mRNA_Ecto-sp8_S_contig9554.31172.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9554.31172.1
Unique NamemRNA_Ecto-sp8_S_contig9554.31172.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9554.31172.1 vs. uniprot
Match: D7G2I3_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I3_ECTSI)

HSP 1 Score: 436 bits (1121), Expect = 6.690e-154
Identity = 233/238 (97.90%), Postives = 233/238 (97.90%), Query Frame = 1 
Query:    1 MSLHRSSARVGDSKSGKGGXXXSSVVVGKDSSRHLWGIPNVVYTFTHGFMMEMLQLKMLKSQTNLLKTSIQKLKDRLETQKRHEQFKNQTIDKSQKQKAGTLSVMKYKVTMSQAATNARESTRRRKNSVTSRAMQRVKRPVQQKWTEALDWKKRSCLLTGESLSLFSDPKDTEPSQIVYLKGATAEPELGQAFKDSAFRVETNKWKKGDEVVDGTERRTFTFLAESKDDKELWLYQIR 714
            MSLHRSSA VGD KSGKG XXX  VVVGKDSSRHLWGIPNVVYTFTHGFMMEMLQLKMLKSQTNLLKTSIQKLKDRLETQKRHEQFKNQTIDKSQKQKAGTLSVMKYKVTMSQAATNARESTRRRKNSVTSRAMQRVKRPVQQKWTEALDWKKRSCLLTGESLSLFSDPKDTEPSQIVYLKGATAEPELGQAFKDSAFRVETNKWKKGDEVVDGTERRTFTFLAESKDDKELWLYQIR
Sbjct:    1 MSLHRSSATVGDDKSGKGXXXXXXVVVGKDSSRHLWGIPNVVYTFTHGFMMEMLQLKMLKSQTNLLKTSIQKLKDRLETQKRHEQFKNQTIDKSQKQKAGTLSVMKYKVTMSQAATNARESTRRRKNSVTSRAMQRVKRPVQQKWTEALDWKKRSCLLTGESLSLFSDPKDTEPSQIVYLKGATAEPELGQAFKDSAFRVETNKWKKGDEVVDGTERRTFTFLAESKDDKELWLYQIR 238
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BLAST of mRNA_Ecto-sp8_S_contig9554.31172.1 vs. uniprot
Match: A0A6H5JJ45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ45_9PHAE)

HSP 1 Score: 416 bits (1068), Expect = 1.080e-138
Identity = 219/238 (92.02%), Postives = 230/238 (96.64%), Query Frame = 1 
Query:    1 MSLHRSSARVGDSKSGKGGXXXSSVVVGKDSSRHLWGIPNVVYTFTHGFMMEMLQLKMLKSQTNLLKTSIQKLKDRLETQKRHEQFKNQTIDKSQKQKAGTLSVMKYKVTMSQAATNARESTRRRKNSVTSRAMQRVKRPVQQKWTEALDWKKRSCLLTGESLSLFSDPKDTEPSQIVYLKGATAEPELGQAFKDSAFRVETNKWKKGDEVVDGTERRTFTFLAESKDDKELWLYQIR 714
            MSL RSS RVGD KSGKGGXXXSSVVVGKDSSRHLWGIPNVVYTFTHGFM EMLQLKMLKSQTNLLKTSIQKLKDRLETQKRHE+FKN+TIDKS K K GTLSVMK+KVTMSQAATNARESTRRRKNSVTSRAM++VKRPVQQKWTEA+DWKKRSC+LTGESLSLFSDPKDTEPSQIVYL GATAEPELGQAFK+SAFRVETNKWKKGD++VDGTERRTFTFLAESKDD+ELWLYQIR
Sbjct:  303 MSLDRSSGRVGDGKSGKGGXXXSSVVVGKDSSRHLWGIPNVVYTFTHGFMREMLQLKMLKSQTNLLKTSIQKLKDRLETQKRHEEFKNETIDKSHKHKEGTLSVMKHKVTMSQAATNARESTRRRKNSVTSRAMRKVKRPVQQKWTEAVDWKKRSCILTGESLSLFSDPKDTEPSQIVYLTGATAEPELGQAFKESAFRVETNKWKKGDDLVDGTERRTFTFLAESKDDRELWLYQIR 540
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9554.31172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2I3_ECTSI6.690e-15497.90PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JJ45_9PHAE1.080e-13892.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9554contigEcto-sp8_S_contig9554:2006..4835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size714
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-12_001630.1
Cds size714
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145316.5835662-CDS-Ecto-sp8_S_contig9554:2005..21361681145316.5835662-CDS-Ecto-sp8_S_contig9554:2005..2136Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9554 2006..2136 +
