mRNA_Ecto-sp8_S_contig9555.31173.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9555.31173.1
Unique NamemRNA_Ecto-sp8_S_contig9555.31173.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9555.31173.1 vs. uniprot
Match: D8LFC8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFC8_ECTSI)

HSP 1 Score: 628 bits (1619), Expect = 1.510e-224
Identity = 340/352 (96.59%), Postives = 342/352 (97.16%), Query Frame = 1
Query:    1 MDVDAGTILPRGELIKTIVAAEPTAAADARQSENISESDDDDGPRLEYVTQLEMSCDNKHLAAALSSLEVNLYSVETMALAGKVKGHTGPLTQLAFAPSDPSSFFSASEDGTVRGWDTRSLATTITLGESGEEEEVYSMALGYDGRLCATGKDCLIEFYDLRKAGKPLGSYSECHTDAVTQVRFHPHKRSFMLTGSEDGLMCFFDTEVSLEEDALDSVMNAECPVRSVGFFGPEGEGVYCCTNTETLSLWHAAGAQRIKDFGDVRAMARGENPADADVGAGRGXXXXXXXXXXXXXXXXXXXXXXXXAAGEDWGVAVDCIVDCQYDAAADRLRLVTSSYAGGACLATVSPEG 1056
            MDVD GTILPRGELIKTIVAAEPTAAADARQSENISESDDDDGPRLEYVTQLEMSCDNK LAAALSSLEVNLYSVETMALAGKVKGHTGPLTQLAFAPSDPSSFFSASEDGTVRGWDTRSLATTITLGESGEEEE+YSMALGYDGRLCATGKDCLIEFYDLRKAGKPLGSYSECHTDAVTQVRFHPHKRSFMLTGSEDGLMCFFDTEVSLEEDALDSVMNAECPVRSVGFFGPEGEGVYCCTNTETLSLWHAAGAQRIKDFGDVRA+ARGEN ADADVGAG G   XXXXXXXXXXXXXXXXXXXXX  GEDWGVAVDCIVDCQYDAAADRLRLVTSSYAGGACLATVS EG
Sbjct:    1 MDVDTGTILPRGELIKTIVAAEPTAAADARQSENISESDDDDGPRLEYVTQLEMSCDNKQLAAALSSLEVNLYSVETMALAGKVKGHTGPLTQLAFAPSDPSSFFSASEDGTVRGWDTRSLATTITLGESGEEEEIYSMALGYDGRLCATGKDCLIEFYDLRKAGKPLGSYSECHTDAVTQVRFHPHKRSFMLTGSEDGLMCFFDTEVSLEEDALDSVMNAECPVRSVGFFGPEGEGVYCCTNTETLSLWHAAGAQRIKDFGDVRALARGENLADADVGAGDGATAXXXXXXXXXXXXXXXXXXXXXX-GEDWGVAVDCIVDCQYDAAADRLRLVTSSYAGGACLATVSAEG 351          
BLAST of mRNA_Ecto-sp8_S_contig9555.31173.1 vs. uniprot
Match: A0A7S3YAZ1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAZ1_HETAK)

HSP 1 Score: 202 bits (515), Expect = 2.210e-59
Identity = 124/339 (36.58%), Postives = 172/339 (50.74%), Query Frame = 1
Query:   40 LIKTIVAAEPTAAADARQSENISESDDDDGPRLEYVTQLEMSCDNKHLAAALSSLEVNLYSVETMALAGKVKGHTGPLTQLAFAPSDPSSFFSASEDGTVRGWDTRSLATTITLGESGEEEEVYSMALGYDGRLCATGKDCLIEFYDLRKAGKPLGSYSECHTDAVTQVRFHPHKRSFMLTGSEDGLMCFFDTEVSLEEDALDSVMNAECPVRSVGFFGPEGEGVYCCTNTETLSLWHAAGAQRIKDFGDVRAMARGENPADADVGAGRGXXXXXXXXXXXXXXXXXXXXXXXXAAGEDWGVAVDCIVDCQYDAAADRLRLVTSSYAGGACLATVSPEG 1056
            L KT+V      A    Q +   E D        YV +  ++ +   +AA+ S   + LYS   M   G+++ H+  +T+++F+   P+  +SAS D T++GWDTR+L++ +T   S    EV+ +ALGYD  L A G    ++F+D+R + + LG Y+E H+DAVTQV F P K   + TGSEDGL+C +DT V  E+DAL +VMN +C +R +GFFG    G+YC T TE LSLWH   AQ+I D GD R                                          A G   G  +D +VDC YD AAD L L     AG      V PEG
