mRNA_Ecto-sp8_S_contig9537.31148.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9537.31148.1
Unique NamemRNA_Ecto-sp8_S_contig9537.31148.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9537.31148.1 vs. uniprot
Match: D7G3H7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H7_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 6.690e-98
Identity = 232/358 (64.80%), Postives = 246/358 (68.72%), Query Frame = 1 
Query:   70 QRGASGSDAEEGALVGAHAAAASPVSVAPSASAEDPLEADGXXXXXXXXXXXXXXXXXXSAEAAASGLVLAGKVAEAAIPRASQGAAVLPHQGPGYLDAPGSDADESGEAALASDVAAAQAGLREAQERLXXXXRQAGPAAP-------DGSSVVSVPAAGVAGASGARRPTRAAAPAAGGLDVPSLDSGEPAVRRPPTIEGFAAQQALETAKAARKAVAADLDLQRRLEAAASARAVEAQQEVAAEKRKTLAARRENADLVRAQSAACERRLVELRREQQALAILEAQGRQLVDDANIVRGERERTFRRAEERVRQRREDREAAERHVREVRGEGHATAVRAEAVLREEGRSTRPVS 1122
            QRGASGSD+EEGALVGA AAAAS VS APSA+ ++  EA  XXXXX             SAEAAASGLVLAG+VAEAA PR SQGAA L H        PGSDA ESGEAAL                  XXXXRQAGPA P                                    AGGLD PS  +G PAVRRPPTIEGFAAQQA+E AKAARKA AADLD+QRRLE A SARA E QQ+V AEKRK LAARRENA+LVRAQ  ACE R+ ELRREQQ L ILEAQGRQLVDDANIVRGERER FRRAEERVRQRR +REAAER V EVRGEGHATAVRAE+VLR+EGRS RPVS
Sbjct:   24 QRGASGSDSEEGALVGAPAAAASLVSEAPSAAVDNSSEAAXXXXXXADGGDLANAIVATSAEAAASGLVLAGQVAEAASPRVSQGAAALTH--------PGSDAGESGEAALXXXXXXXXXXXXXXXXXXXXXXRQAGPATPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGLDAPSPVAGAPAVRRPPTIEGFAAQQAVEAAKAARKAAAADLDIQRRLEEAVSARAAEVQQDVVAEKRKALAARRENAELVRAQREACECRVAELRREQQVLEILEAQGRQLVDDANIVRGERERIFRRAEERVRQRRAEREAAERRVWEVRGEGHATAVRAESVLRDEGRSMRPVS 373
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BLAST of mRNA_Ecto-sp8_S_contig9537.31148.1 vs. uniprot
Match: D7G6J9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J9_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 2.240e-41
Identity = 104/134 (77.61%), Postives = 113/134 (84.33%), Query Frame = 1 
Query:  721 LQRRLEAAASARAVEAQQEVAAEKRKTLAARRENADLVRAQSAACERRLVELRREQQALAILEAQGRQLVDDANIVRGERERTFRRAEERVRQRREDREAAERHVREVRGEGHATAVRAEAVLREEGRSTRPVS 1122
            ++RRLE AASARA EAQ++V AEK KTLAARRENA+LVRAQS ACERR+ ELRREQQAL ILEAQGRQLV DAN+VRGERER FRRA+ER RQR        R V EVRGEGHATAVRAE+VLREEGRS RPVS
Sbjct:    1 MRRRLEEAASARAAEAQRDVVAEKPKTLAARRENAELVRAQSEACERRVAELRREQQALEILEAQGRQLVIDANVVRGERERIFRRADERARQRXXXXXXXXRRVWEVRGEGHATAVRAESVLREEGRSMRPVS 134
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BLAST of mRNA_Ecto-sp8_S_contig9537.31148.1 vs. uniprot
Match: A0A6H5KZQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ9_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 3.450e-41
Identity = 230/642 (35.83%), Postives = 255/642 (39.72%), Query Frame = 1 