1681145316.599227-CDS-Ecto-sp8_S_contig9554:2394..25241681145316.599227-CDS-Ecto-sp8_S_contig9554:2394..2524Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9554 2395..2524 +
1681145316.6113634-CDS-Ecto-sp8_S_contig9554:2894..29721681145316.6113634-CDS-Ecto-sp8_S_contig9554:2894..2972Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9554 2895..2972 +
1681145316.622668-CDS-Ecto-sp8_S_contig9554:3502..37361681145316.622668-CDS-Ecto-sp8_S_contig9554:3502..3736Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9554 3503..3736 +
1681145316.6337643-CDS-Ecto-sp8_S_contig9554:4694..48351681145316.6337643-CDS-Ecto-sp8_S_contig9554:4694..4835Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9554 4695..4835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9554.31172.1prot_Ecto-sp8_S_contig9554.31172.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9554 2006..4835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9554.31172.1

>prot_Ecto-sp8_S_contig9554.31172.1 ID=prot_Ecto-sp8_S_contig9554.31172.1|Name=mRNA_Ecto-sp8_S_contig9554.31172.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=238bp
MSLHRSSARVGDSKSGKGGGGGSSVVVGKDSSRHLWGIPNVVYTFTHGFM
MEMLQLKMLKSQTNLLKTSIQKLKDRLETQKRHEQFKNQTIDKSQKQKAG
TLSVMKYKVTMSQAATNARESTRRRKNSVTSRAMQRVKRPVQQKWTEALD
WKKRSCLLTGESLSLFSDPKDTEPSQIVYLKGATAEPELGQAFKDSAFRV
ETNKWKKGDEVVDGTERRTFTFLAESKDDKELWLYQIR
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mRNA from alignment at Ecto-sp8_S_contig9554:2006..4835+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9554.31172.1 ID=mRNA_Ecto-sp8_S_contig9554.31172.1|Name=mRNA_Ecto-sp8_S_contig9554.31172.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2830bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9554:2006..4835+ (Ectocarpus species8 EcLAC_412)
ATGTCCCTCCACAGATCGTCGGCGAGGGTCGGTGACAGCAAGAGCGGCAA
GGGCGGCGGCGGCGGATCGTCGGTGGTGGTGGGAAAGGACTCCTCCCGAC
ACCTGTGGGGGATCCCTAACGTCGTGTACACGTGAGCCGTCGCAGCGCAG
CAAATGCTCGATTTCCTCCTCCGAAAAAATACGTCGAAAATCTTACAAGT
CTTTGCCGAAAATTAAATCCGAAATTTGCAAATTTGGCCTCTTTTATTTT
TTATTTTTTTGGAAATAAGTTCGAAATTGAGTTTGAGTTACTGCAGTCCA
ATTTTCGGTCAAAGAATATGGTGTCGTTTTTCGCCTGTAGACTAAAAGCA
GTACGTTTTGATTGGTTTCGTCTGTTTTTTCTTGTCCAGGTTCACGCACG
GGTTCATGATGGAGATGCTGCAGCTCAAGATGCTCAAGAGCCAGACCAAC
CTCCTCAAGACGAGTATCCAGAAGCTCAAAGACAGGCTCGAGACCCAGAA
GAGACACGAGCAATTCAAGGTTGGCCTTCCTTGTCTCCTTCCTACATAGC
GTTTAACTGCGGTAGCTGGCTGGCTGCCTCCCTGCTCGTGCATGGGGTGC
TCTGGAGGCCTTTTTGGTGAAGAGTTTCGATCGCGAGAGATACCTCCCGG
GGACAAATAGAAAAGCGAACCGGGGGGGTGTTGGACACCCATCGAGGGCA
GTTTACGACCAAGGAGTACCCGTGATACGCAAATGTCGGACATTTGGGTG
TACACTAACCCTCTGTCTTTCTCTCTCTCTCGCTCTCGTCGCTCTCGCTC
TCTCTCTCTTCTCTCTCTCTTTCTCGCTCTCGTTGCTCTCGCTCTCGCTC
TCGCTCTCTCGCTCTCCCTCCCGACGATTGGAGTAACAGAACCAGACCAT
CGACAAATCCCAAAAGCAGAAGGCCGGAACGCTGTCCGTCATGAAGTACA
AGGTCACCATGTCACAGGTGAGATTGTTTACCTTGGGTTTTATCGTCGTT
TTTTTTTTTTTTTTACTGCAGACAGGACGACAGTTTTTCGCTGTGTTTAC