Sbjct:    6 LSKTVVTTFDKPAPADTQDDETMEFDS------HYVFECILNKNQDLIAASASDNTIKLYSYPDMDAVGQMEAHSDTITRVSFSQHRPTELYSASHDCTIKGWDTRTLSSGLTFSTS---YEVHDIALGYDDNLIAAGMPERVQFFDVRSS-RQLGEYTESHSDAVTQVAFCPDKPGLLATGSEDGLVCVYDTGVPCEDDALVAVMNPDCALRRLGFFGAGSPGLYCLTGTEGLSLWHWGTAQQIADAGDARG-----------------------------------------AVGAAGGPRLDYLVDCAYDRAADELSLWAGDNAGALHRLVVGPEG 293          
BLAST of mRNA_Ecto-sp8_S_contig9555.31173.1 vs. uniprot
Match: D7G3A5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3A5_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 2.650e-51
Identity = 124/162 (76.54%), Postives = 133/162 (82.10%), Query Frame = 1
Query:  574 MLTGSEDGLMCFFDTEVSLEEDALDSVMNAECPVRSVGFFGPEGEGVYCCTNTETLSLWHAAGAQRIKDFGDV-RAMARGENPADADVGAGRGXXXXXXXXXXXXXXXXXXXXXXXXAAGEDWGVAVDCIVDCQYDAAADRLRLVTSSYAGGACLATVSPEG 1056
            MLTGSEDGL+            ALDSVMNAE PVRSVGFFG E EGV+CCTNT+TLS W+AAGAQR+KDFGDV RA+A GE PADAD G    XXXXXXXXXXXXXXXXXXXXXXXX AG+DWG AVD +VDCQYDA ADRLRLVTSS +GGACLATVSPEG
Sbjct:    1 MLTGSEDGLV-----------HALDSVMNAEFPVRSVGFFGLEEEGVHCCTNTDTLSFWYAAGAQRVKDFGDVVRALASGELPADADGGVXX-XXXXXXXXXXXXXXXXXXXXXXXXVAGDDWGFAVDYLVDCQYDATADRLRLVTSSDSGGACLATVSPEG 150          
BLAST of mRNA_Ecto-sp8_S_contig9555.31173.1 vs. uniprot
Match: A0A225WZ64_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZ64_9STRA)

HSP 1 Score: 182 bits (462), Expect = 8.660e-51
Identity = 102/248 (41.13%), Postives = 147/248 (59.27%), Query Frame = 1
Query:   70 TAAADARQSENIS----ESDDDDGPRLEYVTQLEMSCDNKHLAAALSSLEVNLYSVETMALAGKVKGHTGPLTQLAFAPSDPSSFFSASEDGTVRGWDTRSL--ATTITLGESGEEEEVYSMALGYDGRLCATGKDCLIEFYDLRKAGKPLGSYSECHTDAVTQVRFHPHKRSFMLTGSEDGLMCFFDTEVSLEEDALDSVMNAECPVRSVGFFGPEGEGVYCCTNTETLSLWHAAGAQRIKDFGDVR 795
            TA A   Q E+ S     +DD D    +Y+   + +  N  LA ALS+ +V L SVET+ L  +   H   + ++  +PS P    + S D  V+ WDTR+   A  + +G      EV+S+A+G    L ATG D L  FYD+R  GK LG Y E H DA+T+VRFHP +++F++T SEDG++CFFD  +  E+DAL+S++N E  V  VGFFGP+ E ++C T TETL LW+   A+R+  +  +R
Sbjct:   13 TAVASFPQQEDTSLVANPTDDFD---YDYILDCQPTAHNSGLALALSTCKVQLRSVETLGLLHEFHAHNSTINEVWTSPSSPYQLATCSSDECVKLWDTRAALPAMVVPVGR-----EVWSLAIGCGETLLATGTDELALFYDVR-TGKQLGQYGESHVDAITKVRFHPTQQAFIVTASEDGVVCFFDCRIPDEDDALESILNVESAVSRVGFFGPQNENIFCLTGTETLDLWNIWTAERLHHYNTIR 251          
BLAST of mRNA_Ecto-sp8_S_contig9555.31173.1 vs. uniprot
Match: G4Z594_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4Z594_PHYSP)

HSP 1 Score: 175 bits (443), Expect = 9.480e-48
Identity = 97/259 (37.45%), Postives = 147/259 (56.76%), Query Frame = 1
