mRNA_Ecto-sp8_S_contig9546.31160.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9546.31160.1
Unique NamemRNA_Ecto-sp8_S_contig9546.31160.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9546.31160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9546contigEcto-sp8_S_contig9546:2510..2885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size376
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145315.658515-CDS-Ecto-sp8_S_contig9546:2509..28841681145315.658515-CDS-Ecto-sp8_S_contig9546:2509..2884Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9546 2510..2884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9546.31160.1prot_Ecto-sp8_S_contig9546.31160.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9546 2510..2884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9546.31160.1

>prot_Ecto-sp8_S_contig9546.31160.1 ID=prot_Ecto-sp8_S_contig9546.31160.1|Name=mRNA_Ecto-sp8_S_contig9546.31160.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=125bp
LTTTTTVVAPFAGRPRAGEEGKTNVSEKLSNAHETQKKACGTPLTLCSGT
VLTTEGTRKTPLSSRMVVNQYYFKINQVVRSIVHTDQSPATANDERFTHD
RCPFSSSQKRQQQVSQPSTFAKTSK
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mRNA from alignment at Ecto-sp8_S_contig9546:2510..2885+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9546.31160.1 ID=mRNA_Ecto-sp8_S_contig9546.31160.1|Name=mRNA_Ecto-sp8_S_contig9546.31160.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=376bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9546:2510..2885+ (Ectocarpus species8 EcLAC_412)
CTCACCACCACCACCACCGTCGTCGCGCCGTTTGCGGGGAGACCGAGAGC
CGGGGAAGAAGGCAAAACGAACGTCTCGGAAAAACTTAGCAACGCGCATG
AGACGCAGAAGAAGGCTTGCGGCACTCCACTCACTCTTTGCTCTGGAACA
GTACTTACTACGGAGGGGACACGCAAGACTCCACTCTCGAGCAGGATGGT
CGTTAACCAATACTACTTCAAAATTAACCAAGTTGTGCGGTCAATCGTTC
ACACAGATCAATCACCGGCAACAGCCAACGATGAACGATTCACACACGAT
CGGTGCCCTTTTAGTTCGTCGCAAAAAAGACAACAACAAGTAAGTCAACC
AAGCACTTTTGCGAAAACAAGCAAAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9546:2510..2885+

>mRNA_Ecto-sp8_S_contig9546.31160.1 ID=mRNA_Ecto-sp8_S_contig9546.31160.1|Name=mRNA_Ecto-sp8_S_contig9546.31160.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9546:2510..2885+ (Ectocarpus species8 EcLAC_412)
CTCACCACCACCACCACCGTCGTCGCGCCGTTTGCGGGGAGACCGAGAGC
CGGGGAAGAAGGCAAAACGAACGTCTCGGAAAAACTTAGCAACGCGCATG
AGACGCAGAAGAAGGCTTGCGGCACTCCACTCACTCTTTGCTCTGGAACA
GTACTTACTACGGAGGGGACACGCAAGACTCCACTCTCGAGCAGGATGGT
CGTTAACCAATACTACTTCAAAATTAACCAAGTTGTGCGGTCAATCGTTC
ACACAGATCAATCACCGGCAACAGCCAACGATGAACGATTCACACACGAT
CGGTGCCCTTTTAGTTCGTCGCAAAAAAGACAACAACAAGTAAGTCAACC
AAGCACTTTTGCGAAAACAAGCAAA
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