mRNA_Ecto-sp8_S_contig9515.31099.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9515.31099.1
Unique NamemRNA_Ecto-sp8_S_contig9515.31099.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9515.31099.1 vs. uniprot
Match: A0A6H5K9B1_9PHAE (Peptidase S59 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9B1_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.000e-9
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:  175 AGFGTSTPFGSNTAQQQTPAFGAASTTFGASTTGAFGAKPXXXXXXXXXXXXGTSA 342
            AG  T+TPFGSNTAQQQTPAFGAASTTFG+STTGAFGAK XXXXXXXX XX GTSA
Sbjct:   12 AGAPTATPFGSNTAQQQTPAFGAASTTFGSSTTGAFGAKXXXXXXXXXGXXTGTSA 67
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9515.31099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9B1_9PHAE3.000e-987.50Peptidase S59 domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9515contigEcto-sp8_S_contig9515:551..3577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score126.7
Seed ortholog evalue7e-27
Seed eggNOG ortholog2880.D7FX93
Preferred nameNUP145
Model size482
KEGG koko:K14297,ko:K18716,ko:K18720
KEGG TC1.I.1
KEGG Pathwayko03013,ko05164,map03013,map05164
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000972,GO:0000973,GO:0003674,GO:0003676,GO:0003723,GO:0005048,GO:0005198,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006325,GO:0006342,GO:0006344,GO:0006348,GO:0006355,GO:0006403,GO:0006405,GO:0006406,GO:0006409,GO:0006606,GO:0006607,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0008104,GO:0008139,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016458,GO:0016973,GO:0017038,GO:0017056,GO:0019219,GO:0019222,GO:0031080,GO:0031081,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031503,GO:0031967,GO:0031975,GO:0032386,GO:0032879,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034397,GO:0034398,GO:0034504,GO:0034613,GO:0034629,GO:0034641,GO:0035392,GO:0036228,GO:0040029,GO:0042277,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044446,GO:0044464,GO:0044613,GO:0044614,GO:0045184,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0046822,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050000,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051031,GO:0051049,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051640,GO:0051641,GO:0051649,GO:0051664,GO:0051668,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0080090,GO:0090304,GO:0090435,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
Exons3
EggNOG free text desc.structural constituent of nuclear pore
EggNOG OGsKOG0845@1,KOG0845@2759
Cds size348