TGCCGTGTGATTTTTGCCCATACATGGTTATTGTTCATGCCATCTTCGGT
TTTACGCGCAAAAACACACTCTAGCGGCATCTATCGTACGCCGTATCGGC
GGCGGTGTTGATATCGGCTTTTTGTTTTTTGCTGCGTATATATCGATGAC
GAAGATGAAACACACGAATCACACCACGTCAATGTGTCCTTGCATCTCGT
GTCGGACGCTGTTGTTGCTTGAAATTGAAAAAGAGGATGAAAACACACAA
CCACGTGCAGACTTGCTTGGCGTCAACCCATGTACCTGCTTACGAAGAAT
CAAAACAAATTAAGTACCTCAGTAATTAAACAAGTGATTAAACACACACA
CAACACATGTGCACACAAAGGCTTGCTTAGCATCAACCTCTATGTACCTG
CATAAGAAACACAAAACACATTTCAATAACACTACAAACAAAATCAGGCG
GCGACGAACGCGCGCGAGTCCACCCGGCGACGGAAGAACTCTGTGACGTC
GAGGGCAATGCAAAGGGTCAAGCGCCCCGTGCAGCAGAAGTGGACGGAGG
CTCTGGACTGGAAGAAGCGGAGCTGTCTCCTCACGGGGGAGAGCCTGTCT
CTCTTCAGCGACCCGAAGGACACGGAGCCGAGCCAGATCGTGTACCTTAA
GGGTGCCACGGCGGAGCCCGAGCTAGGACAGGTTTGTTGTTGGTGGTGTT
GTGGTTGTTGCGGTTGCGGTTGCGGTTGTTGTTGTTGGTGTTGCTGCTGT
TGTTGGTGTAGTTGAGACGGTTGATGGATGGATGGGTGGATGAAGTTATT
TGTGGCCTTTCGGAGGAACTGACGCGAACCCCAGGGCATGCATTACGTCA
GCTTTGTGGGTAGCGACCACTAATAGTCCTACGCCCCTTGCGTATACCGT
ACCGACAGCCGGTCGACCCGTAGGTGTCTCCCGTTAACGCCACGGGACGA
CGTGGCGACCCATTAACCCTCCTAGTACTGGAAGCCCAAATGGGGACACT
TTTGGGACACAGCACTCAAAGGCCTATTTACCGCACGGTGGTCACCCTAG
GCTCCGCTGTATGCAACGTACGTGAGAACCCTCGGCCTATCATGCTTGGC
TGAGGTGGTACGCTGTGTTATATGCTGTGTGATGCCTCTCCTGGGCCTCT
GGCTTGCTGTACACATCTCCCAACCCGCGTGCCCCCCAGGTCGCAAAACT
GTACATCGCCTGGTACTGGAAAAATTGCTGACTTGGCTTCAGTATGAAAA
ATGTCCCCAAAACGGACACTTTTCATACTGAAGCCAAGTCACCCTTCGTC
TGGCAAGGAGCTCAGATTCTTTGGAGGGACTGTAGCCCCTCGACCAATGG
CTGACATACATTCTTTCGGCATTTTTTTTTTGCGGAGGGACTGGGTACTA
GGAGGGTTAATGTGGCCTGGCCTTCTGTGCTTTGCCTGTTTTCCCGTATG
CTATAACCGCAACCTTACCGTGTTCGCACATACCTACACATGGTGGTTCC
GCACTTGCCTCGAAACCAAACCATTCGCCCTACATATCTCCCCCCGCCTC
AACCCTCGCCGGGTTTTCCACGCCCGCGGGTTGGAAACAAAATATGACAC
ACGCGGGTTTTTGCACGTGGGACGGGACGTATGGGACAGGCTTTCAAGGA
CTCGGCCTTCCGCGTGGAGACGAACAAGTGGAAGAAGGGCGACGAGGTGG
TGGACGGAACGGAGCGGCGGACGTTCACGTTCCTCGCCGAGAGCAAGGAC
GACAAGGAGCTGTGGCTCTACCAGATCAGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9554:2006..4835+

>mRNA_Ecto-sp8_S_contig9554.31172.1 ID=mRNA_Ecto-sp8_S_contig9554.31172.1|Name=mRNA_Ecto-sp8_S_contig9554.31172.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9554:2006..4835+ (Ectocarpus species8 EcLAC_412)
ATGTCCCTCCACAGATCGTCGGCGAGGGTCGGTGACAGCAAGAGCGGCAA
GGGCGGCGGCGGCGGATCGTCGGTGGTGGTGGGAAAGGACTCCTCCCGAC
ACCTGTGGGGGATCCCTAACGTCGTGTACACGTTCACGCACGGGTTCATG
ATGGAGATGCTGCAGCTCAAGATGCTCAAGAGCCAGACCAACCTCCTCAA
GACGAGTATCCAGAAGCTCAAAGACAGGCTCGAGACCCAGAAGAGACACG
AGCAATTCAAGAACCAGACCATCGACAAATCCCAAAAGCAGAAGGCCGGA
ACGCTGTCCGTCATGAAGTACAAGGTCACCATGTCACAGGCGGCGACGAA
CGCGCGCGAGTCCACCCGGCGACGGAAGAACTCTGTGACGTCGAGGGCAA
TGCAAAGGGTCAAGCGCCCCGTGCAGCAGAAGTGGACGGAGGCTCTGGAC
TGGAAGAAGCGGAGCTGTCTCCTCACGGGGGAGAGCCTGTCTCTCTTCAG
CGACCCGAAGGACACGGAGCCGAGCCAGATCGTGTACCTTAAGGGTGCCA
CGGCGGAGCCCGAGCTAGGACAGGCTTTCAAGGACTCGGCCTTCCGCGTG
GAGACGAACAAGTGGAAGAAGGGCGACGAGGTGGTGGACGGAACGGAGCG
GCGGACGTTCACGTTCCTCGCCGAGAGCAAGGACGACAAGGAGCTGTGGC
TCTACCAGATCAGG
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