mRNA_Ecto-sp8_S_contig9544.31157.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9544.31157.1
Unique NamemRNA_Ecto-sp8_S_contig9544.31157.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9544.31157.1 vs. uniprot
Match: A0A6H5K6U8_9PHAE (DUF4440 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6U8_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 4.710e-57
Identity = 84/89 (94.38%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:    1 DQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEEVRNTPAHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYT 267
            DQKAVDAATR+WRD VT+NTEDAPKKTAAIYADDALFWGTVSEEVRNTP HVYDYFDFFARMPKLSMVAYDPAPPRIHGDFA+HAGAYT
Sbjct:   14 DQKAVDAATRHWRDTVTSNTEDAPKKTAAIYADDALFWGTVSEEVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAVHAGAYT 102
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BLAST of mRNA_Ecto-sp8_S_contig9544.31157.1 vs. uniprot
Match: A0A6H5K7Z6_9PHAE (DUF4440 domain-containing protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7Z6_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.270e-56
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:    1 DQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEEVRNTPAHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYT 267
            DQKAVDAATRNWRD VT+NTEDAPKKTAAIYADDALFWGTVSE+VRNTP HVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYT
Sbjct:   79 DQKAVDAATRNWRDTVTSNTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYT 167
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BLAST of mRNA_Ecto-sp8_S_contig9544.31157.1 vs. uniprot
Match: A0A6H5JT29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT29_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 8.030e-35
Identity = 60/89 (67.42%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 DQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEEVRNTPAHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYT 267
            DQKAV A T  W+D VT  T+DAPKKTAA+YA DA+ WGTVSEEVR TP  +YDYFDFFAR+PKL +V Y PAP R++G+FA+ AG YT
Sbjct:  293 DQKAVAATTIVWKDTVTLGTDDAPKKTAALYAPDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRVVEYTPAPVRVYGEFAVEAGTYT 381
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BLAST of mRNA_Ecto-sp8_S_contig9544.31157.1 vs. uniprot
Match: D7FUF8_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF8_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 5.570e-34
Identity = 60/89 (67.42%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:    1 DQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEEVRNTPAHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYT 267
            DQKAV A T  W+D VT  T+DAPKKTAA+YA DA+ WGTVSEEVR TP  +YDYFDFFAR+PKL +V Y PAP R++G FA+ AG YT
Sbjct:  287 DQKAVAATTIVWKDTVTLGTDDAPKKTAALYAADAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPVRVYGQFAVEAGTYT 375
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BLAST of mRNA_Ecto-sp8_S_contig9544.31157.1 vs. uniprot
Match: A0A6H5K0Z5_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0Z5_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 3.100e-33
Identity = 58/89 (65.17%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:    1 DQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEEVRNTPAHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYT 267
            DQKAV   T  W+D VT  T+DAPKKTAA+YA DA+ WGTVSEEVR TP  +YDYFDFFAR+PKL ++ Y PAP R++G+FA+ AG YT
Sbjct:  322 DQKAVAETTIVWKDTVTLGTDDAPKKTAALYAPDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLLEYTPAPVRVYGEFAVQAGTYT 410
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BLAST of mRNA_Ecto-sp8_S_contig9544.31157.1 vs. uniprot
Match: A0A6H5LB09_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB09_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 5.170e-33
Identity = 58/89 (65.17%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:    1 DQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEEVRNTPAHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYT 267
            D KAV   T  W++ VT  TEDAPKKTAA+YA+DA+ WGTVSEEVR TP  +YDYFDFFAR+PKL +V Y PAP R++G FA+ AG YT
Sbjct: 1417 DMKAVSETTIVWKNTVTLGTEDAPKKTAALYAEDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPARVYGQFAVQAGTYT 1505
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9544.31157.1 vs. uniprot
Match: D7FN21_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN21_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.950e-31
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:    1 DQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEEVRNTPAHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYT 267
            + KA    T  W+D VT  TEDAPKKT+A+Y +DA+ WGTVSEEVR TP  +YDYFDFFAR+PKL +V Y PAP R++G FA+ AG YT
Sbjct:  292 EMKAGSETTIVWKDTVTLGTEDAPKKTSALYPEDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYSPAPARVYGQFAVQAGTYT 380
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9544.31157.1 vs. uniprot
Match: A0A6H5JX02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX02_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 9.630e-29
Identity = 52/89 (58.43%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    1 DQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEEVRNTPAHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYT 267
            D++AV   T  W+D VT+ T DAPKKTAA+YA D   WGTVSEEVR+TP  +Y YFD+FAR+P+L +V Y P   R++GDFA+ AG YT