Query:   25 LPRGELIKTIVAAEPTAAADARQSENISESDDDDGPRLEYVTQLEMSCDNKHLAAALSSLEVNLYSVETMALAGKVKGHTGPLTQLAFAPSDPSSFFSASEDGTVRGWDTRSL--ATTITLGESGEEEEVYSMALGYDGRLCATGKDCLIEFYDLRKAGKPLGSYSECHTDAVTQVRFHPHKRSFMLTGSEDGLMCFFDTEVSLEEDALDSVMNAECPVRSVGFFGPEGEGVYCCTNTETLSLWHAAGAQRIKDFGDVR 795
            L RG L     A    +A+ A+Q +    +D       +YV   + +     LA ALS+ ++ L S ET+AL  +   H   + ++  +PS P    + S D  V+ WDTR+   A  + +G      EV+S+++G    L A G D L  FYD+R  G  LG Y E H DA+T+VRFHP + +F++T SEDG++CFFD  +  E+DAL+S++N E  + ++GFFGP+ E ++C T TETL LW+   AQR+  +  +R
Sbjct:    5 LERGGLALAQTAVASFSASAAQQGDTALVADPAQDFDYDYVLDCQPTAQRSGLALALSTYKLQLRSRETLALVHEFHAHNSTIHEVWTSPSSPHQLATCSSDECVKLWDTRAALPAMVVPVGR-----EVWSLSVGCGETLLAAGTDELALFYDVR-TGAQLGQYGESHVDAITKVRFHPTQPAFVVTASEDGVVCFFDCRIPDEDDALESILNVESAITNIGFFGPQKENIFCLTGTETLDLWNLWTAQRLHHYATIR 257          
BLAST of mRNA_Ecto-sp8_S_contig9555.31173.1 vs. uniprot
Match: A0A0W8D6X8_PHYNI (Replication factor C subunit 2 n=14 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D6X8_PHYNI)

HSP 1 Score: 174 bits (442), Expect = 1.100e-47
Identity = 88/219 (40.18%), Postives = 133/219 (60.73%), Query Frame = 1
Query:  139 EYVTQLEMSCDNKHLAAALSSLEVNLYSVETMALAGKVKGHTGPLTQLAFAPSDPSSFFSASEDGTVRGWDTRSLATTITLGESGEEEEVYSMALGYDGRLCATGKDCLIEFYDLRKAGKPLGSYSECHTDAVTQVRFHPHKRSFMLTGSEDGLMCFFDTEVSLEEDALDSVMNAECPVRSVGFFGPEGEGVYCCTNTETLSLWHAAGAQRIKDFGDVR 795
            +YV   + + +   LA ALS+ ++ L S+ET+ L  +   H   + ++  +PS P    + S D  V+ WDTR+    + L       EV+S+++G    L ATG D L  FYD+R  G  LG Y E H DA+T+VRFHP + +F++T SEDG++CFFD  +  E+DAL+S++N E  V +VGFFGP+ E ++C T TETL LW+   A+R+  +  +R
Sbjct:   39 DYVLDCQPTANKSGLALALSNCKIQLRSLETLGLMHEFHAHNSTINEVWTSPSSPFQLATCSSDECVKLWDTRTALPAMVLPVG---REVWSLSIGCGETLLATGTDELALFYDVR-TGNKLGQYGESHVDAITKVRFHPTQPAFVVTASEDGVVCFFDCRIPDEDDALESIINVESAVTTVGFFGPQKENIFCLTGTETLDLWNLWTAERLHHYDTIR 253          
BLAST of mRNA_Ecto-sp8_S_contig9555.31173.1 vs. uniprot
Match: A0A484EBF9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EBF9_BRELC)

HSP 1 Score: 172 bits (435), Expect = 9.090e-47
Identity = 106/341 (31.09%), Postives = 169/341 (49.56%), Query Frame = 1
Query:   40 LIKTIVAAEPTAAADARQSENISESDDDDGPRLEYVTQLEMSCDNKHLAAALSSLEVNLYSVETMALAGKVKGHTGPLTQLAFAPSDPSSFFSASEDGTVRGWDTRSL--ATTITLGESGEEEEVYSMALGYDGRLCATGKDCLIEFYDLRKAGKPLGSYSECHTDAVTQVRFHPHKRSFMLTGSEDGLMCFFDTEVSLEEDALDSVMNAECPVRSVGFFGPEGEGVYCCTNTETLSLWHAAGAQRIKDFGDVRAMARGENPADADVGAGRGXXXXXXXXXXXXXXXXXXXXXXXXAAGEDWGVAVDCIVDCQYDAAADRLRLVTSSYAGGACLATVSPEG 1056
