mRNA_Ecto-sp8_S_contig9531.31138.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9531.31138.1
Unique NamemRNA_Ecto-sp8_S_contig9531.31138.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9531.31138.1 vs. uniprot
Match: D7FPT4_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPT4_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 1.090e-79
Identity = 192/195 (98.46%), Postives = 193/195 (98.97%), Query Frame = 1
Query:    7 GLESLNITECGLETTEGLEGLTXXXXXHLSSNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTEIGDGLPLGRTLREVNLAHNQLGCFKELLKLAPLEGLRSLTLQDIHFGDNPVCGLSNYKTYVAYHLTQLTSLDMEVVSEESKAFANTVFLKKSMYYNMRSRIVKRHAGHVIRKASE 591
            GLESLNITECGLETTEGLEGLTXXXXXHLSSNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  EIGDGLPLGRTLREVNLAHNQLGCFKELLKLAPLEGLRSLTLQDIHFGDNPVCGLSNYKTYVAYHLTQLTSLDMEVVSEESKAFANTVFLKKSMYYNMRSRIVKRHAGHVIRKA+E
Sbjct:  100 GLESLNITECGLETTEGLEGLTXXXXXHLSSNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGDGLPLGRTLREVNLAHNQLGCFKELLKLAPLEGLRSLTLQDIHFGDNPVCGLSNYKTYVAYHLTQLTSLDMEVVSEESKAFANTVFLKKSMYYNMRSRIVKRHAGHVIRKATE 294          
BLAST of mRNA_Ecto-sp8_S_contig9531.31138.1 vs. uniprot
Match: A0A6H5L7J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J2_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 1.500e-79
Identity = 190/202 (94.06%), Postives = 191/202 (94.55%), Query Frame = 1
Query:    7 GLESLNITECGLETTEGLEGLTXXXXXHLSSNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTEIGDGLPLGRTLREVNLAHNQLGCFKELLKLAPLEGLRSLTLQDIHFGDNPVCGLSNYKTYVAYHLTQLTSLDMEVVSEESKAFANTVFLKKSMYYNMRSRIVKRHAGHVIRKASESQRARFV 612
            GLESLNITECGLETT+GLEGLT XXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   LTEIGDGLPLGRTLREVNLAHNQLGCFKELLKLAPLEGLRSLTLQDIHFGDNPVCGLSNYKTYVAYHLTQLTSLDMEVVSEESKAFANTVFLKKSMYYNMRSRIVKRHAGHVIRKASESQRARF 
Sbjct:  132 GLESLNITECGLETTKGLEGLTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNQLTEIGDGLPLGRTLREVNLAHNQLGCFKELLKLAPLEGLRSLTLQDIHFGDNPVCGLSNYKTYVAYHLTQLTSLDMEVVSEESKAFANTVFLKKSMYYNMRSRIVKRHAGHVIRKASESQRARFA 333          
BLAST of mRNA_Ecto-sp8_S_contig9531.31138.1 vs. uniprot
Match: A0A7S3G5L8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G5L8_9EUKA)

HSP 1 Score: 119 bits (298), Expect = 7.540e-31
Identity = 55/120 (45.83%), Postives = 82/120 (68.33%), Query Frame = 1
Query:  238 LTEIGDGLPLGRTLREVNLAHNQLGCFKELLKLAPLEGLRSLTLQDIHFGDNPVCGLSNYKTYVAYHLTQLTSLDMEVVSEESKAFANTVFLKKSMYYNMRSRIVKRHAGHVIRKASESQ 597
            +  +G  L +   L E+ L+ N++G FKE+  LA L+ LR+L L D  FGDNPVC L NY+TY  +HL QLTSLD  ++ +++K  A T ++KK MYYNMR + +KR+  +++RKA E++