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145311.170011-UTR-Ecto-sp8_S_contig9515:550..6821681145311.170011-UTR-Ecto-sp8_S_contig9515:550..682Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9515 551..682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145311.1898367-CDS-Ecto-sp8_S_contig9515:682..7401681145311.1898367-CDS-Ecto-sp8_S_contig9515:682..740Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9515 683..740 +
1681145311.2067223-CDS-Ecto-sp8_S_contig9515:2785..28891681145311.2067223-CDS-Ecto-sp8_S_contig9515:2785..2889Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9515 2786..2889 +
1681145311.2250237-CDS-Ecto-sp8_S_contig9515:3391..35771681145311.2250237-CDS-Ecto-sp8_S_contig9515:3391..3577Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9515 3392..3577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9515.31099.1prot_Ecto-sp8_S_contig9515.31099.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9515 683..3577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9515.31099.1

>prot_Ecto-sp8_S_contig9515.31099.1 ID=prot_Ecto-sp8_S_contig9515.31099.1|Name=mRNA_Ecto-sp8_S_contig9515.31099.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=116bp
MFGAGGGGGFGTSSAGFGTSTPFGSNTAQQQTPAFGAASTTFGASTTGAF
GAKPTFGSTTTSGFGAGTSAFGAAKPSVFGAPAAAPAATPAFGAAAPAAS
AFGRTTSTTPFGAAPA
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mRNA from alignment at Ecto-sp8_S_contig9515:551..3577+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9515.31099.1 ID=mRNA_Ecto-sp8_S_contig9515.31099.1|Name=mRNA_Ecto-sp8_S_contig9515.31099.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3027bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9515:551..3577+ (Ectocarpus species8 EcLAC_412)
AAAGCCCAGCTAGATATCACTAAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGACGGGGTATCGAAGCTATTAGAAAGAAGACTCGAGGTAGAGGGGAA
GAAGACTGCTTGGCGTTTGCCGCCGGCACACGATGTTTGGTGCAGGGGGA
GGAGGGGGCTTCGGCACCTCTAGCGCGGGCTTCGGGACATGTGAGTTTGG
CGGGTGTGACCTGCTGCTGCCGACCAGGCTTGTTGTCTGTCTATTCCAGA
GCCCGTCGTTCCTCTTGCAACGCTGCGACTGACTCTGTTTTTAATAACGG
TCCATATCTCTTGTTTAGGTTTGAATCATCGTACAGGGGAAGTCCGATCA
AGCCACAACCATGCGACGCAGAGTAGTGGGGCGAAGGGGGTGTGAATTTC
ACAAGCGTAGGTGCTGGCGTCATGCCATGCCATGTGCACCCTTGCTGCTC
CGTCGGTGCTGTGTACTGCTGTGCTGCTCTCGCCCTAACAAACATGTTGT
TTCCGTTCGTGTTCGTCGGCCTCTACACTACGAATTACATGTGAAAACGA
ACAACCAAAATTCATTGTCTCTGACAGATGATGAGATATCCCGGCGTTTA
TGGGTGTACCAGACATGTACAGCAGTGTAGTTCAAAGCGTCATTGACATG
TAACTAGACGCGCCATGTGCTTGCAACCGCCATGATGGATGCCCCGAACC
GTATATTCTGCTGTTGGTGCTATCAGTTTATTTTATTTTTTCTGTCCCTC
ATGCACACGAATGCAAGCATGCAGTGTACACGGGGTGGCAGGACGAAACT
CTTTTCTGCACATATTCGCTTCGATCTGTCGGGTTTTTTCAAGTTTTGCG
GCACGTTCCGAGCGTCGTCGCTCGCACGGCGTATCTTGACACATGCTGCT
GTACTGCACAAGCACACATCTGCACATGTCATCACGGTTTGCAGCATGGA
ACCAGGCATAATAAAGTCGTGTCCTGATGATTGTTCGTTGGTTTGTGGGG
CACGGCAGCAAGTAGCGGTCTTTTTGTCTTTTTCGTACTCTGATTTGTCC