            L +T V A  +    AR+   I+E  D D     Y+   + +     LA ALS+ ++ L ++ET++L  + + H+  + ++  +PS P    + S D  V+ WDTR+   A  + +G      EV+S+++G    L ATG D L  FYD+R  G  L  Y E H DA+T+VRFHP +++F++T SEDG++CFFD  +  +ED ++S+ N E  V +VGFFGPE E ++C T +ETL LW+   A+R+  +  +R                                               +G   D ++DC YD  +  L L+  ++ G     T+S +G
Sbjct:    6 LEQTAVVAFASPGDIARELTKINEDSDYD-----YILDCQPTAQKSGLALALSNGKMQLRNLETLSLLHEFQAHSSAINEVYTSPSSPFQLATCSSDHCVKLWDTRTALPAMVVPVGR-----EVWSLSIGCGETLLATGTDELALFYDVR-TGTLLNQYGESHVDAITKVRFHPMQQNFVVTASEDGVVCFFDCRIPEKEDTIESIFNVESAVTTVGFFGPERENIFCLTGSETLDLWNIWTAERLHHYDTIRDDCN------------------------------------------KYGFKTDYLIDCVYDDQSSELFLLAGNHEGNMNAVTISKDG 293          
BLAST of mRNA_Ecto-sp8_S_contig9555.31173.1 vs. uniprot
Match: H3GVV6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GVV6_PHYRM)

HSP 1 Score: 171 bits (434), Expect = 1.610e-46
Identity = 103/308 (33.44%), Postives = 155/308 (50.32%), Query Frame = 1
Query:  139 EYVTQLEMSCDNKHLAAALSSLEVNLYSVETMALAGKVKGHTGPLTQLAFAPSDPSSFFSASEDGTVRGWDTRSL--ATTITLGESGEEEEVYSMALGYDGRLCATGKDCLIEFYDLRKAGKPLGSYSECHTDAVTQVRFHPHKRSFMLTGSEDGLMCFFDTEVSLEEDALDSVMNAECPVRSVGFFGPEGEGVYCCTNTETLSLWHAAGAQRIKDFGDVRAMARGENPADADVGAGRGXXXXXXXXXXXXXXXXXXXXXXXXAAGEDWGVAVDCIVDCQYDAAADRLRLVTSSYAGGACLATVSPEG 1056
            +YV   + +     LA ALS+  V L S ET+AL  +   H   + ++  + S P    + S D  V+ WDTR+   A  + +G      EV+S+++G    L A G D L  FYD+R   K LG Y + H DA+T+VRFHP ++SF++T SEDG++C FD  +  E+DAL+S++N E  V +VGFFGP+ E ++C T TETL LW+   A+R+  +  +R     +N                                         G+A D ++DC YD  AD L L+  ++ G     T+  +G
Sbjct:   41 DYVLDCQPTAHGSGLALALSTRTVQLRSRETLALVHEFHAHNSTIHEIWTSASSPHQLATCSSDECVKLWDTRAALPALVVPVGR-----EVWSLSIGCGETLLAAGTDELALFYDVRTGAK-LGQYGDSHVDAITKVRFHPTQQSFVVTASEDGVVCVFDCRIPDEDDALESILNVESAVSTVGFFGPQKENIFCLTGTETLDLWNLWTAERLHHYATIRDDCN-QN-----------------------------------------GLATDYLIDCVYDDQADELFLLAGNHDGDMNAVTIGTDG 300          
BLAST of mRNA_Ecto-sp8_S_contig9555.31173.1 vs. uniprot
Match: A0A3R7H5D5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H5D5_9STRA)

HSP 1 Score: 170 bits (431), Expect = 5.340e-46
Identity = 86/221 (38.91%), Postives = 134/221 (60.63%), Query Frame = 1
Query:  139 EYVTQLEMSCDNKHLAAALSSLEVNLYSVETMALAGKVKGHTGPLTQLAFAPSDPSSFFSASEDGTVRGWDTRSL--ATTITLGESGEEEEVYSMALGYDGRLCATGKDCLIEFYDLRKAGKPLGSYSECHTDAVTQVRFHPHKRSFMLTGSEDGLMCFFDTEVSLEEDALDSVMNAECPVRSVGFFGPEGEGVYCCTNTETLSLWHAAGAQRIKDFGDVR 795
            +Y+   + +     LA ALS+ +V L S++T+ L  +   H   + ++  +PS P    + S D  V+ WDTR+   A  + +G      EV+S+++G    L ATG + L  FYD+R  G  LG Y E H DA+T+VRFHP + +F++T SEDG++CFFD  +  E+DAL+S++N E  V ++GFFGP+ E ++C T TETL LW+   A+R+  +  +R