Sbjct:   21 IERVGSALEVNTCLTELGLSDNKIGHFKEIPNLARLKSLRTLVLSDSDFGDNPVCSLCNYQTYAMFHLKQLTSLDCLLLLDDTKVLAETTYMKKKMYYNMRIKTLKRNTSNIMRKAQEAR 140          
BLAST of mRNA_Ecto-sp8_S_contig9531.31138.1 vs. uniprot
Match: A0A2R5G831_9STRA (Leucine-rich repeat-containing protein 9 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G831_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.960e-26
Identity = 60/118 (50.85%), Postives = 76/118 (64.41%), Query Frame = 1
Query:  238 LTEIGDGLPLGRTLREVNLAHNQLGCFKELLKLAPLEGLRSLTLQDIHFGDNPVCGLSNYKTYVAYHLTQLTSLDMEVVSEESKAFANTVFLKKSMYYNMRSRIVKRHAGHVIRKASE 591
            ++EIG  L    +LRE+NLA N+L  FKE+L LA L  L  LTL D HFG NPVC LSNY+TY+  HL  L S D   + EE K   +  F KK MYYNMR + +KR+  +V+RKA +
Sbjct:  172 ISEIGTSLDKLHSLRELNLAENELRTFKEVLNLARLPKLDQLTLNDPHFGSNPVCLLSNYRTYILCHLRSLNSFDGSRIDEEIKLVTDATFYKKRMYYNMRIKTLKRNMTNVLRKAKD 289          
BLAST of mRNA_Ecto-sp8_S_contig9531.31138.1 vs. uniprot
Match: A0A7S1C613_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C613_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.250e-25
Identity = 56/123 (45.53%), Postives = 78/123 (63.41%), Query Frame = 1
Query:  238 LTEIGDGLPLGRTLREVNLAHNQLGCFKELLKLAPLEGLRSLTLQDIHFGDNPVCGLSNYKTYVAYHLTQLTSLDMEVVSEESKAFANTVFLKKSMYYNMRSRIVKRHAGHVIRKASESQRAR 606
            +T IG  L     L  +NLA N +G FKE+  LA +  LR L   + HFGDNPVC L NY+TYV Y L  + +LD   ++E+SK  A   ++KK MYYNMR + +KR+  +VIR+A+E+ + R
Sbjct:  152 ITAIGTALDRNTCLTSLNLADNGIGYFKEIHNLARVPSLRHLCFSEPHFGDNPVCNLCNYQTYVLYQLPHVDTLDTVALAEDSKQLAEATYIKKKMYYNMRIKTLKRNTTNVIRRATEALQGR 274          
BLAST of mRNA_Ecto-sp8_S_contig9531.31138.1 vs. uniprot
Match: A0A7S1DL50_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DL50_HEMAN)

HSP 1 Score: 109 bits (273), Expect = 1.350e-25
Identity = 54/123 (43.90%), Postives = 77/123 (62.60%), Query Frame = 1
Query:  238 LTEIGDGLPLGRTLREVNLAHNQLGCFKELLKLAPLEGLRSLTLQDIHFGDNPVCGLSNYKTYVAYHLTQLTSLDMEVVSEESKAFANTVFLKKSMYYNMRSRIVKRHAGHVIRKASESQRAR 606
            + EIG  L    ++ E+NLA N L  FK+LL L     LR L+  D  +GDNPVC L NY+TYV +HL QL+ +D   + EE K  A   ++KK MYYNMR + +KR+  +++RK  E+ ++R
Sbjct:  154 IREIGSSLDHNSSMVELNLAGNSLWSFKDLLNLTRCASLRKLSFSDPDYGDNPVCELCNYQTYVFFHLQQLSHMDTMPIPEEGKHLAEATYMKKKMYYNMRIKTLKRNTTNILRKGREALQSR 276          
BLAST of mRNA_Ecto-sp8_S_contig9531.31138.1 vs. uniprot
Match: A0A7S4J9W0_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4J9W0_GUITH)

HSP 1 Score: 105 bits (261), Expect = 1.430e-25
Identity = 51/113 (45.13%), Postives = 70/113 (61.95%), Query Frame = 1
