mRNA_Ecto-sp8_S_contig95191.31111.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig95191.31111.1
Unique NamemRNA_Ecto-sp8_S_contig95191.31111.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig95191.31111.1 vs. uniprot
Match: A0A317CLH0_9GAMM (3-oxoacyl-ACP reductase n=1 Tax=Leucothrix pacifica TaxID=1247513 RepID=A0A317CLH0_9GAMM)

HSP 1 Score: 291 bits (745), Expect = 5.760e-98
Identity = 138/170 (81.18%), Postives = 156/170 (91.76%), Query Frame = 1
Query:    1 FVKQTMDRFGRIDAVVNCAGHGPKGDIIEISDEDWHKGMDYYMLNVVRTTRIVLPVMQKQGSGSIVNISTFAVFEPDPDFPTSAIFRAGLAGYTKLFSSKYARENIRMNNVLPGFIDSLPEKEDRVARIPAGRYAKVRELSETVAFLASDKSSYITGQNIRVDGGLTASV 510
            FV+  M+RFGRIDAVVNC GHGPKGDI++ISD+DWH GMDYY++NV+R TR+VLP+MQKQG GSIVNISTFA FEPDP FPTS +FRA LA Y+KLFS+++A ENIRMNNVLPGFIDSLP  EDR+ARIPAGRYAKVRELSETVAFLASDKSSYITGQN+RVDGGLT+SV
Sbjct:   65 FVELAMERFGRIDAVVNCTGHGPKGDIMKISDDDWHLGMDYYLMNVIRMTRLVLPIMQKQGGGSIVNISTFATFEPDPLFPTSGVFRASLAAYSKLFSTQFAAENIRMNNVLPGFIDSLPSTEDRLARIPAGRYAKVRELSETVAFLASDKSSYITGQNLRVDGGLTSSV 234          
BLAST of mRNA_Ecto-sp8_S_contig95191.31111.1 vs. uniprot
Match: A0A7D7ZFT8_9RHOB (SDR family oxidoreductase n=1 Tax=Boseongicola sp. TaxID=1886600 RepID=A0A7D7ZFT8_9RHOB)

HSP 1 Score: 290 bits (743), Expect = 1.120e-97
Identity = 139/170 (81.76%), Postives = 153/170 (90.00%), Query Frame = 1
Query:    1 FVKQTMDRFGRIDAVVNCAGHGPKGDIIEISDEDWHKGMDYYMLNVVRTTRIVLPVMQKQGSGSIVNISTFAVFEPDPDFPTSAIFRAGLAGYTKLFSSKYARENIRMNNVLPGFIDSLPEKEDRVARIPAGRYAKVRELSETVAFLASDKSSYITGQNIRVDGGLTASV 510
            FV  TM+RFGRID+V++CAGHGPKG + EISD+DWH GMDYY LNVVR  R+VLP+MQ QGSGS VNISTFAVFEPDPDFPTSA+FRAGLAGY KLFS K+A + IRMNNVLPGFI+SLPEKEDRVARIPAGRYA+V ELSE VAFLASDKSSYITGQN+RVDGGLT SV
Sbjct:   64 FVAATMERFGRIDSVISCAGHGPKGPVEEISDDDWHLGMDYYFLNVVRIARLVLPIMQTQGSGSFVNISTFAVFEPDPDFPTSAVFRAGLAGYAKLFSDKFAADGIRMNNVLPGFINSLPEKEDRVARIPAGRYARVEELSEAVAFLASDKSSYITGQNLRVDGGLTRSV 233          
BLAST of mRNA_Ecto-sp8_S_contig95191.31111.1 vs. uniprot
Match: A0A2E1V4A2_9PROT (3-oxoacyl-ACP reductase n=1 Tax=Geminicoccus sp. TaxID=2024832 RepID=A0A2E1V4A2_9PROT)