Sbjct:   41 DYILDCQPTAHKSGLALALSNRKVQLRSLDTLGLVHEFHAHNSTINEVWTSPSSPYQLATCSSDECVKLWDTRAALPAMVVPVGR-----EVWSLSIGCGETLLATGTNELAMFYDVR-TGNKLGEYGESHIDAITKVRFHPTQPAFVVTASEDGVVCFFDCRIPDEDDALESILNVESAVTTIGFFGPQKENIFCLTGTETLDLWNLWTAERLHHYATIR 255          
BLAST of mRNA_Ecto-sp8_S_contig9555.31173.1 vs. uniprot
Match: A0A8J5IR07_9STRA (Protein kinase domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IR07_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.010e-45
Identity = 90/221 (40.72%), Postives = 135/221 (61.09%), Query Frame = 1
Query:  139 EYVTQLEMSCDNKHLAAALSSLEVNLYSVETMALAGKVKGHTGPLTQLAFAPSDPSSFFSASEDGTVRGWDTRSL--ATTITLGESGEEEEVYSMALGYDGRLCATGKDCLIEFYDLRKAGKPLGSYSECHTDAVTQVRFHPHKRSFMLTGSEDGLMCFFDTEVSLEEDALDSVMNAECPVRSVGFFGPEGEGVYCCTNTETLSLWHAAGAQRIKDFGDVR 795
            EYV   + + +   LA ALS+ ++ L S+ET+ L  +   H   +  +  +PS P    + S D  V+ WDTR+   A  + +G      EV+S+++G    L ATG D L +FYD+R  G  LG Y E H DA+T+VRFHP + +F++T SEDG++CFFD  +  E+DAL+S++N E  V +VGFFGP+ E ++C T TETL LW+   A+R+  +  +R
Sbjct:   39 EYVLACQPTANKSGLALALSNCKIQLRSLETLGLLHEFHAHNSTINDVWTSPSSPFQLATCSSDECVKLWDTRAALPAMVVPVGR-----EVWSLSIGCGETLLATGTDELAQFYDVR-TGNKLGQYGESHVDAITKVRFHPTQPAFVVTASEDGVVCFFDCRIPDEDDALESILNVESAVTNVGFFGPQQENIFCLTGTETLDLWNLWTAERLHHYDTIR 253          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9555.31173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFC8_ECTSI1.510e-22496.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3YAZ1_HETAK2.210e-5936.58Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7G3A5_ECTSI2.650e-5176.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A225WZ64_9STRA8.660e-5141.13Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
G4Z594_PHYSP9.480e-4837.45Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A0W8D6X8_PHYNI1.100e-4740.18Replication factor C subunit 2 n=14 Tax=Phytophtho... [more]
A0A484EBF9_BRELC9.090e-4731.09Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
H3GVV6_PHYRM1.610e-4633.44Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A3R7H5D5_9STRA5.340e-4638.91Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A8J5IR07_9STRA1.010e-4540.72Protein kinase domain-containing protein n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9555contigEcto-sp8_S_contig9555:3585..7155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score629.0
Seed ortholog evalue1.3e-177
Seed eggNOG ortholog2880.D8LFC8
Preferred nameWDR89
Model size1056
KEGG koko:K14026
