mRNA_Ecto-sp8_S_contig95237.31121.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig95237.31121.1
Unique NamemRNA_Ecto-sp8_S_contig95237.31121.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig95237.31121.1 vs. uniprot
Match: D7FRY4_ECTSI (ThiC-associated domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRY4_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 8.110e-87
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 1
Query:    1 GRVKRTTDPYNPDFHEVASFGDAYPESTKNYQEIVHAETGHKMKVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRGEWVKRREDSGDEVFTQMHYAKKGIITEEMAYCAAREGMDPEFVR 384
            GRVKRTTDPYNPDFHEVASFGDAYPESTK YQEIVHAETGHKMKVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRGEWVKRREDSGDEVFTQMHYAKKGIITEEMAYCAAREGMDPEFVR
Sbjct:   66 GRVKRTTDPYNPDFHEVASFGDAYPESTKRYQEIVHAETGHKMKVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRGEWVKRREDSGDEVFTQMHYAKKGIITEEMAYCAAREGMDPEFVR 193          
BLAST of mRNA_Ecto-sp8_S_contig95237.31121.1 vs. uniprot
Match: A0A835Z789_9STRA (ThiC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z789_9STRA)

HSP 1 Score: 210 bits (534), Expect = 2.620e-62
Identity = 95/128 (74.22%), Postives = 106/128 (82.81%), Query Frame = 1
Query:    1 GRVKRTTDPYNPDFHEVASFGDAYPESTKNYQEIVHAETGHKMKVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRGEWVKRREDSGDEVFTQMHYAKKGIITEEMAYCAAREGMDPEFVR 384
            GRVK T DPYNP F   A FG AYP STK YQE++H ETG  ++VPFRRIHL+DPDPGCSH+DVYDT+GPLG DP+ GLP +R  WVKRRE+ GDE FTQMHYAK+GIITEEMAY AAREGMD EFVR
Sbjct:   65 GRVKPTKDPYNPQFRSAADFGVAYPSSTKEYQEVIHEETGTLLRVPFRRIHLTDPDPGCSHIDVYDTSGPLGYDPKYGLPKLREAWVKRREERGDERFTQMHYAKRGIITEEMAYVAAREGMDAEFVR 192          
BLAST of mRNA_Ecto-sp8_S_contig95237.31121.1 vs. uniprot
Match: A0A6T5LU33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5LU33_HETAK)

HSP 1 Score: 200 bits (508), Expect = 1.240e-58
Identity = 87/123 (70.73%), Postives = 104/123 (84.55%), Query Frame = 1
Query:   16 TTDPYNPDFHEVASFGDAYPESTKNYQEIVHAETGHKMKVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRGEWVKRREDSGDEVFTQMHYAKKGIITEEMAYCAAREGMDPEFVR 384
            T DP+NP+F E  SFG+AYP STK Y+E+VH ETG  ++VPFRRIHL+D DPGC HLDVYDT+GP G  PR+G+P +R EW+KRRE+ GDE +TQM+YAKKGI+TEEMAY AAREGMDPEFVR
Sbjct:   60 TKDPFNPEFRETTSFGEAYPSSTKEYKEVVHEETGALLRVPFRRIHLTDEDPGCGHLDVYDTSGPQGFSPREGIPKLREEWIKRREERGDERYTQMYYAKKGIVTEEMAYVAAREGMDPEFVR 182          
BLAST of mRNA_Ecto-sp8_S_contig95237.31121.1 vs. uniprot
Match: A0A1Q9EQ11_SYMMI (Phosphomethylpyrimidine synthase, chloroplastic n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EQ11_SYMMI)

HSP 1 Score: 181 bits (459), Expect = 1.840e-51
Identity = 80/128 (62.50%), Postives = 102/128 (79.69%), Query Frame = 1
Query:    1 GRVKRTTDPYNPDFHEVASFGDAYPESTKNYQEIVHAETGHKMKVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRGEWVKRREDSGDEVFTQMHYAKKGIITEEMAYCAAREGMDPEFVR 384
            GR + T+DPYNP+F +   F +AYP S K Y+E+V+  TG K+K+PFRRIHL+D DPGC HLDVYDT+GP GADPRKGL  +R +W++ RE + D   TQM+YAK+G+IT+EMA+ AAREGMDPEFVR
Sbjct:   65 GRSRPTSDPYNPEFKDAFQFKEAYPSSEKIYKEVVYEATGEKLKIPFRRIHLTDEDPGCDHLDVYDTSGPPGADPRKGLAKLRKKWIEGREVAEDGTCTQMYYAKQGVITQEMAFIAAREGMDPEFVR 192          
BLAST of mRNA_Ecto-sp8_S_contig95237.31121.1 vs. uniprot
Match: A0A7S4VML7_9DINO (Hypothetical protein n=3 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4VML7_9DINO)