Query:  244 EIGDGLPLGRTLREVNLAHNQLGCFKELLKLAPLEGLRSLTLQDIHFGDNPVCGLSNYKTYVAYHLTQLTSLDMEVVSEESKAFANTVFLKKSMYYNMRSRIVKRHAGHVIRK 582
            EIG  L     L E+NLA N+L  FK+LL +     LR L   D  +GDNPVC L NY+TYV +HL QL+ +D   + EE K  A   ++KK MYYNM+ + +KR+  +++RK
Sbjct:    6 EIGSSLDSCTNLSELNLAGNELWSFKDLLNITRSTSLRKLAFNDPDWGDNPVCDLCNYQTYVFFHLQQLSHMDTLPIPEEGKQLAEATYMKKKMYYNMKIKTLKRNTNNILRK 118          
BLAST of mRNA_Ecto-sp8_S_contig9531.31138.1 vs. uniprot
Match: A0A7S0V6C4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V6C4_9CRYP)

HSP 1 Score: 112 bits (279), Expect = 3.880e-25
Identity = 55/123 (44.72%), Postives = 78/123 (63.41%), Query Frame = 1
Query:  238 LTEIGDGLPLGRTLREVNLAHNQLGCFKELLKLAPLEGLRSLTLQDIHFGDNPVCGLSNYKTYVAYHLTQLTSLDMEVVSEESKAFANTVFLKKSMYYNMRSRIVKRHAGHVIRKASESQRAR 606
            + EIG  L    ++ E+NLA NQL  FK+LL L     LR L+  D  +GDNPVC L NY+TYV +HL QL+ +D   + EE K  A   ++KK MYYNMR + +KR+  +++RK  E+ ++R
Sbjct:  154 IREIGSSLDHNSSMLELNLAGNQLWSFKDLLNLTRCASLRKLSFNDPDYGDNPVCELCNYQTYVFFHLQQLSHMDTMPIPEEGKHLAEATYMKKKMYYNMRIKTLKRNTTNILRKGREALQSR 276          
BLAST of mRNA_Ecto-sp8_S_contig9531.31138.1 vs. uniprot
Match: A0A7S0QTT4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QTT4_9CRYP)

HSP 1 Score: 110 bits (276), Expect = 4.510e-25
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = 1
Query:  238 LTEIGDGLPLGRTLREVNLAHNQLGCFKELLKLAPLEGLRSLTLQDIHFGDNPVCGLSNYKTYVAYHLTQLTSLDMEVVSEESKAFANTVFLKKSMYYNMRSRIVKRHAGHVIRKASES 594
            +  +G+ L    +L E+N+A NQ+  FK+LL L     LR L   D  +GDNPVC L NY+TYV +HL QL  LD   + EE K  A   ++KK MYYNMR + +KR+A ++IRKA+E+
Sbjct:  136 IRNLGNDLDNCVSLVELNIAGNQMWSFKDLLNLTRASSLRRLAFSDCDYGDNPVCDLCNYQTYVYFHLPQLQFLDTLPIPEEGKILAEATYMKKKMYYNMRIKTLKRNASNIIRKATEA 254          
BLAST of mRNA_Ecto-sp8_S_contig9531.31138.1 vs. uniprot
Match: A0A0M0JS56_9EUKA (Leucine-rich repeat-containing protein 9 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JS56_9EUKA)

HSP 1 Score: 109 bits (272), Expect = 5.440e-24
Identity = 49/121 (40.50%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  247 IGDGLPLGRTLREVNLAHNQLGCFKELLKLAPLEGLRSLTLQDIHFGDNPVCGLSNYKTYVAYHLTQLTSLDMEVVSEESKAFANTVFLKKSMYYNMRSRIVKRHAGHVIRKASESQRARF 609
            +GD L   + L ++NLA N L  FK++  L  +  L  + + + HFG+NP+C L NY+TYV +H+ QL  LD  +V++E +A A   ++KK MYYNMR + +KR+  +V+RKA+E ++ + 