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0008150,GO:0010029,GO:0032991,GO:0040008,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048580,GO:0050789,GO:0050793,GO:0051239,GO:0065007,GO:1900140,GO:2000026
Exons6
EggNOG free text desc.WD40 repeats
EggNOG OGsKOG1188@1,KOG1188@2759
Cds size1056
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9555.31173.1prot_Ecto-sp8_S_contig9555.31173.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9555 3585..7155 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145316.681957-CDS-Ecto-sp8_S_contig9555:3584..39251681145316.681957-CDS-Ecto-sp8_S_contig9555:3584..3925Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9555 3585..3925 +
1681145316.7023325-CDS-Ecto-sp8_S_contig9555:4332..44111681145316.7023325-CDS-Ecto-sp8_S_contig9555:4332..4411Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9555 4333..4411 +
1681145316.7178285-CDS-Ecto-sp8_S_contig9555:5007..51301681145316.7178285-CDS-Ecto-sp8_S_contig9555:5007..5130Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9555 5008..5130 +
1681145316.7282083-CDS-Ecto-sp8_S_contig9555:5510..56061681145316.7282083-CDS-Ecto-sp8_S_contig9555:5510..5606Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9555 5511..5606 +
1681145316.7384002-CDS-Ecto-sp8_S_contig9555:5956..62891681145316.7384002-CDS-Ecto-sp8_S_contig9555:5956..6289Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9555 5957..6289 +
1681145316.7493858-CDS-Ecto-sp8_S_contig9555:7071..71551681145316.7493858-CDS-Ecto-sp8_S_contig9555:7071..7155Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9555 7072..7155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9555.31173.1

>prot_Ecto-sp8_S_contig9555.31173.1 ID=prot_Ecto-sp8_S_contig9555.31173.1|Name=mRNA_Ecto-sp8_S_contig9555.31173.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=352bp
MDVDAGTILPRGELIKTIVAAEPTAAADARQSENISESDDDDGPRLEYVT
QLEMSCDNKHLAAALSSLEVNLYSVETMALAGKVKGHTGPLTQLAFAPSD
PSSFFSASEDGTVRGWDTRSLATTITLGESGEEEEVYSMALGYDGRLCAT
GKDCLIEFYDLRKAGKPLGSYSECHTDAVTQVRFHPHKRSFMLTGSEDGL
MCFFDTEVSLEEDALDSVMNAECPVRSVGFFGPEGEGVYCCTNTETLSLW
HAAGAQRIKDFGDVRAMARGENPADADVGAGRGATAAAAPREGGGVAATA
RAAAAEAAAGEDWGVAVDCIVDCQYDAAADRLRLVTSSYAGGACLATVSP
EG
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mRNA from alignment at Ecto-sp8_S_contig9555:3585..7155+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9555.31173.1 ID=mRNA_Ecto-sp8_S_contig9555.31173.1|Name=mRNA_Ecto-sp8_S_contig9555.31173.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3571bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9555:3585..7155+ (Ectocarpus species8 EcLAC_412)