HSP 1 Score: 180 bits (457), Expect = 5.650e-51
Identity = 84/130 (64.62%), Postives = 97/130 (74.62%), Query Frame = 1
Query:    1 GRVKRTTDPYNPDFHEVASFGDAYPESTKNYQEIVHAETGHKMKVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRGEWVKRRE--DSGDEVFTQMHYAKKGIITEEMAYCAAREGMDPEFVR 384
            GR K T+DPYNP F +V  F +AYP S K Y+E+ H  TG  ++VPFRRIHLSD DPGC HLDVYDT+GPLG  PR+GLP +R  WV  RE  D      TQMHYAK+GI+TEEMA+ AAREGMDPEFVR
Sbjct:  103 GRTKPTSDPYNPQFRDVLQFQEAYPNSEKLYREVTHTPTGETLQVPFRRIHLSDEDPGCGHLDVYDTSGPLGVIPREGLPKLRKAWVAAREAADGPGARCTQMHYAKRGIVTEEMAFVAAREGMDPEFVR 232          
BLAST of mRNA_Ecto-sp8_S_contig95237.31121.1 vs. uniprot
Match: A0A4D9D219_9STRA (ThiC-associated domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D219_9STRA)

HSP 1 Score: 177 bits (449), Expect = 3.460e-50
Identity = 81/127 (63.78%), Postives = 94/127 (74.02%), Query Frame = 1
Query:    1 GRVKRTTDPYNPDFHEVASFGDAYPESTKNYQEIVHAETGHKMKVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRGEWVKRREDSGDEVFTQMHYAKKGIITEEMAYCAAREGMDPEFV 381
            GR K T DPYNPDF    +F +AYP+ TK Y  + H  TG  M VPFRRIHL+D DPGC HLD+YDT+GP G +PR+GLP +R  WV RRE  GD   TQM YAK+GI+TEEMAY AAREGMDP+FV
Sbjct:   35 GRSKPTKDPYNPDFIRPLTFEEAYPKCTKEYIPVTHEGTGEVMSVPFRRIHLADTDPGCEHLDLYDTSGPQGVNPREGLPKLRKSWVGRREQKGDATPTQMWYAKQGIVTEEMAYVAAREGMDPQFV 161          
BLAST of mRNA_Ecto-sp8_S_contig95237.31121.1 vs. uniprot
Match: A0A7S2QJG1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QJG1_9DINO)

HSP 1 Score: 159 bits (402), Expect = 1.910e-47
Identity = 73/121 (60.33%), Postives = 91/121 (75.21%), Query Frame = 1
Query:   28 YNPDFHEVASFGDAYPESTKNYQEIVHAETGHKMKVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRGEWVKRREDSGDE--VFTQMHYAKKGIITEEMAYCAAREGMDPEFVR 384
            YNP F ++  F +AYP S K Y+ + +  TG  +++P RRI+LSD DPGC HLDVYDT+GPL  DPR+GLP +R +W+  RE +  E  V TQMHYAK+GIITEEMA+ AAREGMDPEFVR
Sbjct:    1 YNPQFKDMLQFKEAYPGSEKIYKGVTYEPTGETLRIPCRRINLSDEDPGCDHLDVYDTSGPLNIDPRQGLPKLRAQWIAAREKTFGEGHVCTQMHYAKQGIITEEMAFIAAREGMDPEFVR 121          
BLAST of mRNA_Ecto-sp8_S_contig95237.31121.1 vs. uniprot
Match: A0A813D6A3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813D6A3_POLGL)

