mRNA_Ecto-sp8_S_contig9550.31168.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9550.31168.1
Unique NamemRNA_Ecto-sp8_S_contig9550.31168.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9550.31168.1 vs. uniprot
Match: D7FLA7_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA7_ECTSI)

HSP 1 Score: 468 bits (1205), Expect = 3.430e-152
Identity = 234/250 (93.60%), Postives = 237/250 (94.80%), Query Frame = 1
Query:    1 ELFAVKQISLRDGLREEINTLEAEIDLMKDLDHRHIVRYCGTDRGTRHLYIFLEYVPGGSIASMLQQFGVFREDLVRRFMHQILLGTRYLHDKGIIHRDIKGANVLVTEQGIAKLADFGCSKQFQGVTTPSFDDSLRTMRGSVPWMAPEMAKQTGHGRSADVWSVGATMIEMYTARYPWPPFSNNMAAIYHVATATAPPAFPENISSAATDFLSKCLIIDPDARLKASELLQHP---VCERNQKERAGSG 741
            ELFAVKQISLR GLR+EINTLEAEIDLMKDLDHRHIVRYCGTDRGTRHLYIFLEYVPGGSIASMLQQFGVFREDLVRRFMHQILLGTRYLHDKGIIHRDIKGANVLVTEQGIAKLADFGCSKQFQGVTTPSFDDSLRTMRGSVPWMAPEMAKQTGHGRSADVWSVGATMIEMYTARYPWPPFSNNMAAIYHVATATAPPAFPENISS ATDFLSKCLIIDPDARLKA+ELLQHP   V E   +   G G
Sbjct: 1191 ELFAVKQISLRHGLRDEINTLEAEIDLMKDLDHRHIVRYCGTDRGTRHLYIFLEYVPGGSIASMLQQFGVFREDLVRRFMHQILLGTRYLHDKGIIHRDIKGANVLVTEQGIAKLADFGCSKQFQGVTTPSFDDSLRTMRGSVPWMAPEMAKQTGHGRSADVWSVGATMIEMYTARYPWPPFSNNMAAIYHVATATAPPAFPENISSEATDFLSKCLIIDPDARLKANELLQHPFLLVAEAELEASFGQG 1440          
BLAST of mRNA_Ecto-sp8_S_contig9550.31168.1 vs. uniprot
Match: A0A6H5JFJ5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ5_9PHAE)

HSP 1 Score: 466 bits (1200), Expect = 2.160e-151
Identity = 238/274 (86.86%), Postives = 241/274 (87.96%), Query Frame = 1
Query:    1 ELFAVKQISLRDGLREEINTLEAEIDLMKDLDHRHIVRYCGTDRGTRHLYIFLEYVPGGSIASMLQQFGVFREDLVRRFMHQILLGTRYLHDKGIIHRDIKGANVLVTEQGIAKLADFGCSKQFQGVTTPSFDDSLRTMRGSVPWMAPEMAKQTGHGRSADVWSVGATMIEMYTARYPWPPFSNNMAAIYHVATATA--------------------------PPAFPENISSAATDFLSKCLIIDPDARLKASELLQHPVCERNQKERAGSGL 744
            +LFAVKQISLR GLREEI+TLEAEIDLMKDLDHRHIVRYCGTDRGTRHLYIFLEYVPGGSIASMLQQFGVFREDLVRRFMHQILLGTRYLHDKGIIH DIKGANVLVTEQGIAKLADFGCSKQFQGVTTPSFDDSLRTMRGSVPWMAPEMAKQTGHGRSADVWSVGATMIEMYTARYPWPPFSNNMAAIYHVATATA                          PPAFPE+ISS ATDFLSKCLIIDP ARLKASELLQHPVCERNQ   AGSGL