HSP 1 Score: 288 bits (737), Expect = 9.840e-97
Identity = 134/170 (78.82%), Postives = 152/170 (89.41%), Query Frame = 1
Query:    1 FVKQTMDRFGRIDAVVNCAGHGPKGDIIEISDEDWHKGMDYYMLNVVRTTRIVLPVMQKQGSGSIVNISTFAVFEPDPDFPTSAIFRAGLAGYTKLFSSKYARENIRMNNVLPGFIDSLPEKEDRVARIPAGRYAKVRELSETVAFLASDKSSYITGQNIRVDGGLTASV 510
            FV+ TM RFGRIDAV+NCAGHGPKGD++ ISDEDWH GMDYY LNV R TR+V P+M  QG G+IVN+STFA FEPDPDFPTSA+FRAGLAGY KLF+ +YA + +RMNNVLPGFIDSLPEKEDR+ARIPAGRYA+VRELSET+AFLA+D SSYITGQN+RVDGGLT SV
Sbjct:   66 FVEATMARFGRIDAVINCAGHGPKGDLLSISDEDWHLGMDYYFLNVARMTRLVTPIMAAQGKGAIVNVSTFAAFEPDPDFPTSAVFRAGLAGYNKLFADQYAAKGVRMNNVLPGFIDSLPEKEDRLARIPAGRYARVRELSETIAFLATDASSYITGQNLRVDGGLTQSV 235          
BLAST of mRNA_Ecto-sp8_S_contig95191.31111.1 vs. uniprot
Match: A0A3D2F6I1_9RHOB (3-oxoacyl-ACP reductase n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2F6I1_9RHOB)

HSP 1 Score: 286 bits (732), Expect = 5.310e-96
Identity = 135/170 (79.41%), Postives = 151/170 (88.82%), Query Frame = 1
Query:    1 FVKQTMDRFGRIDAVVNCAGHGPKGDIIEISDEDWHKGMDYYMLNVVRTTRIVLPVMQKQGSGSIVNISTFAVFEPDPDFPTSAIFRAGLAGYTKLFSSKYARENIRMNNVLPGFIDSLPEKEDRVARIPAGRYAKVRELSETVAFLASDKSSYITGQNIRVDGGLTASV 510
            FV   M RFGRID V+NCAGHGPKG I+EISDEDWH GMDYY +N+VR TR+VLP+MQ QG GSIVNISTFAVFEPDPDFPTSA+FRA LA YTKLFS+KYA E IRMNN+LPGFI+SLPEK+DR+ RIPAGRYA VREL+ETVAF+ASD SSY+TGQN+RVDGGLT SV
Sbjct:   64 FVAAAMARFGRIDTVINCAGHGPKGPIMEISDEDWHLGMDYYFMNIVRITRLVLPIMQSQGKGSIVNISTFAVFEPDPDFPTSAVFRASLASYTKLFSTKYAPEGIRMNNILPGFINSLPEKQDRLDRIPAGRYADVRELTETVAFMASDASSYVTGQNLRVDGGLTVSV 233          
BLAST of mRNA_Ecto-sp8_S_contig95191.31111.1 vs. uniprot
Match: A0A2E3INJ0_9PROT (3-oxoacyl-ACP reductase n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E3INJ0_9PROT)

HSP 1 Score: 286 bits (731), Expect = 8.630e-96
Identity = 132/170 (77.65%), Postives = 156/170 (91.76%), Query Frame = 1
Query:    1 FVKQTMDRFGRIDAVVNCAGHGPKGDIIEISDEDWHKGMDYYMLNVVRTTRIVLPVMQKQGSGSIVNISTFAVFEPDPDFPTSAIFRAGLAGYTKLFSSKYARENIRMNNVLPGFIDSLPEKEDRVARIPAGRYAKVRELSETVAFLASDKSSYITGQNIRVDGGLTASV 510
            FV+ TM +FGRIDA++NCAGHGPKG ++EISDEDWH G+DYY+LNV+R TR+V P+M  QGSG+IVN+STFAVFEPDPDFPTSA+FRAGLAG+TKLF+ K+A + +RMNNVLPGFIDSLPEK DRVARIPAGRYA+VRELSE++AFLA+D SSYITGQN+RVDGGLT SV
Sbjct:   68 FVEGTMAQFGRIDALINCAGHGPKGPVLEISDEDWHLGLDYYLLNVIRATRLVAPIMVAQGSGAIVNVSTFAVFEPDPDFPTSAVFRAGLAGFTKLFADKHAGDGVRMNNVLPGFIDSLPEKPDRVARIPAGRYARVRELSESIAFLATDASSYITGQNLRVDGGLTQSV 237          
BLAST of mRNA_Ecto-sp8_S_contig95191.31111.1 vs. uniprot
Match: A0A6I1EEJ2_9RHOB (SDR family oxidoreductase n=1 Tax=Amylibacter sp. SFDW26 TaxID=2652722 RepID=A0A6I1EEJ2_9RHOB)

