mRNA_Ecto-sp8_S_contig9528.31132.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9528.31132.1
Unique NamemRNA_Ecto-sp8_S_contig9528.31132.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9528.31132.1 vs. uniprot
Match: D7G4V3_ECTSI (Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4V3_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 1.700e-46
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:    1 PVRICLDRDVDMQITGHRHAFLAKYKAGATKDGELVGMDVTLYNNAGCSLELSSAVMDRALFSIDNCYSWPALRVKGLVCKT 246
            PVRICLDRDVDMQITGHRHAFLAKYKAGATKDG+LVGM VTLYNNAGCSLELSSAVMDRALFSIDNCYSWPALRVKGLVCKT
Sbjct:  976 PVRICLDRDVDMQITGHRHAFLAKYKAGATKDGKLVGMGVTLYNNAGCSLELSSAVMDRALFSIDNCYSWPALRVKGLVCKT 1057
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9528.31132.1 vs. uniprot
Match: A0A6H5JW60_9PHAE (Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW60_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 3.440e-46
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:    1 PVRICLDRDVDMQITGHRHAFLAKYKAGATKDGELVGMDVTLYNNAGCSLELSSAVMDRALFSIDNCYSWPALRVKGLVCKT 246
            PVRICLDRDVDMQITGHRHAFLAKYKAGATKDG+LVGMDVTLYNNAGCSL+LSS+VMDRALF IDNCYSWPALR KGLVCKT
Sbjct:   88 PVRICLDRDVDMQITGHRHAFLAKYKAGATKDGKLVGMDVTLYNNAGCSLDLSSSVMDRALFHIDNCYSWPALRAKGLVCKT 169
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BLAST of mRNA_Ecto-sp8_S_contig9528.31132.1 vs. uniprot
Match: A0A7S1XKA7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKA7_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.150e-29
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    1 PVRICLDRDVDMQITGHRHAFLAKYKAGATKDGELVGMDVTLYNNAGCSLELSSAVMDRALFSIDNCYSWPALRVKGLVCKT 246
            PVRI LDRDVDMQ TG RHAF A+Y AGA  DG L    V +YNNAGCSL+LS+AVMDRALF +DN Y WPA+R  G +C+T
Sbjct:  202 PVRIMLDRDVDMQTTGQRHAFHARYTAGAAADGTLKFFKVDVYNNAGCSLDLSAAVMDRALFHLDNAYQWPAVRAAGYLCRT 283
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BLAST of mRNA_Ecto-sp8_S_contig9528.31132.1 vs. uniprot
Match: A0A7S1XKK2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKK2_9STRA)

HSP 1 Score: 117 bits (293), Expect = 7.610e-29
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    1 PVRICLDRDVDMQITGHRHAFLAKYKAGATKDGELVGMDVTLYNNAGCSLELSSAVMDRALFSIDNCYSWPALRVKGLVCKT 246
            PVRI LDRDVDMQ TG RHAF A+Y AGA  DG L    V +YNNAGCSL+LS+AVMDRALF +DN Y WPA+R  G +C+T
Sbjct:  202 PVRIMLDRDVDMQTTGQRHAFHARYTAGAAADGTLKFFKVDVYNNAGCSLDLSAAVMDRALFHLDNAYQWPAVRAAGYLCRT 283
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9528.31132.1 vs. uniprot
Match: A0A7R9U4K0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4K0_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.790e-28
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    1 PVRICLDRDVDMQITGHRHAFLAKYKAGATKDGELVGMDVTLYNNAGCSLELSSAVMDRALFSIDNCYSWPALRVKGLVCKT 246
            P+RI LDRDVDMQ TG RHAF AKY+AGA  +G L  + V +YNNAGCSL+LS+AVMDRALF +DN Y W AL   G VC+T
Sbjct:  733 PIRIMLDRDVDMQCTGQRHAFYAKYRAGADSEGNLRFLKVDVYNNAGCSLDLSAAVMDRALFHLDNAYQWRALCASGYVCRT 814
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9528.31132.1 vs. uniprot
Match: W7TFQ7_9STRA (Xanthine dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFQ7_9STRA)