TGAATTTGGAAAAGTAGACGGCATGCACGAGTCCTCCCCTGTTGCTCGGT
AGGTAACCTTCGTGTTCACCAAACTACTGTATGTTTATGGCCTATGCCTT
GTCTTGGGAGCCCCCTACAAAGGGGTGTACTCACGGCCTGGTTGGCACCG
GTGACATCACTTCTCCACACACATGTAACATGTGTAAGTCCGGCCTACCT
GGTAGAAAATAGAGAGACAAGGGTAGGAACGATGCAAGCGTAAATGTCTT
GACTGCTGTTGTTTCTTTGATCCGCTATCCGTCCTGAAGGTCAGTTCCTT
CGGTTGTGTTTGGATGTTTGGATGCACCAGGCGATGTGGACTACACGGGA
TGATGTTTTTTTTCCCTCCGCCTTCCCTCTGCGGTGCTTGCCGTGCTTGC
TATCGCAAGAAAGTTTGAACCGACTCTTTGCCTCGCCGACCTACATAAAG
TCGTGTATCGTGTTGTTTCTCTTTAATTTTTCGTATTGTAACCATCTCCG
GCAAGGCCGGGCAAGAAAAAATTGGCCAAGAAAAATGACATGCGAAAATC
AGGATGGAGCAAGTTGGCGTTGACCCGGCAGGAGACTTGTACCACTCTGT
AGGCTTCTATTCCAGCTGCTGGCATGGGTTGATTGCGGTGCAAGGACTTC
CACACAGACGCAGCACTCCAGCATCCGGCAGGGGTCACCCAACCCTCGCT
AAACAGGCTTCCATCACACCCCCTCCGAGAATGCTCTTGCGTTAGATTTT
TTTCTTTCTACAAATGAAACACAAGAGAACTCGTGTTGTGTTCCCCACCT
TTGCTGCTGAACCGGGCGGGGGCGCCGGCAGTTGAAACAGAGGCCCCGAC
TCCGACGACTCGAATGGCCGGATGGTACACCACCAATGATGAAAAAAATA
TGCATACTTGTGCAGAAGGAAAAGTAGAAGAGTATGCAACTGGAGCGTGA
TATGAGGTCCATCTTGCGGCTTTGGGTACCGCGTTCAATCGCGCCCCCGC
GTCTACTGACACGACATTTTGATCTCTACAGTATCTCTACACCACGGTTT
GATCCCTGTGTGTACCACGCATTGATCCTTACAACGCATCCATCCCCTCA
ACAACTGACCCCCTTTCCACGCGCGCCCGCTACCCTCCGCTACAACCGCT
CTCGTGTTCCTCGGTGCGGCTGCTCTCCGCTTCAGCGACCCCCTTCGGCA
GCAACACGGCTCAGCAACAGACCCCAGCCTTCGGGGCAGCGTCGACGACG
TTCGGCGCCAGCACAACCGGCGCTTTCGGCGCCAAGCCGGTAAGACTACT
GCTGCTGTAGCTGTGTAGGATTCCGCGTTTTCATTTGGAAGATTTTTTTT
TTTAACAGGCTTGTGCTCGGTAGGCGATTGATTGCCTTGGAGTATTTGTT
TTTGTCGATTTGAGTTATTGTCCTGAGAATGGACTGGAAAAAAAAGTTTG
TGTATCTCAATCGCAAGTAAAATTGCCTACCGAGCACGAGAGCGTTGCTA
CAGTCCGTCGTTGCCATTCCGCTTCGGGTTGAACCGAGGGATCGGAACCC
AGTAACCAGTAACATCTGTGTTTCTGTGCCCACGTATTCGACGACATGCG
ACGAGACAATGCAACCGCTCACTTCAGCGTTGACGCGAGAGGCATCCAAG
AGCGCTCCGCTTGAACGCCCCTGCAGGAAGCAAAGATTTCGTAGCCCACG
GAGGACCTCCCTTACCCTGTCCGTATTCTATAACCGCCGAGGCGTGCAAA
ACATGAACCCCTCCCCGCCCCCCCTCCCTCCTCTCCCACAGACGTTCGGA
AGCACCACAACCAGCGGCTTCGGGGCCGGCACGAGCGCCTTCGGTGCGGC
AAAGCCCAGCGTGTTCGGCGCCCCCGCCGCGGCCCCGGCCGCCACCCCGG
CCTTCGGCGCCGCGGCCCCCGCCGCCTCCGCGTTCGGCCGGACCACGTCC
ACAACGCCGTTCGGAGCGGCGCCGGCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9515:551..3577+

>mRNA_Ecto-sp8_S_contig9515.31099.1 ID=mRNA_Ecto-sp8_S_contig9515.31099.1|Name=mRNA_Ecto-sp8_S_contig9515.31099.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9515:551..3577+ (Ectocarpus species8 EcLAC_412)
ATGTTTGGTGCAGGGGGAGGAGGGGGCTTCGGCACCTCTAGCGCGGGCTT
CGGGACATCGACCCCCTTCGGCAGCAACACGGCTCAGCAACAGACCCCAG
CCTTCGGGGCAGCGTCGACGACGTTCGGCGCCAGCACAACCGGCGCTTTC
GGCGCCAAGCCGACGTTCGGAAGCACCACAACCAGCGGCTTCGGGGCCGG
CACGAGCGCCTTCGGTGCGGCAAAGCCCAGCGTGTTCGGCGCCCCCGCCG
CGGCCCCGGCCGCCACCCCGGCCTTCGGCGCCGCGGCCCCCGCCGCCTCC
GCGTTCGGCCGGACCACGTCCACAACGCCGTTCGGAGCGGCGCCGGCG
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