCTATCGTAGAT GCTGCTTTTGGCCAACATGGTGGGTTCCAACGAGAGATGCCCACCCTAAG AATTTGTGTTTGCGTGTGTCCTGGGGAGGCCCCAAACAGAGAGTGTGATG GACATGGAGACCAAGGGCCTTTCGCTTGTAGAGGTGATCGTTTCGGTGGT GTTTTCATGCCCCTCTACCTGTGCGAACGCTCCTCCCGGTGGTATCTTGG CACGGAACCTTATTTTTCGCCCCGGGTGCATTCACTCGTTCCTGAAGTCG GATATCTCCGTGGCGCGAAAAACAATGTAAGTAAAAGGTTACGGCTGTAC CGCTTGAGCAGGACACATCCCCGTGGAGCTAGAAGCTCTCCGCGAGCTGA GGAAGCTCATGGTCGAAGACAACCAGCTTTCTGGTGAGGAGTGTGTGAGT AGCGTTACTTTCGTTGCTTGGACGCCTGTGGGTGAGAAAATCCCCGGGAA AATGCAAAACGGAAGGAGAGAAAAGAACGGAAAGTCTCTCAGCCGTGCGT GGGTACGTAGGCTGTAGCTAACGCGCTAGCGATGGTGTATCTCGCCCGCT AATTTATCATTTCCTCGCTCGCTGCAGGCCCCATCTCTCCGAAGCTGGGG AACTTGGCAGCACTTCAACACCTCGTTTTTAGCAACAACCGGCTAAGTGG TGAGTCAACACGCCGAAGTGTCATGGAATCCTCAGTGGTTTCTTGATGAA CTACAACCATTCATTTTTTCTAGGGTATTTTGCCCACGGGTCGCATAGGT GAGTGGGTGTCCAATAAGCGGTCGGTGGGACAAATTTCTGCCATCGCGTG GGTGAGTAGGCCCCTGATTCGCGTTCGGTAAAATAAAACTAAACTTTGCT CCATGGTTTGTTTTTATCTGCTTGTGCAGGTCCCATCCCCACAGAACTAG GATCTCTGAGCGCGCTCCAGCACCTGTGGCTCGACGGCAATCAGCTTTCA AGTGAAGTTCTGGTGGACGTCTAGAGCATTCTGGTCGACATTCGGAATGC CGTCAATTTCGGAGAGATGGCACCTGGTGCGATCATTATTCTTGTTTTTT TCGCACCCTGGTGTGATATCTCCGGCTGGTACCATGTCTCCGACCCCATT GCGGAAAGGCAAAGTATATCGTTTAGCTTTGAAGACATCCCGGTGCGATC TCTTCGACATGGGTGCCATGCCCAACTAAATTCGCAGAGCGGCCGCCCTA CTACTGCTAGAGCGGTGTTGTTTGCACGCACCCCGGTGTCATCTCCCCGG CCGGTGCAATCTCTCCTCTTGTTACCGTAGACGGAGTTGTAAAACCTTGC TATAGCTGACAGTACGGTAGACGTAGATCAGTCGAACGTTTTTTGTTTGT ATGCTGTGGGCGCATCACACGTATGTGTAGGTACCGGTAACGGCAACGGA CGCTGGTACGTATGCATAGCAGCTTTCCATGTAGCGAGTGGTCATGGTGC TGCGTGCCAGTGTTGCTATGGCGTGACAAGGACGGAGAACGACGATGTGG TTTCCATCTGGGGTGTGCCGGTACCTATTGTATCAGTTTGCAAGAGTACC TTGGATTTCCTTGTGTAAGGTAGGGTAGGTTGCAGCTTGTATGATGCGTG CTTGGTTGACACCGATTACATGAAACAATTGACATCCTGCGTGAACCGCG ACCGTACAAACTTAATCTCTCGACGGTTGATCCCCGCAAACTCTAACGGT GTTCACACGAGCTGTGTCATGTGACTGGTGCAGAGTTAGTAGCATCAGCG GTAGCGTTGTTTTTTCATTCGGCTGGACCAAGTGGACAACAACCCGATGT GTGCGGCGCAAACAAGCGGCATACATACATACAGTACAGGAGTAGCGCCC