mRNA_Ecto-sp8_S_contig9512.31093.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9512.31093.1
Unique NamemRNA_Ecto-sp8_S_contig9512.31093.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9512.31093.1 vs. uniprot
Match: A0A6H5K8W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W0_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.000e-31
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 2 
Query:   32 MPSPTPPSTISINPGAAISGTAPGAAEFSSPIGSAGTKVTFGTGAHVAPVPPPTGNTPAAGNNNK 226
            MPSPTPPSTISINPGAAIS TAPGAAEFSSPIGSAGTKVTFGTGA+VAPVP PTGN PAAGNNNK
Sbjct:    1 MPSPTPPSTISINPGAAISDTAPGAAEFSSPIGSAGTKVTFGTGAYVAPVPSPTGNIPAAGNNNK 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9512.31093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8W0_9PHAE3.000e-3193.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9512contigEcto-sp8_S_contig9512:3514..5046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size345
Hectar predicted targeting categoryother localisation
Exons2
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145310.772618-CDS-Ecto-sp8_S_contig9512:3513..37141681145310.772618-CDS-Ecto-sp8_S_contig9512:3513..3714Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9512 3514..3714 -
1681145310.7860963-CDS-Ecto-sp8_S_contig9512:4902..50461681145310.7860963-CDS-Ecto-sp8_S_contig9512:4902..5046Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9512 4903..5046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9512.31093.1prot_Ecto-sp8_S_contig9512.31093.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9512 3514..5046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9512.31093.1

>prot_Ecto-sp8_S_contig9512.31093.1 ID=prot_Ecto-sp8_S_contig9512.31093.1|Name=mRNA_Ecto-sp8_S_contig9512.31093.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=115bp
IHITTLHSFCYAFANAPLDHQHQSWRCYQWHGAGRGGILLADWIGRDKGY
FWNGRTRGAGPSPYRKYPRSWEQQQVKRTTTVLLLHSSNRRRCQSKDSQR
VFEGIPLVTGIHGRR
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mRNA from alignment at Ecto-sp8_S_contig9512:3514..5046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9512.31093.1 ID=mRNA_Ecto-sp8_S_contig9512.31093.1|Name=mRNA_Ecto-sp8_S_contig9512.31093.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1533bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9512:3514..5046- (Ectocarpus species8 EcLAC_412)
ATACATATCACGACCCTTCACAGCTTTTGCTATGCCTTCGCCAACGCCCC
CCTCGACCATCAGCATCAATCCTGGCGCTGCTATCAGTGGCACGGCGCCG
GGCGCGGCGGAATTCTCCTCGCCGATTGGATCGGCAGGGACAAAGTGAGA
TACACCGCGTCTACATTGCAGATCTGGTACCGTAAGTTCTCACGTGAGTG
CCGCGCCTCGCTAATCGATTTCCTGGGTGAGCCCACGTCAGATGTGCGGT
AGTTAGTTGGGGTTTCCCCTACAGTTTGTTCTAGACTTCGACTCGTTCGT
CGTGATCATTCAAGCGTCCGTGTACGTACGCTGCGCGTCGTCGTTGTTGA
TGATTGATTGGCATGTTTTAGCCCGTACTGGAGAACTGCTGTACTACAGC
AGTTGTAAGGGGTAGAGTTTGCATCATTCTGTGCCTCTGGGTTTGGGACA
CAACGAGTTACATGAATAAAAAAACACTCTGCTACAGTATGTCTGTGTTG
GCGTTGATTCCTGTAACATACACCGCCGTTTCGGACCTTTCATATGCTAC
AACAACTACAAGTAGTGGCGGGTGCTCTGTTGTTCAACAAGTTTAGCCGA
GAAAAATTCGCGAAGAAGGCTCGATGACCGCGTGCACCAGGGGCAACAGT
ACGACATATTTGTGTCAACCAAGAGACGGAACCGGTGGCTGAGTGTTGGG
TAATCGCACCGTGCTGTTCATTCATAGCACCGTGCTGTTCATTCACACCC
ACCCGATGCCAAAGCGGAGGGAGGTGCTAAACCACCGAACGAAGCCTTCC
TGTACTTCGTCGGCATACATAGCTGTTGGCGCTCCGCCTAGCGCCAACGA
GTAGCTATTGTGGAGGACCTTCAACACCCGTCCTTAAGTCCTGTCTCAGT
TAGATCATTTCTCTTCCGGTTGTATACGTGTGTGCAAGTTAATTTGTTCC
TGTTCACAACGTACGACAGACAGAAGTGACATCCAAACAGTGACAGGTAG
AACGATGAACGACAAACGAGAGAGAAAAATCCTCTTTTCTTGTGTGAAGC
ATACTCAGCATTAACCTCGACACAGGGATAACACGCAGCTAAAATTAGCC
CTGTGGCGAAGGTCCAACCTTCATCACATGCACCACCGTCTAGACCCCCC
CAAAACGGGACTCTCCAAGACCACGATCGATGACTGACGTGCTACAGTAG
CAGCATTTTCCCTGGGTCTGCCATGTCGATACTGACGTTGACACTGTGAA
AATAAACGATCCGTTTCTTTCTTGGCCCCCCCGCCTTTGCTTTACTATGT
TTTGCCTCTGCTTCGACGGGGATCACCATCAGGGTTACTTTTGGAACGGG
CGCACACGTGGCGCCGGTCCCTCCCCCTACCGGAAATACCCCCGCAGCTG
GGAACAACAACAAGTGAAGCGAACCACCACCGTACTTTTGCTCCATAGCA
GCAATCGACGACGTTGTCAGTCAAAGGATAGTCAACGCGTTTTCGAGGGC
ATTCCGTTAGTTACCGGGATCCATGGGAGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9512:3514..5046-

>mRNA_Ecto-sp8_S_contig9512.31093.1 ID=mRNA_Ecto-sp8_S_contig9512.31093.1|Name=mRNA_Ecto-sp8_S_contig9512.31093.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9512:3514..5046- (Ectocarpus species8 EcLAC_412)
ATACATATCACGACCCTTCACAGCTTTTGCTATGCCTTCGCCAACGCCCC
CCTCGACCATCAGCATCAATCCTGGCGCTGCTATCAGTGGCACGGCGCCG
GGCGCGGCGGAATTCTCCTCGCCGATTGGATCGGCAGGGACAAAGGTTAC
TTTTGGAACGGGCGCACACGTGGCGCCGGTCCCTCCCCCTACCGGAAATA
CCCCCGCAGCTGGGAACAACAACAAGTGAAGCGAACCACCACCGTACTTT
TGCTCCATAGCAGCAATCGACGACGTTGTCAGTCAAAGGATAGTCAACGC
GTTTTCGAGGGCATTCCGTTAGTTACCGGGATCCATGGGAGGAGG
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