Sbjct:  186 VGDALTCNQNLEDLNLAGNLLANFKDVPTLGRMRKLTKIAMSEPHFGENPLCSLCNYQTYVLFHMPQLQQLDSMLVTDELRALAEATYMKKKMYYNMRIKTLKRNTSNVLRKATEVRQTKI 306          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9531.31138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPT4_ECTSI1.090e-7998.46Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5L7J2_9PHAE1.500e-7994.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3G5L8_9EUKA7.540e-3145.83Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A2R5G831_9STRA3.960e-2650.85Leucine-rich repeat-containing protein 9 n=1 Tax=H... [more]
A0A7S1C613_9STRA1.250e-2545.53Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S1DL50_HEMAN1.350e-2543.90Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S4J9W0_GUITH1.430e-2545.13Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A7S0V6C4_9CRYP3.880e-2544.72Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0QTT4_9CRYP4.510e-2546.22Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A0M0JS56_9EUKA5.440e-2440.50Leucine-rich repeat-containing protein 9 n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9531contigEcto-sp8_S_contig9531:960..2232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score269.2
Seed ortholog evalue1.6e-69
Seed eggNOG ortholog2880.D7FPT4
Model size624
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
Cds size624
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145313.7399473-CDS-Ecto-sp8_S_contig9531:959..11361681145313.7399473-CDS-Ecto-sp8_S_contig9531:959..1136Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9531 960..1136 -
1681145313.753563-CDS-Ecto-sp8_S_contig9531:1400..16671681145313.753563-CDS-Ecto-sp8_S_contig9531:1400..1667Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9531 1401..1667 -
1681145313.7666953-CDS-Ecto-sp8_S_contig9531:2052..22321681145313.7666953-CDS-Ecto-sp8_S_contig9531:2052..2232Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9531 2053..2232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9531.31138.1prot_Ecto-sp8_S_contig9531.31138.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9531 960..2232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9531.31138.1

>prot_Ecto-sp8_S_contig9531.31138.1 ID=prot_Ecto-sp8_S_contig9531.31138.1|Name=mRNA_Ecto-sp8_S_contig9531.31138.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=208bp
VAGLESLNITECGLETTEGLEGLTGLTALHLSSNHLQSLDGVGGMTRLKK
LWANDNRIKSMDGLSSLGALEDLWLCRNRLTEIGDGLPLGRTLREVNLAH
NQLGCFKELLKLAPLEGLRSLTLQDIHFGDNPVCGLSNYKTYVAYHLTQL
TSLDMEVVSEESKAFANTVFLKKSMYYNMRSRIVKRHAGHVIRKASESQR
ARFVLRQ*