CGCTGATATCGTCACCACATGTAAAAGGTACAGTACCTCTTTTCGGGCAG CTCAAAAAGAGGCCAATCTTGGGTTTGGGGGTCGGTGAATGTGCGATCTC GCCCGGCCCGGTGCAGAAATCGAATTAAATCATGCCGTTCTTGCTTTTTT TTGTTTCCGCACCCCGGTGCCATCTCCCCGACCGGTGCCATGTCTCCGCC TCTTACGAGTAAAGTACCTTATTCACCTCGCGGAGTTCACTCTCTCTTTC CTCCCTTTCCTGAAGGGCCCATTCCCAAGGCGCTGAGATCTCTGACCAAG CTGGAGACGCTGTGGCTCTCAGACAATCACCTCACTGGTGAGGAGCGATC CAAGGAACACATGCCCCCGCCTCTCTCTTGTAAGGTGGTTGGGTCCAGCG CAAGCTCCTAGAAGGGCCCTGCATAAACCAACATGGAGAAAGCTTCTAGA ATACTTCTGGTACGTATTTGCGTGCACGTAGGAAGGCCATTAGCATCCCT CAGCTAAATCCATAGTTGCACTTTCCCTGCAGGCCCCGTCCCTCCGGAGC TGGGAGATCTCGGAACACTGGGGTGGGTCAATTTTGCAGATAACAATCTG AGCGGTGAGTGTTGCGTGTTGTTTACTGGACAGATCTGCAGAACTCGCAT ATATATATAAGCCCCACACACGCGCAGGTGGGGTCGATGTTCTAGAAAAT ACAGAATGGCATGCTGATTTTTTTCCACTGAAGGCTAGGGTGATTTTGTC CGAGCGGTAGCTTCTCGGGCTTGCTGAGAATTTCGCATTCGAGACGGGTG TATGATTGCGCCACTGAGTATTTCCGGTGTGATGAGGCATGCATGATTCC GCCGGCTTTAGTGTTCGAATTGTGCAATATCGGTCCTGCCGACGCCGGAT ACATGTTCTAGAGATTGATGTGGAACAACTAGAGGCCTCCGTACCTTTGA CGGTTTTGTCCTGGCCTGGGTGTCAGAAGAATTCCTAAAGAAGAGAAAGG TCCGTTTCTTTCATCCCGTAGAGTTGTTGTGATCAGCGAGCGTTCTAAGG AGTTGGTACAGTACGTGTGTCCATCGAGCACTTTGCCTAAATGACTCCGT GGTTATGTATGGTTACGTGCAAGCTGGGTTTTGTTCGTGTTCTTTGCCTA GTCCTTGTGTAGTGCGGTAGGAGGGTTACGAGAGTCGGGGCACCTAGTGA TTCCCAGAAATGCGAAGTTTTTCGAGAGCACCACACTAAATGCACTCCCT GTTGACGTTTGTGTTGTGTGGTGAAGCTTGGAACACAAGTTGTATTCATC CCGTTTTTGGTATAGCAGATTGCTCACCCATATTTTCTGCGACACTTCAA TAGCTTCAAACAGGCGAGCTAAATATCTCTCGGTTTCCTGGGCTTGTTTT CGGGGTCGGAAATCCTTGACCTGCATTTGTGTTATCCTGAAATCCCCTGC ACCATTGTTTTTCGGGCTTGTTCTTCACCTGGCATGTACTACCATCGCTT CCAGTATGTATCCTACGGCCTTTCCCTCTACGAACGAGCCTCGATGTCAG GTTCCTAGGAAGGTCCTCGGTGCTCGCCTTGATCGTCATCAACGGTTGTA CAATTCAGCAGATCCATCTCTCACGTGTAGATACGATACAAGCGCTTTCG ACAGCTAGACACGAAATCGAGGTTATTTTCCACCTCGCTCAGGGTTAGAC AAGCGATCTACGACGGCCGTAGAAGGTTTTCCAACTTAGCGAATGGGCAT CGCGGTGACAAGCGTATGCTTGCAAGACACACGCGGTACTTCGGGAAAAA TCGCATCCACGTACCATTTCGAACCCTTGGGAGCTGCACCCTACGTTTCG