mRNA_Ecto-sp8_S_contig95267.31127.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig95267.31127.1
Unique NamemRNA_Ecto-sp8_S_contig95267.31127.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig95267.31127.1 vs. uniprot
Match: A0A6H5L593_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L593_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.430e-17
Identity = 69/80 (86.25%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:    1 SRTKARPTGTDPARRGSHPPXXXXXXXXXXXXXXXXXXXXXXXXXXXSANSRSPPILVELSAVTGPSSRAKPHHRHRGRE 240
            SRT ARPTGTDPARRGSHPPXXXXXXXXXXXXXXXXXXXXX      SANSRSPPIL ELSAV+GPSSRAKP  RHRGRE
Sbjct:  757 SRTNARPTGTDPARRGSHPPXXXXXXXXXXXXXXXXXXXXXSGSVNASANSRSPPILAELSAVSGPSSRAKPRRRHRGRE 836
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig95267.31127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L593_9PHAE2.430e-1786.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig95267contigEcto-sp8_S_contig95267:174..514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size341
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145312.9701967-CDS-Ecto-sp8_S_contig95267:173..5121681145312.9701967-CDS-Ecto-sp8_S_contig95267:173..512Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95267 174..512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig95267.31127.1prot_Ecto-sp8_S_contig95267.31127.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig95267 174..512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig95267.31127.1

>prot_Ecto-sp8_S_contig95267.31127.1 ID=prot_Ecto-sp8_S_contig95267.31127.1|Name=mRNA_Ecto-sp8_S_contig95267.31127.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=113bp
SRTKARPTGTDPARRGSHPPPPPADAHEARRSSSSARSGSGSGSVDASAN
SRSPPILVELSAVTGPSSRAKPHHRHRGREERGSKRAAAGVAGGGGGGGS
RSGPSRSSSDRKR
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mRNA from alignment at Ecto-sp8_S_contig95267:174..514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig95267.31127.1 ID=mRNA_Ecto-sp8_S_contig95267.31127.1|Name=mRNA_Ecto-sp8_S_contig95267.31127.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=341bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95267:174..514+ (Ectocarpus species8 EcLAC_412)
TCTCGCACGAAGGCCAGGCCTACCGGCACCGATCCGGCCCGGCGAGGCTC
CCATCCGCCGCCGCCGCCGGCCGACGCACATGAAGCGCGGCGTTCGTCGT
CGTCGGCTCGCAGCGGCAGCGGCAGCGGCAGCGTCGACGCCTCCGCCAAT
AGCAGAAGCCCCCCGATTCTTGTGGAGCTTTCCGCAGTAACGGGCCCGTC
TTCCCGCGCGAAGCCCCATCACCGCCACCGGGGGCGAGAGGAGCGGGGGT
CGAAGCGCGCCGCCGCCGGTGTCGCTGGCGGCGGCGGCGGCGGCGGCAGC
CGCAGCGGCCCTAGCCGCAGCAGCAGCGACCGCAAGAGAGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig95267:174..514+

>mRNA_Ecto-sp8_S_contig95267.31127.1 ID=mRNA_Ecto-sp8_S_contig95267.31127.1|Name=mRNA_Ecto-sp8_S_contig95267.31127.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95267:174..514+ (Ectocarpus species8 EcLAC_412)
TCTCGCACGAAGGCCAGGCCTACCGGCACCGATCCGGCCCGGCGAGGCTC
CCATCCGCCGCCGCCGCCGGCCGACGCACATGAAGCGCGGCGTTCGTCGT
CGTCGGCTCGCAGCGGCAGCGGCAGCGGCAGCGTCGACGCCTCCGCCAAT
AGCAGAAGCCCCCCGATTCTTGTGGAGCTTTCCGCAGTAACGGGCCCGTC
TTCCCGCGCGAAGCCCCATCACCGCCACCGGGGGCGAGAGGAGCGGGGGT
CGAAGCGCGCCGCCGCCGGTGTCGCTGGCGGCGGCGGCGGCGGCGGCAGC
CGCAGCGGCCCTAGCCGCAGCAGCAGCGACCGCAAGAGA
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