mRNA_Ecto-sp8_S_contig953.31136.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig953.31136.1
Unique NamemRNA_Ecto-sp8_S_contig953.31136.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig953.31136.1 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 5.740e-55
Identity = 103/109 (94.50%), Postives = 103/109 (94.50%), Query Frame = 1 
Query:   76 MDQSADPGEAKDGPETAESAAAAPELAGPVSEESAELYFLIANFLTNASQCSRAAAVLRQELREKNLLGTAYNWEGHARPASFDDVQRRHQALPADQLARVTAQYLRQQ 402
            MDQ  DPGEA DGPETAE AAA PELAGPVSEESAELYFLIANFLTNASQCSRAAA LRQELREKNLLGTAYNWEGHARPASFDDVQRRHQALPADQLARVTAQYLRQQ
Sbjct:    1 MDQLVDPGEAADGPETAEPAAATPELAGPVSEESAELYFLIANFLTNASQCSRAAAALRQELREKNLLGTAYNWEGHARPASFDDVQRRHQALPADQLARVTAQYLRQQ 109
[Close]
BLAST of mRNA_Ecto-sp8_S_contig953.31136.1 vs. uniprot
Match: A0A6G0XRZ7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRZ7_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.970e-12
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:  169 EESAELYFLIANFLTNASQCSRAAAVLRQELREKNLLGTAYNWEGHARPASFDDVQRRHQALP 357
            EE  ++YFLIA+FL  A+ CSRAAAVL +EL    LL T  NW+G  RPAS+ D+  RH+ LP
Sbjct:   55 EEMRDVYFLIADFLRRATPCSRAAAVLEEELNSLGLLHTTVNWQGQERPASYMDMHLRHRRLP 117
[Close]
BLAST of mRNA_Ecto-sp8_S_contig953.31136.1 vs. uniprot
Match: T0S0U0_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S0U0_SAPDV)

HSP 1 Score: 70.1 bits (170), Expect = 3.190e-11
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:  160 PVSEESAELYFLIANFLTNASQCSRAAAVLRQELREKNLLGTAYNWEGHARPASFDDVQRRHQALPADQLARV 378
            P   +  ++YFLIANFL  A+ CSR AA+L +EL    LL  A +W+G  RPA++ DV  RH+ LP   L ++
Sbjct:   56 PGPSDMGDVYFLIANFLRQATPCSRTAAMLEEELHSLGLLDAAVDWQGRERPATYTDVHLRHRQLPPTHLVQL 128
[Close]
BLAST of mRNA_Ecto-sp8_S_contig953.31136.1 vs. uniprot
Match: A0A4U1F0V3_MONMO (Uncharacterized protein (Fragment) n=1 Tax=Monodon monoceros TaxID=40151 RepID=A0A4U1F0V3_MONMO)

HSP 1 Score: 50.1 bits (118), Expect = 3.290e-5
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:  160 PVSEESAELYFLIANFLTNASQCSRAAAVLRQELREKNLLGTAYNWEGHARPASFDDVQR 339
            P+    AELYFLIA +L+ A  C RAA VL QEL +  LL    +WEG+    S++++ R
Sbjct:   41 PIPRLPAELYFLIARYLS-AGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNRSYEELVR 99
[Close]
BLAST of mRNA_Ecto-sp8_S_contig953.31136.1 vs. uniprot
Match: A0A8D0L8D1_SPHPU (Uncharacterized protein n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0L8D1_SPHPU)

HSP 1 Score: 50.8 bits (120), Expect = 6.060e-5
Identity = 31/78 (39.74%), Postives = 42/78 (53.85%), Query Frame = 1 
Query:  145 PELAGPVSEESAELYFLIANFLTNASQCSRAAAVLRQELREKNLLGTAYNWEGHARPASFDDVQRRHQALPADQLARV 378
            P L   +S   AELYFLIA FLT    C  AA VL  EL +  LL    +WEG+    S++D+   +Q +  D L ++
Sbjct:   63 PTLVSCLSPSLAELYFLIARFLTTGP-CRSAAEVLVHELEQHQLLPKRLDWEGNEHYRSYEDLVLSNQHVAPDHLLQI 139
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig953.31136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LEP1_ECTSI5.740e-5594.50WD-repeat protein, putative n=1 Tax=Ectocarpus sil... [more]
A0A6G0XRZ7_9STRA1.970e-1255.56Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
T0S0U0_SAPDV3.190e-1145.21Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A4U1F0V3_MONMO3.290e-545.00Uncharacterized protein (Fragment) n=1 Tax=Monodon... [more]
A0A8D0L8D1_SPHPU6.060e-539.74Uncharacterized protein n=1 Tax=Sphenodon punctatu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig953contigEcto-sp8_S_contig953:15833..16622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score196.4
Seed ortholog evalue8.8e-48
Seed eggNOG ortholog2880.D8LEP1
Model size431
KEGG koko:K02606,ko:K11797,ko:K11798
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Exons2
EggNOG free text desc.regulation of cell shape
EggNOG OGsCOG2319@1,COG5141@1,KOG0644@2759,KOG0955@2759
Cds size429
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145313.5699568-CDS-Ecto-sp8_S_contig953:15832..160931681145313.5699568-CDS-Ecto-sp8_S_contig953:15832..16093Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig953 15833..16093 +
1681145313.588008-CDS-Ecto-sp8_S_contig953:16453..166211681145313.588008-CDS-Ecto-sp8_S_contig953:16453..16621Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig953 16454..16621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig953.31136.1prot_Ecto-sp8_S_contig953.31136.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig953 15833..16621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig953.31136.1