GGGGGAAGTCTAGTTCGCCGAGGTGTGTGCCTTCGAGGGCCAGACGGTGT CTTTCGAGGTGTCATTAGACAACAGACCTGACCAAAATCGCATGATCGCT GACTTCGCCCCCGCTCGTCCGTCCATATGTGCTCTGCTAGTCATGCTCCA ATTTGGAACGATTTCCTGCTCGATACACTCTTTTTGTAAGTCCTGCAACT TTTTTTCACCCGCACACGGGTGAGTGCCATGGGTGGGATGTTTCTGTCAG CGTGCGAGCTGCTGCCCAGAGATGGGCCTGTTATCGCTGACCCTGTTTGC GTTTTCCCTGCGACTCGATTGGGCTGTTTGCGTTTGTGTCTGGCTGGCTC TTTTGGCTCGCTCGACAGAACTCTGGGACCACACCCAACACATTCAAGAC ATTGGCCACGCGATGGGGGCTTCCAGTATGCCAGGTACGCCAACACACCA GTGTTAGTCTGCGAGTGGACCTACAATCGTAGTTTTGCGTGGATATGTGT ACCTCATTCGCTCACGAGTACTCGTTGCACAGGTTGTTCTCGATTCCGCC GGCAGTGACCGAATGCTCAGCGTCTCAGAATTGTGGGTTATTAGCAGTTA ACAGCTTTTAGGCAGGCGCAACCTCTCTTTGGCAACAACAATTCCCTACG GGTACCTGATAGATCGCCTCCTCTCTACGCCCACTGCACGATATGCTGAG TAGTCTGAGTGGGGACACAAAATATCGCCAGGCTGTAGCTTCCCACCGAT GGCTCGAGCGATGGTAACAGTTCCTCCAATTGGCATGCTGCTTATTGGTC GGTAGGTGGGCATATTCCAGGCCAGCTGTGCCGGTTGCTTGACATTCTAG ATCGTACGCGTGCTATGGGGACATTTCCTGGTCTGGATCGTAACCCGTGG GCTGAGCCGCCGGAGTCCATCGTGGCGAAAGGCCCGAACGGGATCAGATC TTACTTCAAGGATCTGTATGCTGAACCCTGTTGGGTCCAGCGCAGCAGCG TCAAGGTTGTGATCGTCGGACAGGAGGGTGCAGGAAAAACGAGGTTGGTG ACGTGATGATCCTGCTCGTGCTCTGTCGCACCGAGTGTTTCGGGCTGAAG TCTTTCCGCACCATAGCAGTAGTTGACGGGGTGATATCTTATCATTTGCT TGGCACAGAAGCAGACTTCTTTATCACAACGGGTGGTTTTAGCCATACGC CATATCATGGTCTTGTATTTTGCGCATTTCGCCGCTCGAACAATGCCTTG CAACATGATGCTGGAAAGGGAATTTTGCAAAAGAGACATCACGACGCCCC GCATTCGGGTGTTTTGGAAATCCGACCCGTGGCACCTGCATGCTTTACCC CGACAAAACTCTTCCGACATGCTCTCTCTGCTTCGCATTGCCCACCTGTT GCAACTCACCCCGACCTCGCACAGCTTGCGCCAGAGCATGAAGGCCAACA AGGCAACTCCTACGGGCAAATGGCGGGAGGAGAGCACCGTTTCGGCTGAC GTGGAGCCCATGGAGCTAGGAGGTTCATCAGTTCGGGTGTACGATTGCGC AGGACAGGTGAAAACGCTTGATAGAGTCGTTGCTTGAGACGTCGCCCTGA ACGACTTGTCATGCGCCGAATACATGCGAGCGTTAGCGCCTAGGTGCAGC GAGTCTTGGCGGGCAAGCGCAGCCATGAACTTGAACCAATTCCTTGTTTA CCCTCCGTAGAGAATGTTGTTAACGTGGCGCTTGACAACATGTAGTACCT CATACTTATTTGTCATGACCTACGCGTTTGTTGTACCACGGGCATGAGTG AACCACGTACCTCCTGGGTGATCTAAACTCGGGTGTCGAAACTGTTTGGG GTTGAGAAAAGCGCAGAGTTTCGTGATGCATTGCGGCGCTTTCACGAGTA