Sbjct: 1191 QLFAVKQISLRGGLREEISTLEAEIDLMKDLDHRHIVRYCGTDRGTRHLYIFLEYVPGGSIASMLQQFGVFREDLVRRFMHQILLGTRYLHDKGIIHSDIKGANVLVTEQGIAKLADFGCSKQFQGVTTPSFDDSLRTMRGSVPWMAPEMAKQTGHGRSADVWSVGATMIEMYTARYPWPPFSNNMAAIYHVATATADKRIRRNAASYNNVNLRALPYLSISQPPAFPEHISSEATDFLSKCLIIDPYARLKASELLQHPVCERNQNACAGSGL 1464          
BLAST of mRNA_Ecto-sp8_S_contig9550.31168.1 vs. uniprot
Match: A0A835ZGH4_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH4_9STRA)

HSP 1 Score: 313 bits (801), Expect = 6.450e-105
Identity = 153/221 (69.23%), Postives = 179/221 (81.00%), Query Frame = 1
Query:    1 ELFAVKQISLRDGLREEINTLEAEIDLMKDLDHRHIVRYCGTDRGTRHLYIFLEYVPGGSIASMLQQFGVFREDLVRRFMHQILLGTRYLHDKGIIHRDIKGANVLVTEQGIAKLADFGCSKQFQGVTTPSFDDSLRTMRGSVPWMAPEMAKQTGHGRSADVWSVGATMIEMYTARYPWPPFSNNMAAIYHVATATAPPAFPENISSAATDFLSKCLIIDP 663
            ELFA+KQISL DG + E   LEAEI +MK L HRHIVRY GT RG R+LYIFLEYVPGGSIA+ML +FGVF+E L+RRFM+QILLG  YLH+ GI+H DIKGANVLVTEQGIAKLADFGCSKQ QG+ T SF++S   +RGSV WMAPE+ KQT HGRSADVWS GATMIEM TA  PWP F+NN+AA++HVAT   P    + +S+AA DFL++C+ IDP
Sbjct:   23 ELFAIKQISLMDGTQSEAEKLEAEIHVMKSLCHRHIVRYIGTSRGDRNLYIFLEYVPGGSIATMLSRFGVFQEGLIRRFMYQILLGVSYLHNNGIMHCDIKGANVLVTEQGIAKLADFGCSKQLQGMRTQSFEESAHGIRGSVMWMAPEVIKQTRHGRSADVWSAGATMIEMGTAHRPWPAFTNNLAAMFHVATTREPXXXXDGLSAAANDFLARCMCIDP 243          
BLAST of mRNA_Ecto-sp8_S_contig9550.31168.1 vs. uniprot
Match: A0A7S2CCW9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CCW9_9STRA)

HSP 1 Score: 299 bits (766), Expect = 7.960e-99
Identity = 148/240 (61.67%), Postives = 184/240 (76.67%), Query Frame = 1
Query:    1 ELFAVKQISLRDGLREEINTLEAEIDLMKDLDHRHIVRYCGTD-RGTRHL-YIFLEYVPGGSIASMLQQFGVFREDLVRRFMHQILLGTRYLHDKGIIHRDIKGANVLVTEQGIAKLADFGCSKQFQGVTTPSFDDSL-RTMRGSVPWMAPEMAKQTGHGRSADVWSVGATMIEMYTARYPWPPFSNNMAAIYHVATATAPPAFPENISSAATDFLSKCLIIDPDARLKASELLQHPVCE 711
            +LFAVKQ+ L D    +  TL  EI LMKDLDHRHIVRY GT     ++L YIFLEYVPGGSIASML QFG+F E L++R+ HQI+ G  YLH KGIIHRDIKGANVLV EQG+AKLADFGCSKQ QG+ + + +DS+ +T+ GSVPWMAPE+ KQ+G+GR++DVWSVGAT+IEM TA +PWP  SNN AAI+ +A AT PPA P ++S    DFL + ++IDP AR  +++L+ HP  E
Sbjct:   58 KLFAVKQVGLSDDSFMDAKTLMTEITLMKDLDHRHIVRYLGTQIESEKNLFYIFLEYVPGGSIASMLGQFGIFNEALIQRYTHQIMQGVAYLHGKGIIHRDIKGANVLVNEQGVAKLADFGCSKQLQGLCSNTLEDSMNKTVSGSVPWMAPEVIKQSGYGRTSDVWSVGATVIEMATAHHPWPALSNNFAAIFEIANATTPPAIPGSLSEDGRDFLRRAMVIDPKARASSADLVDHPFLE 297          