HSP 1 Score: 114 bits (285), Expect = 9.660e-28
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 1 
Query:    1 PVRICLDRDVDMQITGHRHAFLAKYKAGATKDGELVGMDVTLYNNAGCSLELSSAVMDRALFSIDNCYSWPALRVKGLVCKT 246
            PVRI LDRDVDM ITG RHAFLA+YKA A  DG+L+ ++V L+NN G SL+LS  V DRALF +DNCY WP+LR +G + +T
Sbjct:  941 PVRISLDRDVDMHITGQRHAFLARYKAAAGMDGKLLALNVELFNNGGFSLDLSGPVADRALFHVDNCYRWPSLRARGRIVRT 1022
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BLAST of mRNA_Ecto-sp8_S_contig9528.31132.1 vs. uniprot
Match: A0A836C8N1_9STRA (Xanthine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N1_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.800e-27
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:    1 PVRICLDRDVDMQITGHRHAFLAKYKAGATKDGELVGMDVTLYNNAGCSLELSSAVMDRALFSIDNCYSWPALRVKGLVCKT 246
            PV I LDRDVDMQ TG RHAF AKYKAGA+K+G+L  + V +YNNAGCSL+LS++VMDRALF +D  Y W  +RV+G V +T
Sbjct:  859 PVNIMLDRDVDMQTTGQRHAFTAKYKAGASKEGKLEALIVDIYNNAGCSLDLSASVMDRALFHLDGVYKWSHVRVRGHVART 940
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BLAST of mRNA_Ecto-sp8_S_contig9528.31132.1 vs. uniprot
Match: A0A7S2RHM1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHM1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.050e-27
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:    1 PVRICLDRDVDMQITGHRHAFLAKYKAGATKD-GELVGMDVTLYNNAGCSLELSSAVMDRALFSIDNCYSWPALRVKGLVCKT 246
            PV+ICLDRDVDM ITG RH FL +Y+A A +  G L+ +D  +++N GCSL+LS  V+DRALF IDNCY WPALRV G +C+T
Sbjct:   84 PVKICLDRDVDMSITGQRHPFLCRYEAAADRSTGRLLYLDARIWSNGGCSLDLSLPVLDRALFHIDNCYRWPALRVSGRICRT 166
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9528.31132.1 vs. uniprot
Match: A0A8J5XAY3_DIALT (Uncharacterized protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XAY3_DIALT)

HSP 1 Score: 111 bits (278), Expect = 8.530e-27
Identity = 52/93 (55.91%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:    1 PVRICLDRDVDMQITGHRHAFLAKYKA-----------GATKDGELVGMDVTLYNNAGCSLELSSAVMDRALFSIDNCYSWPALRVKGLVCKT 246
            PVR+ L+RDVDMQI+G RHAFLAKY+A           G+T   +L+ +DV L++N GC+L+LS  VMDRA+F +D+CY WPALRV+G VC+T
Sbjct:  963 PVRLSLERDVDMQISGQRHAFLAKYRAAVLPASSAAADGSTPPPKLLALDVQLFSNGGCALDLSGPVMDRAIFHLDSCYKWPALRVRGRVCRT 1055
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9528.31132.1 vs. uniprot
Match: A0A5B8MMF7_9CHLO (Xanthine dehydrogenase n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MMF7_9CHLO)

HSP 1 Score: 110 bits (276), Expect = 1.590e-26
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    1 PVRICLDRDVDMQITGHRHAFLAKYKAGATKDGELVGMDVTLYNNAGCSLELSSAVMDRALFSIDNCYSWPALRVKGLVCKT 246
            PVR+CLDRD DMQITGHRHAF  KYK G    GE++ +D+ +YNN G SL+LS+AVM RA+   DNCY++P  R  G +CKT
Sbjct:  845 PVRLCLDRDEDMQITGHRHAFYGKYKVGFNDKGEILAVDLKIYNNGGNSLDLSAAVMQRAVLHADNCYNYPNARFHGRICKT 926
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9528.31132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4V3_ECTSI1.700e-4697.56Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=28... [more]
A0A6H5JW60_9PHAE3.440e-4693.90Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Ec... [more]
A0A7S1XKA7_9STRA1.150e-2967.07Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1XKK2_9STRA7.610e-2967.07Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9U4K0_9STRA3.790e-2865.85Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TFQ7_9STRA9.660e-2863.41Xanthine dehydrogenase n=2 Tax=Monodopsidaceae Tax... [more]
A0A836C8N1_9STRA1.800e-2764.63Xanthine dehydrogenase n=1 Tax=Tribonema minus Tax... [more]
A0A7S2RHM1_9STRA2.050e-2761.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J5XAY3_DIALT8.530e-2755.91Uncharacterized protein n=3 Tax=Diacronema lutheri... [more]
A0A5B8MMF7_9CHLO1.590e-2659.76Xanthine dehydrogenase n=2 Tax=Chloropicon primus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9528contigEcto-sp8_S_contig9528:5809..6626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score169.5
Seed ortholog evalue6.6e-40
Seed eggNOG ortholog2880.D7G4V3
Model size250
KEGG rclassRC00143,RC02017,RC02199
KEGG koko:K00106
KEGG ReactionR01768,R01769,R02103,R02107,R07942,R07977,R07978,R07979,R08235
KEGG Pathwayko00230,ko00232,ko00983,ko01100,ko01110,ko01120,ko04146,map00230,map00232,map00983,map01100,map01110,map01120,map04146
KEGG ModuleM00546
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004854,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009115,GO:0009987,GO:0016491,GO:0016725,GO:0016726,GO:0016903,GO:0019439,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043546,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046110,GO:0046113,GO:0046483,GO:0046700,GO:0048037,GO:0050660,GO:0050662,GO:0051536,GO:0051537,GO:0051540,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575
Exons3
EggNOG free text desc.Xanthine dehydrogenase
EggNOG OGsCOG4631@1,KOG0430@2759
EC1.17.1.4,1.17.3.2
Cds size246
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145313.270929-CDS-Ecto-sp8_S_contig9528:5808..59001681145313.270929-CDS-Ecto-sp8_S_contig9528:5808..5900Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9528 5809..5900 +
1681145313.286125-CDS-Ecto-sp8_S_contig9528:6244..63581681145313.286125-CDS-Ecto-sp8_S_contig9528:6244..6358Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9528 6245..6358 +
1681145313.297383-CDS-Ecto-sp8_S_contig9528:6584..66241681145313.297383-CDS-Ecto-sp8_S_contig9528:6584..6624Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9528 6585..6624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9528.31132.1prot_Ecto-sp8_S_contig9528.31132.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9528 5809..6624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9528.31132.1