Query:    1 MGAAESDRGSGASSPPPSGSSSPQRGASGSDAEEGALVGAHAAAASPVSVAPSASAEDPLEADGXXXXXXXXXXXXXXXXXXSAEAAASGLVLAGKVAEAAIPRASQGAAVLPHQGPGYLDAP-----------------------------------------------------------------------------------------------------------------------------------------------GSDADESGEAALASDVAAA----------------QAGLREAQERLXXXXR---------------QAGPAAPDGSSVVSVPAAGV-AGASGARRPTRAAAPAAGGLDVPSLDSG------------------------------------------------------------EPA----------------------------------VRRPPTIEGFAAQQALETAKAARKAVAADLDLQRRLEAAASARAVEAQQEVAAEKRKTLAARRENADLVRAQSAACERRLVELRREQQALAILEAQGRQLVDDANIVRGERERTFRRAEERVRQRREDREAAERHVREVRGEGHATAVRAEAVLREEGRSTRPV 1119
            M AA S  GS AS PP SGS SP+R ASGSD+EEGALVGA AA ASP SV              XXXXXXXXXXXXXX    SA AAASGL+LA +VA A  PRASQGAA L  QGPGYLDAP                                                                                                                                               G DA  SG A  A+DV AA                QAG      R+    R               QAG A+P G S V  PA     GA  ARR +R   P AGG   PS  +G                                                            EP                                   VR+PPTI  FAAQQA+E A AARKA AAD+ L RRLE AASARA EA ++V A+KRK +AAR ENA+LVRAQ  ACERR  ELRREQ+AL +LEA GRQL+ +AN+ RG+RE         V +RRE RE AER VR VRGEGHATA  AE+VL  EGRS RPV
Sbjct:    1 MSAAGSADGSVASPPPSSGSPSPRRDASGSDSEEGALVGAPAATASPASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVAASANAAASGLLLASQVAAADSPRASQGAAALIDQGPGYLDAPVSRRQAFSDSVSLVSGLVENWSVEGRERLLAELLRGRHDPLSPVVSDPDLPATLRLMQTLSESDEGADPRLSDSLALARNLQAADNALEAHSKAVLRRERKTASGGSFRSPAKRALARKPSRPPAPVFTTNRYSPLSVAASSQGPDAGASGAAESAADVTAAEXXXXXXXXXXXXXRQQAGSASPXVRMATRTRPVVRRGPWGRSPEXQQAGSASPVGRSFVGTPADREDGGADAARRSSRVVGPVAGGQGPPSPAAGVSTVRQPPTIASFAAQQAVEAATAARKAAAADVALSRRLEEAASARAEEAHRDVVXRRGPEPTLGGGRVRPGGGSAPGRSSPKAEGCGGPPAAGVSTVRQPPTIASFAAQQAVEAATAARKAAAADVALSRRLEEAASARAEEAHRDVVAQKRKAVAARSENAELVRAQREACERRAAELRREQRALELLEADGRQLIAEANVARGQRES--------VCERREAREEAERRVRAVRGEGHATARMAESVLSAEGRSMRPV 634
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BLAST of mRNA_Ecto-sp8_S_contig9537.31148.1 vs. uniprot
Match: D7G6K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K0_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.010e-19
Identity = 65/100 (65.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:   70 QRGASGSDAEEGALVGAHAAAASPVSVAPSASAEDPLEADGXXXXXXXXXXXXXXXXXXSAEAAASGLVLAGKVAEAAIPRASQGAAVLPHQGPGYLDAP 369
            QRGASGSD+EEGALVGA AAAASPVS APSA+A++     G                  SAEAAASGL LA +VAEAA PRASQGAAVL HQG GYLDAP
Sbjct:   24 QRGASGSDSEEGALVGAPAAAASPVSEAPSAAADNXXXXXGASCEDADFDDLANAIVAASAEAAASGLELADQVAEAASPRASQGAAVLEHQGSGYLDAP 123