BLAST of mRNA_Ecto-sp8_S_contig9550.31168.1 vs. uniprot
Match: F0YGX3_AURAN (Protein kinase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGX3_AURAN)

HSP 1 Score: 287 bits (734), Expect = 1.850e-94
Identity = 141/234 (60.26%), Postives = 180/234 (76.92%), Query Frame = 1
Query:    1 ELFAVKQISLR-DGLREEINTLEAEIDLMKDLDHRHIVRYCGTD--RGTRHLYIFLEYVPGGSIASMLQQFGVFREDLVRRFMHQILLGTRYLHDKGIIHRDIKGANVLVTEQGIAKLADFGCSKQFQGVTTPSFDDSLRTMRGSVPWMAPEMAKQTGHGRSADVWSVGATMIEMYTARYPWPPFSNNMAAIYHVATATAPPAFPENISSAATDFLSKCLIIDPDARLKASELL 693
            ELFA K+I L  D    E++ LE+EI L+K +DH+H+VRY GT+  R    +Y+FLEYVPGGSIASML QFGVF E L+R ++ QIL G RYLHD+ I+HRDIKG NVLV + G+AKLADFGCSKQ QG+ T + + SL+ ++GSVPWMAPE+ KQ+GHGR ADVWSVGAT+IEM TA++PWP FSNN+ A++ +AT+T PP  P+++S AA  F+ +CL IDP  R  A ELL
Sbjct:   27 ELFACKRIGLAPDAGAAELHELESEIRLLKTIDHKHVVRYLGTELRRSEGLMYLFLEYVPGGSIASMLAQFGVFSEVLIRIYVTQILRGVRYLHDRKIVHRDIKGGNVLVNDSGVAKLADFGCSKQLQGMRTGTLEQSLQAIQGSVPWMAPEVIKQSGHGRGADVWSVGATVIEMATAKHPWPKFSNNLTALFQIATSTEPPPCPDSLSPAAKAFIDRCLQIDPKDRATAKELL 260          
BLAST of mRNA_Ecto-sp8_S_contig9550.31168.1 vs. uniprot
Match: A0A833VX79_PHYIN (Protein kinase domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833VX79_PHYIN)

HSP 1 Score: 283 bits (725), Expect = 3.250e-92
Identity = 138/237 (58.23%), Postives = 173/237 (73.00%), Query Frame = 1
Query:    1 ELFAVKQISLR----DGLREEINTLEAEIDLMKDLDHRHIVRYCGTDRGTRHLYIFLEYVPGGSIASMLQQFGVFREDLVRRFMHQILLGTRYLHDKGIIHRDIKGANVLVTEQGIAKLADFGCSKQFQGVTTPSFDDSLRTMRGSVPWMAPEMAKQTGHGRSADVWSVGATMIEMYTARYPWPPFSNNMAAIYHVATATAPPAFPENISSAATDFLSKCLIIDPDARLKASELLQH 699
            ELFA+K+I +     D    ++  L  EI LM +L H+HIVRY G+ R   H YIF+EYVPGGSIASML+QF  F EDL+R F  QI+ G  YLH+ GIIHRDIKGANVLV EQG++KLADFGCSKQ   + T S ++SLR++RGS+PWMAPE+ KQ GHG  AD+WS+GAT+IEM TA++PWP   N +AA+Y +A ATAPP  PE++SS A  FL +C  IDP+ R  A EL+ H
Sbjct:   88 ELFALKEIEIHSRPNDDQVTQMQKLGEEISLMNNLSHKHIVRYKGSYRSENHFYIFMEYVPGGSIASMLKQFDAFSEDLIRIFTRQIVQGVAYLHEMGIIHRDIKGANVLVNEQGVSKLADFGCSKQIPQMLTTSLEESLRSIRGSIPWMAPEVVKQIGHGYKADIWSIGATVIEMATAKHPWPNCHNGLAAMYTIAMATAPPPLPEHLSSEAKSFLQRCFCIDPEERATALELVAH 324          
BLAST of mRNA_Ecto-sp8_S_contig9550.31168.1 vs. uniprot
Match: A0A2P4XUE2_9STRA (STE/STE11 protein Kinase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XUE2_9STRA)