HSP 1 Score: 163 bits (413), Expect = 2.020e-47
Identity = 73/130 (56.15%), Postives = 94/130 (72.31%), Query Frame = 1
Query:    7 VKRTTDPYNPDFHEVASFGDAYPESTKNYQEIVHAETGHKMKVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRGEWVKRREDSGDE----VFTQMHYAKKGIITEEMAYCAAREGMDPEFVR 384
            V+ ++DPYNP+F   A F +AYP S K Y E+ +  TG  ++VPFRR+HL+D  PG  HLD+YDT+GPLG DPR G+P +R +WV  R D   E      TQMHYAK+G+IT+EMA+ AAREGM+PEFVR
Sbjct:  107 VRPSSDPYNPNFRSAAQFAEAYPSSEKMYHEVSYEPTGEVLQVPFRRVHLTDKTPGFEHLDLYDTSGPLGCDPRHGIPKLRAQWVAARSDQLGEGSGAAVTQMHYAKRGLITQEMAFVAAREGMEPEFVR 236          
BLAST of mRNA_Ecto-sp8_S_contig95237.31121.1 vs. uniprot
Match: A0A7S2VR37_9DINO (Hypothetical protein n=2 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VR37_9DINO)

HSP 1 Score: 170 bits (430), Expect = 3.190e-47
Identity = 76/129 (58.91%), Postives = 96/129 (74.42%), Query Frame = 1
Query:    4 RVKRTTDPYNPDFHEVASFGDAYPESTKNYQEIVHAETGHKMKVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRGEWVKRREDSGDEVF--TQMHYAKKGIITEEMAYCAAREGMDPEFVR 384
            R K T+DPYNP F ++  F +AYP S K Y+++ +  TG  +++PFRRIHLSD DPGC HLDVYDT+GPL  DPR+GLP +R  W+  RE    E    TQMHYAK+G++T+EMA+ AAREGMDPEFVR
Sbjct:   79 RSKPTSDPYNPQFKDMLQFKEAYPGSEKLYKDVTYEPTGETLRIPFRRIHLSDEDPGCGHLDVYDTSGPLNVDPRQGLPKLRAPWIAAREAEFGEGHRCTQMHYAKQGVVTQEMAFIAAREGMDPEFVR 207          
BLAST of mRNA_Ecto-sp8_S_contig95237.31121.1 vs. uniprot
Match: A0A7S3TGH3_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TGH3_9SPIT)

HSP 1 Score: 167 bits (422), Expect = 4.800e-46
Identity = 75/129 (58.14%), Postives = 98/129 (75.97%), Query Frame = 1
Query:    4 RVKRTTDPYNPDFHEVASFGDAYPESTKNYQEIVHAETGHKMKVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRGEWVKRRE--DSGDEVFTQMHYAKKGIITEEMAYCAAREGMDPEFVR 384
            R + T+DPYNP F ++ +F +A+P+S K Y+E+VH  TG  ++VP RRIHL D D GC HLDVYDT+GPL  DPR+G P +R +W++ RE  D   +  TQM+YAK+GIITEEM++ AAREGMDPEFVR
Sbjct:   86 RSRPTSDPYNPQFKDMVNFQEAFPKSEKFYKEVVHEPTGEVLRVPCRRIHLDDEDEGCGHLDVYDTSGPLNIDPREGQPKLRAKWIEAREARDGAGQRCTQMYYAKRGIITEEMSFIAAREGMDPEFVR 214          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig95237.31121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRY4_ECTSI8.110e-8799.22ThiC-associated domain-containing protein n=2 Tax=... [more]
A0A835Z789_9STRA2.620e-6274.22ThiC family-domain-containing protein n=1 Tax=Trib... [more]
A0A6T5LU33_HETAK1.240e-5870.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Q9EQ11_SYMMI1.840e-5162.50Phosphomethylpyrimidine synthase, chloroplastic n=... [more]
A0A7S4VML7_9DINO5.650e-5164.62Hypothetical protein n=3 Tax=Alexandrium monilatum... [more]
A0A4D9D219_9STRA3.460e-5063.78ThiC-associated domain-containing protein n=2 Tax=... [more]
A0A7S2QJG1_9DINO1.910e-4760.33Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A813D6A3_POLGL2.020e-4756.15Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S2VR37_9DINO3.190e-4758.91Hypothetical protein n=2 Tax=Brandtodinium nutricu... [more]
A0A7S3TGH3_9SPIT4.800e-4658.14Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig95237contigEcto-sp8_S_contig95237:202..588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score274.2
Seed ortholog evalue3e-71
Seed eggNOG ortholog2880.D7FRY4
Model size387
KEGG rclassRC03251,RC03252
KEGG koko:K03147
KEGG ReactionR03472
KEGG Pathwayko00730,ko01100,map00730,map01100
KEGG ModuleM00127
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0007584,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010266,GO:0014070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017144,GO:0018130,GO:0019144,GO:0019438,GO:0019904,GO:0031667,GO:0033273,GO:0034641,GO:0042221,GO:0042364,GO:0042493,GO:0042723,GO:0042724,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048037,GO:0050896,GO:0051536,GO:0051540,GO:0071704,GO:0072527,GO:0072528,GO:0080041,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901698
Exons1
EggNOG free text desc.ADP-ribose pyrophosphohydrolase activity
EggNOG OGs2QRQ4@2759,COG0422@1
EC4.1.99.17
Cds size387
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145312.7128878-CDS-Ecto-sp8_S_contig95237:201..5881681145312.7128878-CDS-Ecto-sp8_S_contig95237:201..588Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95237 202..588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig95237.31121.1prot_Ecto-sp8_S_contig95237.31121.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig95237 202..588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig95237.31121.1