HSP 1 Score: 284 bits (727), Expect = 3.170e-95
Identity = 136/170 (80.00%), Postives = 153/170 (90.00%), Query Frame = 1
Query:    1 FVKQTMDRFGRIDAVVNCAGHGPKGDIIEISDEDWHKGMDYYMLNVVRTTRIVLPVMQKQGSGSIVNISTFAVFEPDPDFPTSAIFRAGLAGYTKLFSSKYARENIRMNNVLPGFIDSLPEKEDRVARIPAGRYAKVRELSETVAFLASDKSSYITGQNIRVDGGLTASV 510
            FV   M+RFGRIDAV+NC GHGP G I++I+DE+WH G+D Y +NVVR TR+VLP+MQKQGSGSIVNISTFA FEPDPDFPTSAIFRA LA +TKLFS+KYA E IRMNN+LPGFIDSLPEK DRVARIPAGRYAKVREL+ETVAFLA+D SSY+TGQN+RVDGGLTASV
Sbjct:   65 FVDAAMNRFGRIDAVINCTGHGPNGPIMDITDENWHIGLDVYYMNVVRITRMVLPIMQKQGSGSIVNISTFAAFEPDPDFPTSAIFRASLATFTKLFSTKYAAEGIRMNNILPGFIDSLPEKPDRVARIPAGRYAKVRELAETVAFLATDASSYVTGQNLRVDGGLTASV 234          
BLAST of mRNA_Ecto-sp8_S_contig95191.31111.1 vs. uniprot
Match: A0A848UJ63_9ACTN (SDR family oxidoreductase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UJ63_9ACTN)

HSP 1 Score: 282 bits (722), Expect = 1.830e-94
Identity = 131/170 (77.06%), Postives = 152/170 (89.41%), Query Frame = 1
Query:    1 FVKQTMDRFGRIDAVVNCAGHGPKGDIIEISDEDWHKGMDYYMLNVVRTTRIVLPVMQKQGSGSIVNISTFAVFEPDPDFPTSAIFRAGLAGYTKLFSSKYARENIRMNNVLPGFIDSLPEKEDRVARIPAGRYAKVRELSETVAFLASDKSSYITGQNIRVDGGLTASV 510
            F ++ M R+GRIDAVVN AGHGPKGD++EI+DEDWH G+DYY+LNV+R TRIV P+M +QG GSIVN+STFA FEPDPDFPTSA+FRAGLA + KLFS+KYA + +RMNNVLPGFIDSLPEKEDRVARIPAGRYA+V ELSE + FLAS+KSSY+TGQNIRVDGGLTA V
Sbjct:   65 FAEKAMQRWGRIDAVVNGAGHGPKGDVLEITDEDWHTGLDYYLLNVIRMTRIVTPIMVEQGGGSIVNVSTFAAFEPDPDFPTSAVFRAGLADFAKLFSTKYAADGVRMNNVLPGFIDSLPEKEDRVARIPAGRYARVEELSEVIGFLASEKSSYVTGQNIRVDGGLTAGV 234          
BLAST of mRNA_Ecto-sp8_S_contig95191.31111.1 vs. uniprot
Match: A0A2D7FF86_9HYPH (3-oxoacyl-ACP reductase n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A2D7FF86_9HYPH)

HSP 1 Score: 266 bits (679), Expect = 6.360e-88
Identity = 124/170 (72.94%), Postives = 141/170 (82.94%), Query Frame = 1
Query:    1 FVKQTMDRFGRIDAVVNCAGHGPKGDIIEISDEDWHKGMDYYMLNVVRTTRIVLPVMQKQGSGSIVNISTFAVFEPDPDFPTSAIFRAGLAGYTKLFSSKYARENIRMNNVLPGFIDSLPEKEDRVARIPAGRYAKVRELSETVAFLASDKSSYITGQNIRVDGGLTASV 510
            F+   +  FGRID +VNCAGHGPKGD+ EI D DWH G+DYY+LNVVR   +V P+MQ QGSG+IVN+STFAVFEPDPDFPTS + RAGLA YTKLF+ K+A E IRMNNVLPGFIDSLPEK +R ARIP GRYA+V ELSET+ FL SD SSYITGQN+RVDGGLT SV
Sbjct:   65 FINAAISEFGRIDGLVNCAGHGPKGDVDEIPDTDWHLGLDYYLLNVVRAVSLVTPIMQSQGSGTIVNVSTFAVFEPDPDFPTSGVLRAGLAAYTKLFADKHAAEGIRMNNVLPGFIDSLPEKPERTARIPMGRYARVGELSETIGFLISDASSYITGQNLRVDGGLTRSV 234          
BLAST of mRNA_Ecto-sp8_S_contig95191.31111.1 vs. uniprot
Match: K6XSS3_9ALTE (Uncharacterized protein n=1 Tax=Paraglaciecola agarilytica NO2 TaxID=1125747 RepID=K6XSS3_9ALTE)