HSP 1 Score: 286 bits (732), Expect = 4.880e-90
Identity = 138/237 (58.23%), Postives = 173/237 (73.00%), Query Frame = 1
Query:    1 ELFAVKQISLRDGLREE----INTLEAEIDLMKDLDHRHIVRYCGTDRGTRHLYIFLEYVPGGSIASMLQQFGVFREDLVRRFMHQILLGTRYLHDKGIIHRDIKGANVLVTEQGIAKLADFGCSKQFQGVTTPSFDDSLRTMRGSVPWMAPEMAKQTGHGRSADVWSVGATMIEMYTARYPWPPFSNNMAAIYHVATATAPPAFPENISSAATDFLSKCLIIDPDARLKASELLQH 699
            ELFA+K+I +     ++    +  L  EI LM +L H+HIVRY G+ R   H YIF+EYVPGGSIASML+QF  FREDL+R F  QI+ G  YLH  GIIHRDIKGANVLV EQG++KLADFGCSKQ   + T S ++SLR++RGS+PWMAPE+ KQTGHG  AD+WS+GAT+IEM TA++PWP   N +AA+Y +A ATAPP  PE++S  A  FL +C  IDP+ R  A EL +H
Sbjct:  348 ELFALKEIDIHSSPNDDQVTQMQKLGEEISLMNNLSHKHIVRYKGSHRSANHFYIFMEYVPGGSIASMLKQFDAFREDLIRIFTRQIVQGVVYLHQMGIIHRDIKGANVLVNEQGVSKLADFGCSKQIPQMLTTSLEESLRSIRGSIPWMAPEVVKQTGHGYKADIWSIGATVIEMATAKHPWPHCHNGLAAMYTIAMATAPPPLPEHLSPEAKSFLQRCFCIDPEERATAVELAEH 584          
BLAST of mRNA_Ecto-sp8_S_contig9550.31168.1 vs. uniprot
Match: A0A6A3MXD8_9STRA (Protein kinase domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MXD8_9STRA)

HSP 1 Score: 285 bits (730), Expect = 2.460e-89
Identity = 138/238 (57.98%), Postives = 172/238 (72.27%), Query Frame = 1
Query:    1 ELFAVKQISLRDGLREE----INTLEAEIDLMKDLDHRHIVRYCGTDRGTRHLYIFLEYVPGGSIASMLQQFGVFREDLVRRFMHQILLGTRYLHDKGIIHRDIKGANVLVTEQGIAKLADFGCSKQFQGVTTPSFDDSLRTMRGSVPWMAPEMAKQTGHGRSADVWSVGATMIEMYTARYPWPPFSNNMAAIYHVATATAPPAFPENISSAATDFLSKCLIIDPDARLKASELLQHP 702
            ELFA+K+I +      +    +  L  EI LM +L H+HIVRY G+ R   H +IF+EYVPGGSIASML+QF  F EDL+R F  QI+ G  YLH  GIIHRDIKGANVLV EQG++KLADFGCSKQ   + T S ++SLR++RGS+PWMAPE+ KQTGHG  AD+WS+GAT+IEM TA++PWP   N +AA+Y +A ATAPP  PEN+S  A  FL +C  IDP+ R  A EL +HP
Sbjct:  386 ELFALKEIEIHSSPNADQVTQMQKLGEEIALMNNLSHKHIVRYKGSHRAANHFFIFMEYVPGGSIASMLKQFDAFSEDLIRIFTRQIVQGVIYLHQMGIIHRDIKGANVLVNEQGVSKLADFGCSKQIPQMLTTSLEESLRSIRGSIPWMAPEVVKQTGHGYKADIWSIGATVIEMATAKHPWPHCHNGLAAMYSIAMATAPPPLPENLSPEAKSFLQRCFCIDPEERATALELAEHP 623          
BLAST of mRNA_Ecto-sp8_S_contig9550.31168.1 vs. uniprot
Match: A0A225WA86_9STRA (STE/STE11 protein kinase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WA86_9STRA)

HSP 1 Score: 284 bits (726), Expect = 2.910e-89