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9537.31148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G3H7_ECTSI6.690e-9864.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6J9_ECTSI2.240e-4177.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZQ9_9PHAE3.450e-4135.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6K0_ECTSI1.010e-1965.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9537contigEcto-sp8_S_contig9537:3941..5779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1122
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_004660.1
Cds size1122
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145314.5584476-CDS-Ecto-sp8_S_contig9537:3940..40251681145314.5584476-CDS-Ecto-sp8_S_contig9537:3940..4025Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9537 3941..4025 +
1681145314.5716627-CDS-Ecto-sp8_S_contig9537:4313..45971681145314.5716627-CDS-Ecto-sp8_S_contig9537:4313..4597Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9537 4314..4597 +
1681145314.584441-CDS-Ecto-sp8_S_contig9537:5026..57791681145314.584441-CDS-Ecto-sp8_S_contig9537:5026..5779Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9537 5027..5779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9537.31148.1prot_Ecto-sp8_S_contig9537.31148.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9537 3941..5779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9537.31148.1

>prot_Ecto-sp8_S_contig9537.31148.1 ID=prot_Ecto-sp8_S_contig9537.31148.1|Name=mRNA_Ecto-sp8_S_contig9537.31148.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=374bp
MGAAESDRGSGASSPPPSGSSSPQRGASGSDAEEGALVGAHAAAASPVSV
APSASAEDPLEADGASGEDEDGGDLANAIAAASAEAAASGLVLAGKVAEA
AIPRASQGAAVLPHQGPGYLDAPGSDADESGEAALASDVAAAQAGLREAQ
ERLRRAQRQAGPAAPDGSSVVSVPAAGVAGASGARRPTRAAAPAAGGLDV
PSLDSGEPAVRRPPTIEGFAAQQALETAKAARKAVAADLDLQRRLEAAAS
ARAVEAQQEVAAEKRKTLAARRENADLVRAQSAACERRLVELRREQQALA
ILEAQGRQLVDDANIVRGERERTFRRAEERVRQRREDREAAERHVREVRG
EGHATAVRAEAVLREEGRSTRPVS
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mRNA from alignment at Ecto-sp8_S_contig9537:3941..5779+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9537.31148.1 ID=mRNA_Ecto-sp8_S_contig9537.31148.1|Name=mRNA_Ecto-sp8_S_contig9537.31148.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1839bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9537:3941..5779+ (Ectocarpus species8 EcLAC_412)
ATGGGCGCCGCTGAGTCTGACCGGGGATCAGGTGCGTCGTCGCCTCCGCC
TTCCGGGTCGTCCTCCCCTCAGCGAGGTGCGTCAGGTGGGTCCCGTGTGT
CTCGGATTGTGCGTCAGGGGCCGGTGACTCGGTCGCAGTCGGGTCGAACC
CCTCAGAGGGGTACGACGGGTGGGTCGCAAACGTCTCCGCGCGTCCGACG
TGGACCGGTCACGCGGTCCCAATCGAGTAGGTCCGGGCGTAGGACCACCT
TGAGTGAGTACCTGCCTCGTCGCGTGGTGCTGACCTCGTCGCCCTCAAAT
ACTCCCGCCCGTTCGTCGCGTCACCTTTCGTCCCGTGTCGATGATTCGCG
TTCCTATGCGTCGGTCTTGTCAGGCTCTGACGCCGAGGAGGGCGCCCTGG
TCGGAGCGCATGCGGCGGCGGCGTCGCCGGTCTCGGTGGCCCCGTCGGCG
TCTGCGGAGGACCCCCTGGAGGCGGACGGTGCCTCCGGCGAGGATGAGGA
TGGCGGTGACCTCGCCAACGCCATCGCCGCGGCTTCTGCGGAGGCGGCGG
CCAGCGGGTTGGTGCTGGCCGGAAAGGTGGCGGAGGCGGCCATCCCTCGG
GCCTCCCAGGGCGCTGCCGTGTTGCCGCATCAGGGACCGGGATACCTCGA