HSP 1 Score: 265 bits (677), Expect = 1.240e-87
Identity = 125/170 (73.53%), Postives = 145/170 (85.29%), Query Frame = 1
Query:    1 FVKQTMDRFGRIDAVVNCAGHGPKGDIIEISDEDWHKGMDYYMLNVVRTTRIVLPVMQKQGSGSIVNISTFAVFEPDPDFPTSAIFRAGLAGYTKLFSSKYARENIRMNNVLPGFIDSLPEKEDRVARIPAGRYAKVRELSETVAFLASDKSSYITGQNIRVDGGLTASV 510
            F+  ++DRF RID +VNC GHGPKG I+EISD++WH GMD Y+ NV+R  R+VLP MQ Q SGSIVNISTFA FEPDPDFPTSA+FRA LA +TKLFS+KYA E IRMNN+LPGF+DSLPE + RV RIPAGRYAKVREL+E VAF+AS  SSY+TGQN+RVDGGLTASV
Sbjct:   64 FINLSIDRFKRIDVLVNCTGHGPKGPIMEISDDEWHTGMDCYLTNVIRAVRLVLPTMQAQKSGSIVNISTFAAFEPDPDFPTSAVFRASLATFTKLFSTKYASEGIRMNNILPGFVDSLPETQTRVDRIPAGRYAKVRELTECVAFMASSASSYVTGQNLRVDGGLTASV 233          
BLAST of mRNA_Ecto-sp8_S_contig95191.31111.1 vs. uniprot
Match: A0A2P8NI42_9HYPH (3-oxoacyl-ACP reductase n=2 Tax=Nitratireductor TaxID=245876 RepID=A0A2P8NI42_9HYPH)

HSP 1 Score: 263 bits (671), Expect = 1.050e-86
Identity = 120/170 (70.59%), Postives = 149/170 (87.65%), Query Frame = 1
Query:    1 FVKQTMDRFGRIDAVVNCAGHGPKGDIIEISDEDWHKGMDYYMLNVVRTTRIVLPVMQKQGSGSIVNISTFAVFEPDPDFPTSAIFRAGLAGYTKLFSSKYARENIRMNNVLPGFIDSLPEKEDRVARIPAGRYAKVRELSETVAFLASDKSSYITGQNIRVDGGLTASV 510
            FV +TM+R+GR+DAV+N AGHGPKG+++ ISDEDWH+GM++Y+LNVVR TR+V PVMQ Q  G+IVNIST+A FEP+  FPTS +FRAGLA +TKLF+ +YA +NIRMNNVLPGFIDSLPEKE+R ARIPAGRY  V E++E +AFLASD+SSYITGQN+R+DGG+T SV
Sbjct:   65 FVDRTMERYGRVDAVINGAGHGPKGEVLAISDEDWHRGMEFYLLNVVRITRLVTPVMQAQNGGAIVNISTYATFEPEAAFPTSGVFRAGLAAFTKLFADRYAADNIRMNNVLPGFIDSLPEKEERRARIPAGRYGTVDEVAELIAFLASDRSSYITGQNLRIDGGITRSV 234          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig95191.31111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A317CLH0_9GAMM5.760e-9881.183-oxoacyl-ACP reductase n=1 Tax=Leucothrix pacific... [more]
A0A7D7ZFT8_9RHOB1.120e-9781.76SDR family oxidoreductase n=1 Tax=Boseongicola sp.... [more]
A0A2E1V4A2_9PROT9.840e-9778.823-oxoacyl-ACP reductase n=1 Tax=Geminicoccus sp. T... [more]
A0A3D2F6I1_9RHOB5.310e-9679.413-oxoacyl-ACP reductase n=1 Tax=Sulfitobacter sp. ... [more]
A0A2E3INJ0_9PROT8.630e-9677.653-oxoacyl-ACP reductase n=5 Tax=Alphaproteobacteri... [more]
A0A6I1EEJ2_9RHOB3.170e-9580.00SDR family oxidoreductase n=1 Tax=Amylibacter sp. ... [more]
A0A848UJ63_9ACTN1.830e-9477.06SDR family oxidoreductase n=1 Tax=Ilumatobacter sp... [more]
A0A2D7FF86_9HYPH6.360e-8872.943-oxoacyl-ACP reductase n=2 Tax=Hyphomicrobiaceae ... [more]
K6XSS3_9ALTE1.240e-8773.53Uncharacterized protein n=1 Tax=Paraglaciecola aga... [more]
A0A2P8NI42_9HYPH1.050e-8670.593-oxoacyl-ACP reductase n=2 Tax=Nitratireductor Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig95191contigEcto-sp8_S_contig95191:77..589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score261.5
Seed ortholog evalue2.6e-67
Seed eggNOG ortholog1231185.BAMP01000071_gene3338
Model size513
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Short-chain dehydrogenase reductase SDR
EggNOG OGs1PP5H@1224,2TTQV@28211,43HD0@69277,COG1028@1,COG1028@2
Cds size498
COG Functional cat.IQ
Best tax levelPhyllobacteriaceae
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145311.9519637-CDS-Ecto-sp8_S_contig95191:76..5741681145311.9519637-CDS-Ecto-sp8_S_contig95191:76..574Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95191 77..574 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145311.9635627-UTR-Ecto-sp8_S_contig95191:574..5891681145311.9635627-UTR-Ecto-sp8_S_contig95191:574..589Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig95191 575..589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig95191.31111.1prot_Ecto-sp8_S_contig95191.31111.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig95191 77..574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig95191.31111.1