Identity = 138/237 (58.23%), Postives = 173/237 (73.00%), Query Frame = 1
Query:    1 ELFAVKQISLRDGLREE----INTLEAEIDLMKDLDHRHIVRYCGTDRGTRHLYIFLEYVPGGSIASMLQQFGVFREDLVRRFMHQILLGTRYLHDKGIIHRDIKGANVLVTEQGIAKLADFGCSKQFQGVTTPSFDDSLRTMRGSVPWMAPEMAKQTGHGRSADVWSVGATMIEMYTARYPWPPFSNNMAAIYHVATATAPPAFPENISSAATDFLSKCLIIDPDARLKASELLQH 699
            ELFA+K+I +      +    +  L  EI LM +L H+HIVRY G+ R   H YIF+EYVPGGSIASML+QF  FREDL+R F  QI+ G  YLH  GIIHRDIKGANVLV EQG++KLADFGCSKQ   + T S ++SLR++RGS+PWMAPE+ KQTGHG  AD+WS+GAT+IEM TA++PWP   N +AA+Y +A ATAPP  PE++S  A +FL +C  IDP+ R  A EL +H
Sbjct:  337 ELFALKEIEIHSSPNADQVTQMQKLGEEISLMNNLIHKHIVRYKGSHRSANHFYIFMEYVPGGSIASMLKQFDAFREDLIRIFTRQIVQGVVYLHQMGIIHRDIKGANVLVNEQGVSKLADFGCSKQIPQMLTTSLEESLRSIRGSIPWMAPEVVKQTGHGYKADIWSIGATVIEMATAKHPWPQCHNGLAAMYTIAMATAPPPLPEHLSVEAKEFLRRCFCIDPEERATALELSEH 573          
BLAST of mRNA_Ecto-sp8_S_contig9550.31168.1 vs. uniprot
Match: D0P3A1_PHYIT (Mitogen-activated protein kinase kinase kinase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0P3A1_PHYIT)

HSP 1 Score: 283 bits (725), Expect = 3.810e-89
Identity = 138/237 (58.23%), Postives = 173/237 (73.00%), Query Frame = 1
Query:    1 ELFAVKQISLR----DGLREEINTLEAEIDLMKDLDHRHIVRYCGTDRGTRHLYIFLEYVPGGSIASMLQQFGVFREDLVRRFMHQILLGTRYLHDKGIIHRDIKGANVLVTEQGIAKLADFGCSKQFQGVTTPSFDDSLRTMRGSVPWMAPEMAKQTGHGRSADVWSVGATMIEMYTARYPWPPFSNNMAAIYHVATATAPPAFPENISSAATDFLSKCLIIDPDARLKASELLQH 699
            ELFA+K+I +     D    ++  L  EI LM +L H+HIVRY G+ R   H YIF+EYVPGGSIASML+QF  F EDL+R F  QI+ G  YLH+ GIIHRDIKGANVLV EQG++KLADFGCSKQ   + T S ++SLR++RGS+PWMAPE+ KQ GHG  AD+WS+GAT+IEM TA++PWP   N +AA+Y +A ATAPP  PE++SS A  FL +C  IDP+ R  A EL+ H
Sbjct:  334 ELFALKEIEIHSRPNDDQVTQMQKLGEEISLMNNLSHKHIVRYKGSYRSENHFYIFMEYVPGGSIASMLKQFDAFSEDLIRIFTRQIVQGVAYLHEMGIIHRDIKGANVLVNEQGVSKLADFGCSKQIPQMLTTSLEESLRSIRGSIPWMAPEVVKQIGHGYKADIWSIGATVIEMATAKHPWPNCHNGLAAMYTIAMATAPPLLPEHLSSEAKSFLQRCFCIDPEERATALELVAH 570          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9550.31168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLA7_ECTSI3.430e-15293.60Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JFJ5_9PHAE2.160e-15186.86Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835ZGH4_9STRA6.450e-10569.23Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S2CCW9_9STRA7.960e-9961.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0YGX3_AURAN1.850e-9460.26Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A833VX79_PHYIN3.250e-9258.23Protein kinase domain n=1 Tax=Phytophthora infesta... [more]
