mRNA_Ecto-sp8_S_contig95.31070.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig95.31070.1
Unique NamemRNA_Ecto-sp8_S_contig95.31070.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig95.31070.1 vs. uniprot
Match: D7G1V9_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V9_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 6.650e-73
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1
Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG
Sbjct:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 102          
BLAST of mRNA_Ecto-sp8_S_contig95.31070.1 vs. uniprot
Match: A0A836CJA1_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA1_9STRA)

HSP 1 Score: 162 bits (410), Expect = 5.080e-50
Identity = 72/102 (70.59%), Postives = 84/102 (82.35%), Query Frame = 1
Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            M  M  DW  MWGAKVK+P DM DD+L+DAI+T R+ LD C DFEAEGLA+AEKIK+H D +WDP WHV+IGRNFGSFVTHET  F+YFY+ DKA+MMYKAG
Sbjct:    1 MPSMGDDWRMMWGAKVKLPLDMPDDILKDAIDTSREVLDKCHDFEAEGLASAEKIKRHLDEQWDPHWHVVIGRNFGSFVTHETRMFLYFYIGDKAVMMYKAG 102          
BLAST of mRNA_Ecto-sp8_S_contig95.31070.1 vs. uniprot
Match: A0A7S2W886_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W886_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.280e-43
Identity = 67/102 (65.69%), Postives = 78/102 (76.47%), Query Frame = 1
Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE VP+W  MWGAKVK P D+ DDML+DAI T +  +    DFEAEG+  AEKIK+ FD RW P WHVIIG+NFGSFVTHET  F+YFY  DKA+M+YKAG
Sbjct:    1 MGEEVPEWQMMWGAKVKTPVDVPDDMLKDAILTSQRLIGEATDFEAEGVDVAEKIKREFDERWTPYWHVIIGKNFGSFVTHETKRFLYFYFDDKAVMIYKAG 102          
BLAST of mRNA_Ecto-sp8_S_contig95.31070.1 vs. uniprot
Match: A0A7S1TPD3_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPD3_9STRA)

HSP 1 Score: 145 bits (365), Expect = 3.790e-43
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 1
Query:   13 VPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            + +W+ MWGA+VK+P DM DDML+DA+ET R   +   DFE +GL AAE IK  FD +W P+WHV++GR FGSFVTHET CFVYFYL DKA+MMYKAG
Sbjct:    6 IQEWSTMWGARVKVPCDMGDDMLKDAVETTRSVFEEFPDFENDGLKAAEAIKLAFDEKWTPNWHVVVGRGFGSFVTHETKCFVYFYLDDKAVMMYKAG 103          
BLAST of mRNA_Ecto-sp8_S_contig95.31070.1 vs. uniprot
Match: A0A7S1CI82_9STRA (Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CI82_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.850e-38
Identity = 60/103 (58.25%), Postives = 76/103 (73.79%), Query Frame = 1
Query:    1 MGEMVP-DWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE  P +W  MWGAKVK P+D+ DDML DAI   R AL+   D+E+EG A  +K+KK FD +W P WH ++G NFGSFVTHE   FVYFY+ADKA++++KAG
Sbjct:    1 MGESAPVEWKHMWGAKVKWPSDLPDDMLEDAITVTRAALEGIEDWESEGDAVVDKLKKTFDEKWGPHWHAVVGTNFGSFVTHEARRFVYFYVADKAVLLFKAG 103          
BLAST of mRNA_Ecto-sp8_S_contig95.31070.1 vs. uniprot
Match: H3GHN7_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3GHN7_PHYRM)