TGTTGCTTTAGTGCTTGCCCTTGATCAGGGGAAGCCGGAGAGTGGGGCAC GACGGTGCTGCTTCTCCACAATATTCCACGTCTTTTATTACAACATGTAG GATCGGAGAAAGATTTGCTTGGTTTACAGGAAGCGGGACAAGGTGGCGCA ACTGGAGCATTGTCCTCAATCGTTTTCCATCACATGCGGAGTGGATCGGA AACCATTTTACACCCCTGATGTAGTCTTTGGTAGCTTCCCTAAATTCTAG CCTTCTTCGACTTGGAGCTCACTTGCTTACCTTGAGTGCCTTAGAATGGT AAATTGATTGTACAACCTTTTAGGCAACCACTGAGTGTTGTGACAATAGA GGCTTATCGCACAAAACGCGCGTTCGACAGGTTGCCTACACGGGGCTGCT GCAGATGTTCCTGACACCACGGTCTGTTTGCGTGCTAGTGTGCAACGCCG AGGCGTTCGGACAACAGCGAGGTAGCGATCATGATCCGTTGGAGGAAGAC TGCCGCAAGCTGGAGAAATTGCGTGTGTGCGAATGGTTGCGATCGATATC TCGACGCGTTCCCGACAACAACGTCATCCTCGTTGCTACCAAGTGTGATT TGGTGCGAGGGAAGGCTATTGAAGTTGGCAGGAGGTTGGAGCAGGCCAGT CGAATGTGGCTGAACAGCTGGGTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig956:2799..11722-

>mRNA_Ecto-sp8_S_contig956.31177.1 ID=mRNA_Ecto-sp8_S_contig956.31177.1|Name=mRNA_Ecto-sp8_S_contig956.31177.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp8_S_contig956:2799..11722- (Ectocarpus species8 EcLAC_412)
ATGGCACCTGGGCCCATTCCCAAGGCGCTGAGATCTCTGACCAAGCTGGA
GACGCTGTGGCTCTCAGACAATCACCTCACTGGCCCCGTCCCTCCGGAGC
TGGGAGATCTCGGAACACTGGGGTGGGTCAATTTTGCAGATAACAATCTG
AGCGAACTCTGGGACCACACCCAACACATTCAAGACATTGGCCACGCGAT
GGGGGCTTCCAGTATGCCAGGTGGGCATATTCCAGGCCAGCTGTGCCGGT
TGCTTGACATTCTAGATCGTACGCGTGCTATGGGGACATTTCCTGGTCTG
GATCGTAACCCGTGGGCTGAGCCGCCGGAGTCCATCGTGGCGAAAGGCCC
GAACGGGATCAGATCTTACTTCAAGGATCTGTATGCTGAACCCTGTTGGG
TCCAGCGCAGCAGCGTCAAGGTTGTGATCGTCGGACAGGAGGGTGCAGGA
AAAACGAGCTTGCGCCAGAGCATGAAGGCCAACAAGGCAACTCCTACGGG
CAAATGGCGGGAGGAGAGCACCGTTTCGGCTGACGTGGAGCCCATGGAGC
TAGGAGGTTCATCAGTTCGGGTGTACGATTGCGCAGGACAGGTTGCCTAC
ACGGGGCTGCTGCAGATGTTCCTGACACCACGGTCTGTTTGCGTGCTAGT
GTGCAACGCCGAGGCGTTCGGACAACAGCGAGGTAGCGATCATGATCCGT
TGGAGGAAGACTGCCGCAAGCTGGAGAAATTGCGTGTGTGCGAATGGTTG
CGATCGATATCTCGACGCGTTCCCGACAACAACGTCATCCTCGTTGCTAC
CAAGTGTGATTTGGTGCGAGGGAAGGCTATTGAAGTTGGCAGGAGGTTGG
AGCAGGCCAGTCGAATGTGGCTGAACAGCTGGGTC
back to top