A0A2P4XUE2_9STRA4.880e-9058.23STE/STE11 protein Kinase n=1 Tax=Phytophthora palm... [more]
A0A6A3MXD8_9STRA2.460e-8957.98Protein kinase domain-containing protein n=4 Tax=P... [more]
A0A225WA86_9STRA2.910e-8958.23STE/STE11 protein kinase n=1 Tax=Phytophthora mega... [more]
D0P3A1_PHYIT3.810e-8958.23Mitogen-activated protein kinase kinase kinase, pu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9550contigEcto-sp8_S_contig9550:4732..7186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score472.6
Seed ortholog evalue1.1e-130
Seed eggNOG ortholog2880.D7FLA7
Model size747
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.MAP kinase kinase kinase activity
EggNOG OGsKOG0198@1,KOG0198@2759
Cds size747
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145316.2943327-CDS-Ecto-sp8_S_contig9550:4731..48871681145316.2943327-CDS-Ecto-sp8_S_contig9550:4731..4887Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9550 4732..4887 -
1681145316.3081698-CDS-Ecto-sp8_S_contig9550:5242..54431681145316.3081698-CDS-Ecto-sp8_S_contig9550:5242..5443Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9550 5243..5443 -
1681145316.3208008-CDS-Ecto-sp8_S_contig9550:5906..59661681145316.3208008-CDS-Ecto-sp8_S_contig9550:5906..5966Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9550 5907..5966 -
1681145316.3337328-CDS-Ecto-sp8_S_contig9550:6531..67601681145316.3337328-CDS-Ecto-sp8_S_contig9550:6531..6760Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9550 6532..6760 -
1681145316.3464332-CDS-Ecto-sp8_S_contig9550:7085..71861681145316.3464332-CDS-Ecto-sp8_S_contig9550:7085..7186Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9550 7086..7186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9550.31168.1prot_Ecto-sp8_S_contig9550.31168.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9550 4732..7186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9550.31168.1