HSP 1 Score: 119 bits (299), Expect = 4.280e-33
Identity = 61/104 (58.65%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIE--TCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE  P W  MWGAKVKMP DM DD+L DAI+  T R       ++E  GLA  E+IK H D  WDP W V IGRNFGSFVTH T  FV+FY  +KA+M+YKAG
Sbjct:    1 MGE-APSWQHMWGAKVKMPCDMEDDVLEDAIKHVTSRLTKYDTEEWEKNGLAVCEEIKAHLDEAWDPHWVVCIGRNFGSFVTHVTRNFVFFYYNEKAVMIYKAG 103          
BLAST of mRNA_Ecto-sp8_S_contig95.31070.1 vs. uniprot
Match: A0A5D6XID8_9STRA (Dynein light chain n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XID8_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.280e-33
Identity = 60/104 (57.69%), Postives = 72/104 (69.23%), Query Frame = 1
Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIE--TCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE  P+W  MWGAKVKMP DM DD+L DAI+  T R A     ++E +GL   E+IK H D  W+P W V IGRNFGS+VTH T  FVYFY  +KA+M+YKAG
Sbjct:    1 MGE-APNWQHMWGAKVKMPCDMEDDVLEDAIKHVTSRLAKYDTEEWEKQGLTVCEEIKAHMDELWEPHWVVCIGRNFGSYVTHVTRNFVYFYFNEKAVMVYKAG 103          
BLAST of mRNA_Ecto-sp8_S_contig95.31070.1 vs. uniprot
Match: A0A7S2WLS4_9STRA (Dynein light chain n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLS4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.790e-32
Identity = 55/102 (53.92%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE V +W  +WGAKVK P +M DD+L+DAI T  + L  C +FE+ G  A + IK H D +W P W   IGRNFGS V+HET  FV+FY  DKA+M+YK G
Sbjct:    3 MGEEVREWQTIWGAKVKTPVEMPDDILKDAITTVTNELAACENFESNGNLAVQNIKDHMDHKWSPHWCCFIGRNFGSKVSHETRRFVFFYHNDKAVMLYKIG 104          
BLAST of mRNA_Ecto-sp8_S_contig95.31070.1 vs. uniprot
Match: K3WRF9_GLOUD (Dynein light chain n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRF9_GLOUD)

HSP 1 Score: 116 bits (291), Expect = 7.070e-32
Identity = 59/104 (56.73%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIE--TCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE  P W  MWGAKVKMP DM DD+L D I+  T R A     ++E +GLA  E++K H D  W+P W V IGRNFGS+VTH T  FV+FY  +KAIM+YKAG
Sbjct:    1 MGE-APSWQYMWGAKVKMPCDMEDDVLEDVIKHVTTRLAKFDTEEWEKKGLAVCEELKAHMDTLWEPHWVVCIGRNFGSYVTHVTRNFVFFYYNEKAIMVYKAG 103          
BLAST of mRNA_Ecto-sp8_S_contig95.31070.1 vs. uniprot
Match: A0A1V9ZER7_9STRA (Dynein light chain n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZER7_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.020e-31
Identity = 56/104 (53.85%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDH--CADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE  P W  MWGA+VK P DM DD+L D I+     L+     ++E +GLA  E+I+ H D  WDP+W V IGRNFGS+VTH T  FVYFY  +KAI++YKAG
Sbjct:    1 MGE-APSWQNMWGARVKTPCDMEDDVLEDVIKYVTQRLEQFDTEEWEKQGLAVCEEIRDHLDKAWDPAWVVCIGRNFGSYVTHVTRNFVYFYYNEKAILIYKAG 103          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig95.31070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1V9_ECTSI6.650e-73100.00Dynein light chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A836CJA1_9STRA5.080e-5070.59Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2W886_9STRA1.280e-4365.69Dynein light chain n=1 Tax=Rhizochromulina marina ... [more]
A0A7S1TPD3_9STRA3.790e-4364.29Dynein light chain n=1 Tax=Phaeomonas parva TaxID=... [more]
A0A7S1CI82_9STRA2.850e-3858.25Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014... [more]
H3GHN7_PHYRM4.280e-3358.65Dynein light chain n=21 Tax=Oomycota TaxID=4762 Re... [more]
A0A5D6XID8_9STRA4.280e-3357.69Dynein light chain n=1 Tax=Pythium brassicum TaxID... [more]
A0A7S2WLS4_9STRA1.790e-3253.92Dynein light chain n=1 Tax=Eucampia antarctica Tax... [more]
K3WRF9_GLOUD7.070e-3256.73Dynein light chain n=1 Tax=Globisporangium ultimum... [more]
A0A1V9ZER7_9STRA2.020e-3153.85Dynein light chain n=4 Tax=Saprolegniaceae TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig95contigEcto-sp8_S_contig95:20091..21938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score220.7
Seed ortholog evalue3.2e-55
Seed eggNOG ortholog2880.D7G1V9
Model size309
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
Ec32 ortholog descriptionDynein light chain, type 1/2
Ec32 orthologEc-07_003930.1
Cds size309
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145308.8852763-CDS-Ecto-sp8_S_contig95:20090..202321681145308.8852763-CDS-Ecto-sp8_S_contig95:20090..20232Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95 20091..20232 +
1681145308.9025276-CDS-Ecto-sp8_S_contig95:20648..207571681145308.9025276-CDS-Ecto-sp8_S_contig95:20648..20757Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95 20649..20757 +
1681145308.9147112-CDS-Ecto-sp8_S_contig95:21880..219381681145308.9147112-CDS-Ecto-sp8_S_contig95:21880..21938Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95 21881..21938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig95.31070.1prot_Ecto-sp8_S_contig95.31070.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig95 20091..21938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig95.31070.1