CGCTCCGGTGAGTCGGCGTCCTGTCGTTTCAGATTCTGTGTCTCTTGTTT
CCGGGTTAGTCGGGAGCTGGTCGGTCGAGCAACGGGAGCAGCTGCTCGCG
GAGCTGCTCAATGACCGCCACGGCCTCTTGTCCCCCGAGATAAGCGACCC
GGGTTTGCCGGCCACTCTGCGTCTTGTGCGGTCGTTTAGTGAGTCGGACG
ACGCTGCTGACCCGCGCCTGGCCGATTCGCTTGCGCTCGCTCGGGACCTG
CAAGCGGCCGGCGATGCGCTAGCGGCGCACTCGCAAGCGGTGGTGCGCCG
TGCGGGTCGGGGTAAGCCGGGTGGTTCGTTCCGTAGCTCGGTCAAAAGGG
TAGCGCGCCGCCAGCCTGCACGTGCTCCCGCGCCGACATTAACCACGACT
CGTTATTACCCGTTGTCGGCGGACGCTCACTCGCAGGGGTCCGACGCTGA
TGAGTCCGGTGAGGCTGCGCTCGCCTCCGACGTCGCCGCGGCTCAGGCCG
GTCTTCGGGAGGCACAGGAGCGCCTCCGGCGGGCGCAGCGCCAGGCTGGG
CCTGCGGCTCCGGACGGATCGTCGGTTGTCAGCGTGCCCGCGGCTGGCGT
AGCTGGTGCCTCCGGGGCTCGTCGTCCTACACGGGCTGCGGCACCCGCCG
CCGGGGGACTGGACGTCCCTTCGCTGGACAGCGGGGAACCTGCGGTCAGG
CGACCGCCCACGATCGAGGGCTTTGCCGCCCAGCAAGCGCTGGAGACCGC
GAAAGCGGCGAGGAAGGCAGTTGCTGCGGATCTGGACCTCCAGCGCCGTC
TAGAGGCGGCCGCGTCAGCTCGGGCGGTCGAAGCCCAGCAGGAAGTCGCC
GCTGAGAAGCGGAAGACTCTCGCGGCGAGGCGAGAGAACGCCGACTTGGT
GCGCGCTCAGAGCGCGGCGTGTGAGCGCCGGTTGGTGGAGCTTCGCCGGG
AGCAGCAGGCGCTAGCGATACTCGAAGCGCAAGGGCGGCAGCTGGTGGAC
GATGCAAACATCGTTCGAGGCGAACGCGAGAGGACCTTCCGACGTGCGGA
GGAGAGGGTTCGACAGCGTCGCGAGGATCGCGAGGCGGCCGAGCGCCATG
TCCGGGAGGTCCGCGGCGAAGGGCACGCGACTGCTGTGCGGGCCGAGGCC
GTTCTCCGCGAAGAAGGGCGTTCGACGCGCCCGGTGTCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9537:3941..5779+

>mRNA_Ecto-sp8_S_contig9537.31148.1 ID=mRNA_Ecto-sp8_S_contig9537.31148.1|Name=mRNA_Ecto-sp8_S_contig9537.31148.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1122bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9537:3941..5779+ (Ectocarpus species8 EcLAC_412)
ATGGGCGCCGCTGAGTCTGACCGGGGATCAGGTGCGTCGTCGCCTCCGCC
TTCCGGGTCGTCCTCCCCTCAGCGAGGTGCGTCAGGCTCTGACGCCGAGG
AGGGCGCCCTGGTCGGAGCGCATGCGGCGGCGGCGTCGCCGGTCTCGGTG
GCCCCGTCGGCGTCTGCGGAGGACCCCCTGGAGGCGGACGGTGCCTCCGG
CGAGGATGAGGATGGCGGTGACCTCGCCAACGCCATCGCCGCGGCTTCTG
CGGAGGCGGCGGCCAGCGGGTTGGTGCTGGCCGGAAAGGTGGCGGAGGCG
GCCATCCCTCGGGCCTCCCAGGGCGCTGCCGTGTTGCCGCATCAGGGACC
GGGATACCTCGACGCTCCGGGGTCCGACGCTGATGAGTCCGGTGAGGCTG
CGCTCGCCTCCGACGTCGCCGCGGCTCAGGCCGGTCTTCGGGAGGCACAG
GAGCGCCTCCGGCGGGCGCAGCGCCAGGCTGGGCCTGCGGCTCCGGACGG
ATCGTCGGTTGTCAGCGTGCCCGCGGCTGGCGTAGCTGGTGCCTCCGGGG
CTCGTCGTCCTACACGGGCTGCGGCACCCGCCGCCGGGGGACTGGACGTC
CCTTCGCTGGACAGCGGGGAACCTGCGGTCAGGCGACCGCCCACGATCGA
GGGCTTTGCCGCCCAGCAAGCGCTGGAGACCGCGAAAGCGGCGAGGAAGG
CAGTTGCTGCGGATCTGGACCTCCAGCGCCGTCTAGAGGCGGCCGCGTCA
GCTCGGGCGGTCGAAGCCCAGCAGGAAGTCGCCGCTGAGAAGCGGAAGAC
TCTCGCGGCGAGGCGAGAGAACGCCGACTTGGTGCGCGCTCAGAGCGCGG
CGTGTGAGCGCCGGTTGGTGGAGCTTCGCCGGGAGCAGCAGGCGCTAGCG
ATACTCGAAGCGCAAGGGCGGCAGCTGGTGGACGATGCAAACATCGTTCG
AGGCGAACGCGAGAGGACCTTCCGACGTGCGGAGGAGAGGGTTCGACAGC
GTCGCGAGGATCGCGAGGCGGCCGAGCGCCATGTCCGGGAGGTCCGCGGC
GAAGGGCACGCGACTGCTGTGCGGGCCGAGGCCGTTCTCCGCGAAGAAGG
GCGTTCGACGCGCCCGGTGTCG
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