>prot_Ecto-sp8_S_contig9550.31168.1 ID=prot_Ecto-sp8_S_contig9550.31168.1|Name=mRNA_Ecto-sp8_S_contig9550.31168.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=249bp
ELFAVKQISLRDGLREEINTLEAEIDLMKDLDHRHIVRYCGTDRGTRHLY
IFLEYVPGGSIASMLQQFGVFREDLVRRFMHQILLGTRYLHDKGIIHRDI
KGANVLVTEQGIAKLADFGCSKQFQGVTTPSFDDSLRTMRGSVPWMAPEM
AKQTGHGRSADVWSVGATMIEMYTARYPWPPFSNNMAAIYHVATATAPPA
FPENISSAATDFLSKCLIIDPDARLKASELLQHPVCERNQKERAGSGL*
back to top

mRNA from alignment at Ecto-sp8_S_contig9550:4732..7186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9550.31168.1 ID=mRNA_Ecto-sp8_S_contig9550.31168.1|Name=mRNA_Ecto-sp8_S_contig9550.31168.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2455bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9550:4732..7186- (Ectocarpus species8 EcLAC_412)
GAGCTGTTCGCGGTGAAGCAGATAAGCCTCAGGGACGGTCTCAGGGAGGA AATCAACACCCTCGAGGCAGAGATCGATCTCATGAAAGACCTCGACCACA GGTGAGGATTGTCCGTAGCTGATGGTGTTATCTGAGAGGCATGCACATGA AGTGCACGTACCCCACGCTCTTGCGGCGGTTGTATGAAACATCGAAATAA ATTGTATCGGCAAGAAAGTGACACTTCAGACCTGCTCACGTGTGTTCCCT TGGCTGTGGGAGACTAGTATCCTCATCCTAGGTTAGAACATGAGGCAAAA CTATATCGTGCCGGTGTGGGCTTGAACTTCGATAAAGTCAAACTTCAACC GTGCTTGCAGGCCCTCCTGCACCCCTAAGCCGGTCTTACATACTTCATGG TGCTGCCTTGGCGCTATTGGATGCAGACACATCGTTCGCTACTGTGGCAC CGACCGAGGAACGCGGCACCTGTACATCTTTCTTGAGTATGTCCCGGGTG GGTCGATCGCAAGCATGCTGCAACAGTTCGGAGTGTTCAGAGAAGACCTG GTCAGGCGGTTCATGCACCAAATCTTGCTCGGAACGCGGTACCTGCATGA CAAAGGGATCATCCACAGAGACATAAAAGGCGCCAACGTCCTGGTTACTG AACAGGTACGACTGTATATTGAAGTATATCCCGTTGCAGCACCGCGAATC GGTCAGAATAACAACAATGGACACCGCTTCACTGCAAACATATAGTCACA CTTTCGGTGGAACTCCGTCGTGCAACATCTATCGATTTTAACTCTCGAAA TAGCCGTCACCTACCATGCGCAGAGTTGTTATTCTTCCGCAGTTTCTCCT GATGTCTACGACCGTGCAGTACATATATATGTAGCTCGTGCCTTCAGCCA TCCCCAATAACATGCTGTGTTCCATCCACAAGCAATTGCGACTCTTCGTT GTAGGCGTTCCTTCGACTTGTGTGCCTCTCCGTGTCGCACGTTGTAGATC ACGACATTCTGTCTTAACTGTGCAGTAAACCCTTGGAGATTGTAAGCAGC ATATGCGAGCCCCAGGGCCACACACACTAAATTTGTTTCAACAGGAACCT TGAAAGTAGGTTAACGTCACGCTGCTGTGCCCGGAAACGCTATAGACAGC TAGCGAGGCGATGCCACCGTTATGCCCACTTCGCGTATCGTATCGCACTT CTTGTTGACTCGGCTCTCAGGGCATCGCTAAACTGGCGGACTTCGGGTGC TCGAAGCAGTTTCAAGGAGTAACCACTCCGGTGAGAACGACCTACAGTAC ACACGAAAACGCCATTGTACCTACCTGAGCAACAACACCACAGTATCCTT GTCTAAACAGTTTGTGCCAGTTTGAATCTGAAGGGGGTGTCAACATATTG