>prot_Ecto-sp8_S_contig95191.31111.1 ID=prot_Ecto-sp8_S_contig95191.31111.1|Name=mRNA_Ecto-sp8_S_contig95191.31111.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=166bp
MDRFGRIDAVVNCAGHGPKGDIIEISDEDWHKGMDYYMLNVVRTTRIVLP
VMQKQGSGSIVNISTFAVFEPDPDFPTSAIFRAGLAGYTKLFSSKYAREN
IRMNNVLPGFIDSLPEKEDRVARIPAGRYAKVRELSETVAFLASDKSSYI
TGQNIRVDGGLTASV*
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mRNA from alignment at Ecto-sp8_S_contig95191:77..589-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig95191.31111.1 ID=mRNA_Ecto-sp8_S_contig95191.31111.1|Name=mRNA_Ecto-sp8_S_contig95191.31111.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=513bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95191:77..589- (Ectocarpus species8 EcLAC_412)
TTTGTCAAACAGACAATGGATCGTTTTGGCCGGATTGATGCTGTTGTTAA CTGCGCTGGCCATGGCCCTAAAGGCGACATCATAGAGATCAGTGACGAAG ACTGGCACAAAGGCATGGATTACTACATGCTCAATGTTGTGCGCACAACG CGTATTGTTTTACCGGTCATGCAAAAGCAAGGCAGCGGTTCAATTGTCAA TATTTCAACCTTTGCAGTGTTTGAACCTGATCCAGATTTCCCAACATCGG CCATCTTCCGAGCGGGGTTGGCTGGCTACACCAAATTGTTCAGTAGTAAA TATGCGCGCGAGAACATTCGCATGAATAATGTACTGCCTGGCTTTATCGA CAGCCTGCCGGAGAAAGAAGATCGCGTTGCGCGCATCCCAGCGGGCCGAT ATGCCAAAGTGCGCGAATTATCAGAAACCGTAGCATTTCTCGCATCTGAT AAATCAAGCTATATCACGGGACAAAATATCCGCGTTGATGGCGGTTTGAC CGCATCCGTATAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig95191:77..589-

>mRNA_Ecto-sp8_S_contig95191.31111.1 ID=mRNA_Ecto-sp8_S_contig95191.31111.1|Name=mRNA_Ecto-sp8_S_contig95191.31111.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95191:77..589- (Ectocarpus species8 EcLAC_412)
ATGGATCGTTTTGGCCGGATTGATGCTGTTGTTAACTGCGCTGGCCATGG
CCCTAAAGGCGACATCATAGAGATCAGTGACGAAGACTGGCACAAAGGCA
TGGATTACTACATGCTCAATGTTGTGCGCACAACGCGTATTGTTTTACCG
GTCATGCAAAAGCAAGGCAGCGGTTCAATTGTCAATATTTCAACCTTTGC
AGTGTTTGAACCTGATCCAGATTTCCCAACATCGGCCATCTTCCGAGCGG
GGTTGGCTGGCTACACCAAATTGTTCAGTAGTAAATATGCGCGCGAGAAC
ATTCGCATGAATAATGTACTGCCTGGCTTTATCGACAGCCTGCCGGAGAA
AGAAGATCGCGTTGCGCGCATCCCAGCGGGCCGATATGCCAAAGTGCGCG
AATTATCAGAAACCGTAGCATTTCTCGCATCTGATAAATCAAGCTATATC
ACGGGACAAAATATCCGCGTTGATGGCGGTTTGACCGCATCCGTATAG
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