>prot_Ecto-sp8_S_contig95237.31121.1 ID=prot_Ecto-sp8_S_contig95237.31121.1|Name=mRNA_Ecto-sp8_S_contig95237.31121.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=129bp
GRVKRTTDPYNPDFHEVASFGDAYPESTKNYQEIVHAETGHKMKVPFRRI
HLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRGEWVKRREDSGDEVFTQ
MHYAKKGIITEEMAYCAAREGMDPEFVR*
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mRNA from alignment at Ecto-sp8_S_contig95237:202..588-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig95237.31121.1 ID=mRNA_Ecto-sp8_S_contig95237.31121.1|Name=mRNA_Ecto-sp8_S_contig95237.31121.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=387bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95237:202..588- (Ectocarpus species8 EcLAC_412)
GGGCGGGTGAAGCGCACTACCGACCCCTACAATCCGGACTTCCATGAGGT GGCTTCCTTCGGAGACGCCTACCCTGAATCTACTAAGAACTACCAGGAGA TTGTCCACGCCGAAACTGGCCACAAGATGAAAGTGCCATTCCGTAGAATC CACCTGTCCGACCCCGACCCTGGATGCTCGCATCTCGACGTGTACGACAC TGCTGGCCCCCTCGGAGCGGATCCTAGGAAGGGTTTGCCAAGCGTTCGAG GCGAATGGGTTAAACGGCGGGAGGACTCTGGGGACGAAGTGTTCACTCAG ATGCACTACGCCAAGAAGGGTATCATTACTGAGGAGATGGCATACTGTGC TGCGAGGGAGGGGATGGACCCTGAGTTCGTTAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig95237:202..588-

>mRNA_Ecto-sp8_S_contig95237.31121.1 ID=mRNA_Ecto-sp8_S_contig95237.31121.1|Name=mRNA_Ecto-sp8_S_contig95237.31121.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95237:202..588- (Ectocarpus species8 EcLAC_412)
GGGCGGGTGAAGCGCACTACCGACCCCTACAATCCGGACTTCCATGAGGT
GGCTTCCTTCGGAGACGCCTACCCTGAATCTACTAAGAACTACCAGGAGA
TTGTCCACGCCGAAACTGGCCACAAGATGAAAGTGCCATTCCGTAGAATC
CACCTGTCCGACCCCGACCCTGGATGCTCGCATCTCGACGTGTACGACAC
TGCTGGCCCCCTCGGAGCGGATCCTAGGAAGGGTTTGCCAAGCGTTCGAG
GCGAATGGGTTAAACGGCGGGAGGACTCTGGGGACGAAGTGTTCACTCAG
ATGCACTACGCCAAGAAGGGTATCATTACTGAGGAGATGGCATACTGTGC
TGCGAGGGAGGGGATGGACCCTGAGTTCGTTAGGTAG
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