Sbjct:   27 DRRAVAETTVLWKDTVTSGTYDAPKKTAALYAPDGTLWGTVSEEVRDTPQQIYAYFDYFARLPELKVVEYTPVAVRVYGDFAVQAGTYT 115
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9544.31157.1 vs. uniprot
Match: D7FUF9_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF9_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 2.430e-28
Identity = 52/89 (58.43%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:    1 DQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEEVRNTPAHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYT 267
            DQKAV A    W+D VT  T+D P+KTA +YA DA  WGTVSEEVR+TP  +Y YFD+FAR+P L +V Y P   R++GDFA+ AG YT
Sbjct:  331 DQKAVAATAVVWKDTVTMGTDDTPRKTADLYAQDATLWGTVSEEVRDTPEQIYAYFDYFARLPALRLVEYTPVAVRVYGDFAVQAGTYT 419
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9544.31157.1 vs. uniprot
Match: A0A6H5JSB2_9PHAE (DUF4440 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSB2_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 9.070e-28
Identity = 48/89 (53.93%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:    1 DQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEEVRNTPAHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYT 267
            D+K V+  T  W++ VT  T DAP+KTA +YA D + WGTVSEEVR+TP  +YDYFD+FAR+P L +  + P   R++GDFA  AG YT
Sbjct:  103 DRKGVEQTTIRWKEMVTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYFDYFARLPNLRLSEFTPVSLRVYGDFATEAGTYT 191
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9544.31157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6U8_9PHAE4.710e-5794.38DUF4440 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5K7Z6_9PHAE1.270e-5695.51DUF4440 domain-containing protein n=7 Tax=Ectocarp... [more]
A0A6H5JT29_9PHAE8.030e-3567.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUF8_ECTSI5.570e-3467.42Similar to Uncharacterized protein conserved in ba... [more]
A0A6H5K0Z5_9PHAE3.100e-3365.17PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5LB09_9PHAE5.170e-3365.17Reverse transcriptase domain-containing protein n=... [more]
D7FN21_ECTSI1.950e-3161.80Similar to Uncharacterized protein conserved in ba... [more]
A0A6H5JX02_9PHAE9.630e-2958.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUF9_ECTSI2.430e-2858.43Similar to Uncharacterized protein conserved in ba... [more]
A0A6H5JSB2_9PHAE9.070e-2853.93DUF4440 domain-containing protein n=2 Tax=Ectocarp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9544contigEcto-sp8_S_contig9544:967..1609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score190.3
Seed ortholog evalue3.9e-46
Seed eggNOG ortholog2880.D8LFN9
Model size268
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.SnoaL-like domain
EggNOG OGs2S0Y2@2759,COG4875@1
Cds size267
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145315.5627398-CDS-Ecto-sp8_S_contig9544:966..11341681145315.5627398-CDS-Ecto-sp8_S_contig9544:966..1134Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9544 967..1134 +
1681145315.5772169-CDS-Ecto-sp8_S_contig9544:1509..16081681145315.5772169-CDS-Ecto-sp8_S_contig9544:1509..1608Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9544 1510..1608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9544.31157.1prot_Ecto-sp8_S_contig9544.31157.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9544 967..1608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9544.31157.1

>prot_Ecto-sp8_S_contig9544.31157.1 ID=prot_Ecto-sp8_S_contig9544.31157.1|Name=mRNA_Ecto-sp8_S_contig9544.31157.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=89bp
DQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEEVRNTPA
HVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYT
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mRNA from alignment at Ecto-sp8_S_contig9544:967..1609+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9544.31157.1 ID=mRNA_Ecto-sp8_S_contig9544.31157.1|Name=mRNA_Ecto-sp8_S_contig9544.31157.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=643bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9544:967..1609+ (Ectocarpus species8 EcLAC_412)
GACCAGAAGGCCGTCGACGCCGCGACTAGGAACTGGAGGGACAACGTTAC
CGCCAACACCGAGGACGCGCCCAAGAAGACGGCCGCCATCTATGCTGACG
ACGCGCTGTTCTGGGGAACGGTCTCGGAGGAGGTCCGCAACACGCCCGCG
CACGTCTACGACTACTTCGTAAGTGGGGGTTTTGAACCTTATTTTGTTTA
GCAGCAGCGGTAGGAATAGCCAATAACCATCGCGTGAGGTGGTGTGTGCG
TGTTTTTTTGTCTGTATTGTATTTGTGCTCGATACATGTAGCGTCGTGAC
GTCGATCGTTTTCTTTGATCCGATGATATTTGTTTCAACGTTTTTTTTTC
CAACGGCCACCTCGGGCAGGCAGGGGAATGTTTGGTTGCTGCACCACGCG
CTGCTGGCGTAAGCCCAGCGATCTACACATCGACGCTCGGCTCCAAAACC
CAGCCAACATTTTCCAAGCTTGAATTACCCGCACAAGATTGTGAAACACA
CCCTTGACTACCCACCTCTGGCCCTTGTTTTCCCTCCACACAGGACTTCT
TTGCTCGCATGCCCAAGCTCTCCATGGTCGCGTACGACCCGGCGCCCCCG
CGCATCCACGGGGACTTCGCCATCCACGCGGGCGCCTACACGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9544:967..1609+

>mRNA_Ecto-sp8_S_contig9544.31157.1 ID=mRNA_Ecto-sp8_S_contig9544.31157.1|Name=mRNA_Ecto-sp8_S_contig9544.31157.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9544:967..1609+ (Ectocarpus species8 EcLAC_412)
GACCAGAAGGCCGTCGACGCCGCGACTAGGAACTGGAGGGACAACGTTAC
CGCCAACACCGAGGACGCGCCCAAGAAGACGGCCGCCATCTATGCTGACG
ACGCGCTGTTCTGGGGAACGGTCTCGGAGGAGGTCCGCAACACGCCCGCG
CACGTCTACGACTACTTCGACTTCTTTGCTCGCATGCCCAAGCTCTCCAT
GGTCGCGTACGACCCGGCGCCCCCGCGCATCCACGGGGACTTCGCCATCC
ACGCGGGCGCCTACACG
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