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mRNA from alignment at Ecto-sp8_S_contig9531:960..2232-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9531.31138.1 ID=mRNA_Ecto-sp8_S_contig9531.31138.1|Name=mRNA_Ecto-sp8_S_contig9531.31138.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1273bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9531:960..2232- (Ectocarpus species8 EcLAC_412)
GTTGCAGGTCTAGAAAGCCTCAACATCACCGAGTGCGGCCTAGAGACTAC GGAGGGACTGGAGGGTCTGACAGGCCTAACGGCCTTGCACCTGTCGAGCA ATCACCTGCAGTCTTTGGATGGGGTAGGGGGGATGACAAGGCTGAAGAAG CTGTGGGCTAACGATAACCGCATAAAGTCGGTGAGCGACCGCCCAGGGGA TAGATTCATGATCAAGGGTTAATCTGCGCCGCCGGTGGTGCGAGTCAGAA CAGGACGCACGGAAATATTGCTTGGGCGTTTTATTATGTGGCATGTGGCA CCAGATCAATATGTGGCATGCGGTAGCAGATGAGTATTGACCGGTTTAGC CTCGGTGTAACCAGTGGCGAGCGTGTGGACCTACGTCACGTCTGCGTGGA GGGCCGTCGAATGTGAGAGTGGACCGGCAATCTGGAACTTGTCGGGTGTT GTGATTCTTGTCAGGTTTATCAACCGCCATCCAGGTGACACACGGTTGCT CCCGCTCGTGTCTCCACGTTGTGCAACACCAACCTCCTTTTACAAACTCC AAAACGCACGCACAGATGGACGGGTTATCCTCTCTTGGGGCTCTCGAGGA CCTCTGGCTGTGCCGTAACCGGCTGACCGAAATTGGAGACGGCCTCCCCC TGGGCAGAACCCTGCGAGAGGTCAACCTCGCCCACAACCAACTGGGATGT TTCAAGGAGCTCCTTAAGCTCGCCCCGCTCGAAGGGCTGCGGAGCTTGAC GCTCCAGGACATCCACTTTGGCGACAACCCCGTGTGCGGGCTGTCCAACT ACAAGACCTACGTCGCGTACCATTTGACGCAGGTACGTATTTTGTGGCTC ACCCGGATGGGTATAGGACCGAGAGAGTTGGCGACTCTGAGACGACTGGG GGCACAGAAGCCGCTTCAGTACAGATGTATTGCGGTGTATTTATGCTCAA TTGTTCCAGCGATGCTTGCAATCTGTTGGGTGTGTCCCATCCAATCTGGT ACGTGTTTCTTGCGCGACAAACCGCTGCCGCAGGGTTTAGATTTTCGGTA AATATCGACGTACTTGCCCCCCTGTTATGGAAAAACCTGCTTGCAGTTGA CCTCGTTGGATATGGAGGTGGTCTCGGAGGAATCTAAGGCCTTCGCCAAC ACCGTCTTCCTCAAGAAGAGCATGTACTACAACATGCGATCGCGGATTGT GAAGAGGCACGCTGGGCACGTCATCCGAAAGGCGAGCGAATCTCAACGGG CACGCTTTGTCCTACGGCAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9531:960..2232-

>mRNA_Ecto-sp8_S_contig9531.31138.1 ID=mRNA_Ecto-sp8_S_contig9531.31138.1|Name=mRNA_Ecto-sp8_S_contig9531.31138.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9531:960..2232- (Ectocarpus species8 EcLAC_412)
GTTGCAGGTCTAGAAAGCCTCAACATCACCGAGTGCGGCCTAGAGACTAC
GGAGGGACTGGAGGGTCTGACAGGCCTAACGGCCTTGCACCTGTCGAGCA
ATCACCTGCAGTCTTTGGATGGGGTAGGGGGGATGACAAGGCTGAAGAAG
CTGTGGGCTAACGATAACCGCATAAAGTCGATGGACGGGTTATCCTCTCT
TGGGGCTCTCGAGGACCTCTGGCTGTGCCGTAACCGGCTGACCGAAATTG
GAGACGGCCTCCCCCTGGGCAGAACCCTGCGAGAGGTCAACCTCGCCCAC
AACCAACTGGGATGTTTCAAGGAGCTCCTTAAGCTCGCCCCGCTCGAAGG
GCTGCGGAGCTTGACGCTCCAGGACATCCACTTTGGCGACAACCCCGTGT
GCGGGCTGTCCAACTACAAGACCTACGTCGCGTACCATTTGACGCAGTTG
ACCTCGTTGGATATGGAGGTGGTCTCGGAGGAATCTAAGGCCTTCGCCAA
CACCGTCTTCCTCAAGAAGAGCATGTACTACAACATGCGATCGCGGATTG
TGAAGAGGCACGCTGGGCACGTCATCCGAAAGGCGAGCGAATCTCAACGG
GCACGCTTTGTCCTACGGCAGTAG
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