ATGGATGTCGACGCTGGTACGATTCTCCCTCGGGGTGAGCTCATCAAGAC CATTGTCGCCGCCGAGCCCACTGCAGCAGCAGACGCGCGGCAGAGCGAGA ATATCAGCGAAAGCGACGACGACGATGGGCCGAGGCTCGAATACGTAACA CAGCTGGAGATGAGCTGCGACAACAAGCATCTAGCGGCAGCGCTTTCGTC CCTTGAGGTTAACCTCTATTCGGTGGAAACGATGGCCCTAGCAGGGAAGG TGAAGGGCCACACGGGCCCCCTTACGCAGCTGGCGTTCGCTCCATCCGAC CCGAGCTCCTTTTTCTCGGCATCGGAGGACGGGACTGTCAGGTTTGCAGT GTGTGGCAGCAGCGGAATTTCCTTTCCGAGAGTCCGAGCTGCCCACCCCA CACAGCTGGGCGGTTGCATAACTCACACTTTGCAGTCTCTTGGTCTTTGC CGGGCGTGTTTAGAGGGGTTGGTACTGCATAAGTTCGTGCCATTTTGGTG TTACTAGTAGGCAATGCAATTGTATGGTACCCGGGAGTGCCGCTGGTGTG CTACAACCTACTTGTCACAGGTACACAGCCTGTGCAATGTGTGCAATGAA GGCCCTTTCGCAAGGGAACTTCAGCTGTTGTACATGTACTTCATATGTAA AATTGGTCAATCGGTTGTCGCGTGTATGAGATTACGACTTAATTACAACT CGCAACCAGTGTCCTGTGCTAATTTGGTTTACATATGTTGTCTTGCAGGG GATGGGACACTCGATCGCTCGCGACGACAATCACCCTGGGGGAGTCGGGA GAGGAAGAGGAGGTCTACAGCATGGCGGTGAGACCTCGCGCACAAGTACC GAGAACGGCCAAACAGCAGCAGTGGGTCCCATCTCAGTTCCAACCCCAAT CTTGCTCCTACGAAACTGGGGTTGGGTTCGGCGACGGAGATGGCAAGCAG AATGTAGAGAGACGATGTCGTTGATTTCGATTGCCACGTGCCGGAGAGAG TTCCCTTGCCTTATAGGTGAATGTTGTCGGCAACACGTTGCGTCAACCGC GGTAGCCGGCTGAAAAACGGGAGAGGAAGACGCAAATTCAACCAGTTTCT CAGCGGGGCACAACACTATATCTGTAGGCTGCACCCTGCTACAGACCGGT GCGAGGGCAGAGTGCTATCCCTCGGGCGGCGGTGTCACGGCACGCCAGTT AGCAGTACAGACTCAACATTTCTTGCGGTTCTTGCTGTATTTTTATTCGG TTCGTGTACTCACCGGTACGGTACACGGTCATTATTGCTCCACCATACCG ACCGCCCTTGCGTGCTACCATCCAAAAGTCTAGCTGGTTGTTCTTTCGGG TTCCTTCTCCATTTTCACCGTTCGCTTTTGCTTCCTTCCCGCTCGCTGTC GGACATAAACATTGTCCCACCAGCTGGGATACGACGGTCGATTGTGCGCC ACTGGCAAAGACTGTTTGATCGAGTTCTACGACTTGCGGAAGGCAGGGAA GCCACTCGGGTCGTACTCGGAGTGCCACACAGACGCAGTAACTCAGGTAA TAACACATTGACGATTTTTTCTCAGTTTTCCTTGCCGGGGAATTTAGAAG AAGACAATGTTTCGGTCATGACGCACGCCTGCTCGGGCTACGGTGGTGTC AAAGCGTGCTGGGTCGCATCTTGCACTTGATACACAAGAACACCATGGTG CGTGTTGGCAGGCCACCTTGTCCTTCACCGCGGACAATACATTTTTTCGC CCGTTGATACTGCTGTAAGGGTTTGAGAGCGCTTGGTGGCGAGGCAGGAC CGATTGCTCGCGCGAAGATGACGGCAAAGACTATGACCACACATCATTTA ACGAAAGGGGATCTCCGCGACATGACGTGCGTTCTCTCGTATTGGCTGCC TGTCGTGTTGCCGTCACCGCGTCCAGGTCCGGTTCCACCCTCACAAGCGC TCCTTCATGCTCACCGGCTCTGAGGACGGGCTCATGTGCTTCTTCGACAC CGAGGTCTCGCTCGAAGAGGATGTGAGCACCTTTCTCCGGCGTATGAAAG AAGGAGGTTTTATTTTTTCGCTTTAGTTGTCGGCCAACGCCAGGCGAAGC ACCGACGCCATGCTAGGCGCCCACGCCGACTAGAAACCACGATGCAGGCG AGCGCACTGCCCCAGCTGTTGCCGATTTTCTTTGGACCCCAACCAAACTG TACCACCAAGATCATCCTTGACAGTTTCGTCAGGCTTCCTCCCGGAGACT CAGCCACCGTCAAGATATGATATTCCCCACTGCGGCAGCAGATCCCCCGT CCTAAGTCTCCAACACTGAGAGGGAGCTTCTGGGTCCCGTCTGTTAACCT TCTCTCGTTGCGGTGCTTGCAGGCGCTCGACTCGGTCATGAACGCGGAGT GCCCCGTGCGCAGCGTGGGTTTCTTCGGCCCGGAGGGAGAGGGGGTATAC TGCTGCACCAACACGGAGACCCTGTCTCTCTGGCACGCCGCAGGAGCGCA