TTGAGCAATAATGCATAGCAGAACTCTCGGGCACTTAAAAAAACCAGTAG TCAATCATGTTCGCCATTGACCACACCATTTTATGAATATCGGTGCAGTC AGCGCAACCGAGTTCTTCAGTACATTTCGGCGTGCTTGGTGACGTTGACC GTCTTCTCTCGATTTTGGGAGAGCTTTGCGATGGTCGCGACAAATCCGTT GGGAACATACGTAAGACTAAGATATGTTTTGGGGGGAAACGCTTGCGATC AACGTCACCTGTAGACGACGGCCAAAGAACGGAGGACGGTCGTCTTGGGG GTAAAACGCTGTTCCAATGTGCATGGCTCGTGTCGCGTTTCAGAGCTTCG ACGATAGCCTAAGGACCATGCGGGGGTCGGTGCCGTGGATGGCTCCCGAG ATGGCCAAGCAGACGGGCCACGGCCGAAGCGCCGACGTGTGGAGCGTAGG CGCGACGATGATCGAGATGTACACGGCTCGGTATCCCTGGCCTCCGTTCT CGAACAACATGGCTGCCATCTACCACGTCGCCACCGCCACAGCAGTGAGT TCATGAGTCACTATGTGCGTATTTCCTTGGTTGAGAGGGTGTCATATTCT TTTGGTCGCTTCGCTTCCGCCGTACAGCGAACGGGCACGATTGGCCATAT TCTTTGTGCTTCGACGACTGAAGGATGGTGATGTTCCACGGCTAAGTGCC TCGATCAACAGTGCACACGCCACATATCGCTGCCATCGCTCATTACCCAG CCAAATGGTGAGATTGCAATTCTAACGACCTCAGCTCTTACGAGCGTCGT GACGATAGCTATACCAGGTGTCTAGGACAAGAGAATAAGAAGAAATGCTG CATCCAACAACACTGTTCGTATCCTTCCTTACCGCTGTCCACCTCGCAGC CACCGGCGTTTCCCGAAAACATTTCCTCGGCAGCGACGGATTTTCTGTCG AAATGTCTCATCATCGACCCTGATGCGCGGTTGAAGGCCAGCGAACTTCT GCAGCACCCGGTATGCGAGCGGAACCAAAAGGAACGCGCAGGCTCTGGGT TGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9550:4732..7186-

>mRNA_Ecto-sp8_S_contig9550.31168.1 ID=mRNA_Ecto-sp8_S_contig9550.31168.1|Name=mRNA_Ecto-sp8_S_contig9550.31168.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=747bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9550:4732..7186- (Ectocarpus species8 EcLAC_412)
GAGCTGTTCGCGGTGAAGCAGATAAGCCTCAGGGACGGTCTCAGGGAGGA
AATCAACACCCTCGAGGCAGAGATCGATCTCATGAAAGACCTCGACCACA
GACACATCGTTCGCTACTGTGGCACCGACCGAGGAACGCGGCACCTGTAC
ATCTTTCTTGAGTATGTCCCGGGTGGGTCGATCGCAAGCATGCTGCAACA
GTTCGGAGTGTTCAGAGAAGACCTGGTCAGGCGGTTCATGCACCAAATCT
TGCTCGGAACGCGGTACCTGCATGACAAAGGGATCATCCACAGAGACATA
AAAGGCGCCAACGTCCTGGTTACTGAACAGGGCATCGCTAAACTGGCGGA
CTTCGGGTGCTCGAAGCAGTTTCAAGGAGTAACCACTCCGAGCTTCGACG
ATAGCCTAAGGACCATGCGGGGGTCGGTGCCGTGGATGGCTCCCGAGATG
GCCAAGCAGACGGGCCACGGCCGAAGCGCCGACGTGTGGAGCGTAGGCGC
GACGATGATCGAGATGTACACGGCTCGGTATCCCTGGCCTCCGTTCTCGA
ACAACATGGCTGCCATCTACCACGTCGCCACCGCCACAGCACCACCGGCG
TTTCCCGAAAACATTTCCTCGGCAGCGACGGATTTTCTGTCGAAATGTCT
CATCATCGACCCTGATGCGCGGTTGAAGGCCAGCGAACTTCTGCAGCACC
CGGTATGCGAGCGGAACCAAAAGGAACGCGCAGGCTCTGGGTTGTAG
back to top