>prot_Ecto-sp8_S_contig953.31136.1 ID=prot_Ecto-sp8_S_contig953.31136.1|Name=mRNA_Ecto-sp8_S_contig953.31136.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=143bp
ERVLSAVSLSLCSSGVKQKEPPIASMDQSADPGEAKDGPETAESAAAAPE
LAGPVSEESAELYFLIANFLTNASQCSRAAAVLRQELREKNLLGTAYNWE
GHARPASFDDVQRRHQALPADQLARVTAQYLRQQQAVAAATDT
back to top

mRNA from alignment at Ecto-sp8_S_contig953:15833..16622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig953.31136.1 ID=mRNA_Ecto-sp8_S_contig953.31136.1|Name=mRNA_Ecto-sp8_S_contig953.31136.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=790bp|location=Sequence derived from alignment at Ecto-sp8_S_contig953:15833..16622+ (Ectocarpus species8 EcLAC_412)
GAGAGAGTGCTCAGTGCTGTGTCGCTCTCGCTCTGCTCCTCAGGTGTAAA
GCAGAAAGAGCCACCAATCGCAAGCATGGATCAGTCAGCGGATCCCGGCG
AGGCGAAAGATGGACCAGAAACGGCGGAGTCAGCCGCAGCTGCGCCGGAA
CTGGCGGGCCCGGTGTCGGAGGAGTCGGCGGAGCTCTACTTCTTGATCGC
TAACTTCCTCACTAACGCCTCCCAGTGTTCTCGCGCGGCGGCGGTGCTAC
GGCAAGAGCTGGTACGGTTCGAGACTAGCTCTGCGCTGCTGCTGTGAAAC
ATGGGCACACTGGACCTATGCCCGTTTGCTTGTTGATGTGTGATTGGCGC
TCGTCAGCTGTTGCGTGTGGAACATACTCCAGTACACCATATGGCGGTTT
TGCCCCACCACCCCCATCCTCCGCGTTCGTTTTCAAAAATTGGGGCATGC
CTTCAACACAACTCGGTGAACGGCCTAAAATAGATGTACATACATCCAGC
CATCTTTCCCAAATTGCGCTTGGGCCGCCTGACATCCATCTGTCCCTCCC
CCGCTTCGACGGCTCCCGTGTGGCCGGCGGCCCCTTTATCTCGTGCGTTT
GTTTGCCTCCTTCTCTGCCAGCGAGAGAAAAACCTTCTGGGTACTGCCTA
CAACTGGGAAGGCCACGCCCGACCCGCGAGCTTCGACGACGTCCAGCGGC
GACACCAGGCCTTGCCCGCCGACCAACTGGCTCGGGTAACGGCGCAATAC
CTGCGGCAGCAACAAGCGGTTGCTGCTGCGACGGATACCA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig953:15833..16622+

>mRNA_Ecto-sp8_S_contig953.31136.1 ID=mRNA_Ecto-sp8_S_contig953.31136.1|Name=mRNA_Ecto-sp8_S_contig953.31136.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp8_S_contig953:15833..16622+ (Ectocarpus species8 EcLAC_412)
GAGAGAGTGCTCAGTGCTGTGTCGCTCTCGCTCTGCTCCTCAGGTGTAAA
GCAGAAAGAGCCACCAATCGCAAGCATGGATCAGTCAGCGGATCCCGGCG
AGGCGAAAGATGGACCAGAAACGGCGGAGTCAGCCGCAGCTGCGCCGGAA
CTGGCGGGCCCGGTGTCGGAGGAGTCGGCGGAGCTCTACTTCTTGATCGC
TAACTTCCTCACTAACGCCTCCCAGTGTTCTCGCGCGGCGGCGGTGCTAC
GGCAAGAGCTGCGAGAGAAAAACCTTCTGGGTACTGCCTACAACTGGGAA
GGCCACGCCCGACCCGCGAGCTTCGACGACGTCCAGCGGCGACACCAGGC
CTTGCCCGCCGACCAACTGGCTCGGGTAACGGCGCAATACCTGCGGCAGC
AACAAGCGGTTGCTGCTGCGACGGATACC
back to top