GAGGATAAAGGACTTCGGCGACGTCCGTGCGATGGCGAGGGGAGAAAATC CTGCTGACGCCGACGTTGGTGCTGGCCGCGGTGCTACTGCTGCTGCTGCT CCCCGGGAGGGCGGAGGGGTAGCAGCGACAGCACGGGCTGCGGCGGCGGA GGCGGCGGCGGGCGAGGATTGGGGTGTTGCGGTGGACTGCATAGTGGACT GCCAGGTGAAAAAATGTGCACCGATTTTTTGTGGAAGGGTAAAAGCGCAT TCTGCCGAGTGAATTCGCGGCAGGTGTGTGATTGTGGCCACCTGTTTCAT CCAGGAGCCTGGTACACCTGTGGAGGCCTGCGGGCCATGCTAATCGTCGG TACTCTTGCCTCTGTAGTGCTCGTGGCGGTGGCTCAGATTTTTGCCAACC TGTGCTGGAACAACACAGCATATATGTCGTGTTGTTAGTTGGCTATTTTC TGTTCAGTACCGTCCACCATCAGTGCCGGTCCAACTGGAGCGGACGCCTT CCGTGGTCGCAGGCCAACTATATGACCAACAATTGGTGCACATATCTAAA CAATGACAACTACGTCGGGGAAATAGCGAAATATCAAGGTGATGTTTTGT GACGTTTTCTTGGCAGATGGCTGCTGCCGCCAAGTGCACGACTGCTCTGT GGCTTGTGTTGAGAGGAATTGTTTTTTGGAATTGTGACGGCCACGTGACA CGGTGTTGTTTTTGGCGTTTTCTTATCAGATGGCTGCCGCCGCAACGTTT TCGACATGCAAAGCTTCGACATGCATTCCGAGGGACTATATCACAGCGGC GGTATAGATGAAAGCGCTAGCCCGCTAGCATTGACAGTCGTCAGTTTCCA GTTCTTGTGGACGCTTTTTTTTTTGCGCGTGCGACAGACCGCATGCTTTA CCCGCTGCTGAAGATAAGACAATACCGTTCCTTGGCCCCCACTGTTCGCA TTCGCATTGCATGTGTCTTCCTTCGTGATGTTTTCAGTACGACGCAGCAG CTGATCGTCTGCGGCTAGTGACGAGCAGTTACGCAGGCGGAGCGTGCCTG GCGACTGTGTCTCCAGAAGGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9555:3585..7155+

>mRNA_Ecto-sp8_S_contig9555.31173.1 ID=mRNA_Ecto-sp8_S_contig9555.31173.1|Name=mRNA_Ecto-sp8_S_contig9555.31173.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1056bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9555:3585..7155+ (Ectocarpus species8 EcLAC_412)
ATGGATGTCGACGCTGGTACGATTCTCCCTCGGGGTGAGCTCATCAAGAC
CATTGTCGCCGCCGAGCCCACTGCAGCAGCAGACGCGCGGCAGAGCGAGA
ATATCAGCGAAAGCGACGACGACGATGGGCCGAGGCTCGAATACGTAACA
CAGCTGGAGATGAGCTGCGACAACAAGCATCTAGCGGCAGCGCTTTCGTC
CCTTGAGGTTAACCTCTATTCGGTGGAAACGATGGCCCTAGCAGGGAAGG
TGAAGGGCCACACGGGCCCCCTTACGCAGCTGGCGTTCGCTCCATCCGAC
CCGAGCTCCTTTTTCTCGGCATCGGAGGACGGGACTGTCAGGGGATGGGA
CACTCGATCGCTCGCGACGACAATCACCCTGGGGGAGTCGGGAGAGGAAG
AGGAGGTCTACAGCATGGCGCTGGGATACGACGGTCGATTGTGCGCCACT
GGCAAAGACTGTTTGATCGAGTTCTACGACTTGCGGAAGGCAGGGAAGCC
ACTCGGGTCGTACTCGGAGTGCCACACAGACGCAGTAACTCAGGTCCGGT
TCCACCCTCACAAGCGCTCCTTCATGCTCACCGGCTCTGAGGACGGGCTC
ATGTGCTTCTTCGACACCGAGGTCTCGCTCGAAGAGGATGCGCTCGACTC
GGTCATGAACGCGGAGTGCCCCGTGCGCAGCGTGGGTTTCTTCGGCCCGG
AGGGAGAGGGGGTATACTGCTGCACCAACACGGAGACCCTGTCTCTCTGG
CACGCCGCAGGAGCGCAGAGGATAAAGGACTTCGGCGACGTCCGTGCGAT
GGCGAGGGGAGAAAATCCTGCTGACGCCGACGTTGGTGCTGGCCGCGGTG
CTACTGCTGCTGCTGCTCCCCGGGAGGGCGGAGGGGTAGCAGCGACAGCA
CGGGCTGCGGCGGCGGAGGCGGCGGCGGGCGAGGATTGGGGTGTTGCGGT
GGACTGCATAGTGGACTGCCAGTACGACGCAGCAGCTGATCGTCTGCGGC
TAGTGACGAGCAGTTACGCAGGCGGAGCGTGCCTGGCGACTGTGTCTCCA
GAAGGT
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