>prot_Ecto-sp8_S_contig9528.31132.1 ID=prot_Ecto-sp8_S_contig9528.31132.1|Name=mRNA_Ecto-sp8_S_contig9528.31132.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=82bp
PVRICLDRDVDMQITGHRHAFLAKYKAGATKDGELVGMDVTLYNNAGCSL
ELSSAVMDRALFSIDNCYSWPALRVKGLVCKT
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mRNA from alignment at Ecto-sp8_S_contig9528:5809..6626+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9528.31132.1 ID=mRNA_Ecto-sp8_S_contig9528.31132.1|Name=mRNA_Ecto-sp8_S_contig9528.31132.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=818bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9528:5809..6626+ (Ectocarpus species8 EcLAC_412)
CCCGTGAGGATCTGTCTTGACAGGGACGTGGACATGCAGATCACCGGACA
CCGACACGCCTTCCTCGCCAAGTACAAGGCCGGCGCCACAAAGTGAGGTT
CTAACAGACTTTCGGAAATCTGCTTGTTGTAATTTTTTTATTACGATTCA
CGGGTTTTCGACCATGCCTAGCATCCTCTTCGGCCGTGGCAGAAAGGTCC
GAGCGTGTCGAACGATCTTGTATCACCCGATTTTGTCGGTTTGGCGTTGG
CGTCTTTTGATGCGATTGGCCTCCAGCCAAACGGCCTGGCACATTCAGTT
TCTGATTATCACATACAATTGAGGTTGGAAAAGAAGTTCCGCGTACTCCG
TTTTTGTGACGCAACGCAACACGAGCGTCCTGAGTGTTCCCACTTGTCGT
ACGCATGTCGTGTTTCTCATTGCCTTGACGGCTCAGGGATGGCGAACTAG
TCGGCATGGACGTAACGCTGTACAACAACGCTGGCTGCAGCCTGGAACTG
TCCTCTGCTGTCATGGACAGGGCTCTCTTCAGTATCGACAACTGCTACAG
GTCAGGCTGACGATGCTCGCGTTGTCGTTGCCTTGTCCCTGTCGTCCTAG
TCGTTTGTTATCGCGGTGTTGTACAGTAGTTGTGGAAATTAGCGGCGCTC
ACCTGTTACCCACTTTATTGGCACACTTTTCTATTTTTTCAACTCGATCG
CGTCCGTCAGCCTCCTTCAGATCCATGGATTCACTCTTGGTGTGTTTTTT
CGTTTTTTCGCTGTGTGCATTAACAGCTGGCCGGCTCTGCGCGTGAAGGG
GTTGGTCTGCAAGACAAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9528:5809..6626+

>mRNA_Ecto-sp8_S_contig9528.31132.1 ID=mRNA_Ecto-sp8_S_contig9528.31132.1|Name=mRNA_Ecto-sp8_S_contig9528.31132.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9528:5809..6626+ (Ectocarpus species8 EcLAC_412)
CCCGTGAGGATCTGTCTTGACAGGGACGTGGACATGCAGATCACCGGACA
CCGACACGCCTTCCTCGCCAAGTACAAGGCCGGCGCCACAAAGGATGGCG
AACTAGTCGGCATGGACGTAACGCTGTACAACAACGCTGGCTGCAGCCTG
GAACTGTCCTCTGCTGTCATGGACAGGGCTCTCTTCAGTATCGACAACTG
CTACAGCTGGCCGGCTCTGCGCGTGAAGGGGTTGGTCTGCAAGACA
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