>prot_Ecto-sp8_S_contig95.31070.1 ID=prot_Ecto-sp8_S_contig95.31070.1|Name=mRNA_Ecto-sp8_S_contig95.31070.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=103bp
MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLA
AAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYK
AG*
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mRNA from alignment at Ecto-sp8_S_contig95:20091..21938+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig95.31070.1 ID=mRNA_Ecto-sp8_S_contig95.31070.1|Name=mRNA_Ecto-sp8_S_contig95.31070.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1848bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95:20091..21938+ (Ectocarpus species8 EcLAC_412)
ATGGGAGAAATGGTGCCTGACTGGGCGCAAATGTGGGGGGCTAAGGTCAA GATGCCAACAGACATGCGCGATGACATGCTGAGAGATGCCATCGAGACAT GCAGGGATGCCTTGGATCACTGTGCGGATTTCGAAGCAGAAGGTATTTTA ATATACTGCACACCAGACAGGCCGCTTATCGATTGGGTTGCATAGCAATC AACGCTACAGAAAACGGACGCAGACGTTGATATTGCCAGTTCCGTGAGGT CATGCGTCATACAACTTCACGACACAGCAAGCGTAAAAGGTTCTTCTGGA CTGAGTACGCGTTTGGTTGACACTAAATGTTGTCGCGTGGGCACGAAATT GCTTCCAGGAAGAGCAGAAGTAATCCTCTGCCTACGCTTTTAGACAATCG ATCATGAGAGAGAGACTATCTGAACACCGCCAAAGTACTCGTTATCCTGT ATGATTTTCTGTTTTTATGTGAGAAGAGAATGGCTCCTGAAGCGCTTGCG AGAGACTCCGACGGTATTTTCCCTTTCCAAACAATTGAGTTGCACGCTTT CAAAACAGGACTAGCCGCAGCAGAGAAGATCAAAAAGCATTTCGACGCGC GGTGGGACCCCAGCTGGCATGTCATAATCGGTCGAAATTTCGGCTCTTTC GTGACGCACGAAACAACGTGAGTCTTCTCTGTTGCAGTCTGTCTAGATAC GGAACGGAAACGCATATACTGTAGCTCGCAACAGGTGTACACTCAATGAC GCGTGCAAGCGTCTATTGAGGGGGGCAAGACTTGTACTGCGTAGATCTTT CTATGTAGGAGCCTCGTTGGTTCGCTGCGTTGAGTATCACCATCATGGTT GAGGCAGCGTGATTGACGCCATTGACGCCATTGACCAACTACCAACTTTA TGGTGATGACCACATCCTACCTCACGACAACCTTGATCCACTTGGTATGG CTCCAATGCTGAGGATAGGTTTGTTTCGCCCAAGGTGTTATCGTCTAGGC TCCCGTCACCGCCTCCACTGTTTTTCGCGGGAAGAGGCTTCATGTCGTAT GATCCGTAGTTCGAACAGAAGCGTACGGGAGACATGATTTTAGGCGCGTT GCTTTTACTCTTCAACGCAATAAAGACTACAGTAGGAGCATATTTCCGGA CACGTTACCACCTCCCGTACATCTCCCTCCCTCCTTCTCCCTCGGGAGGA CGAAAACTAGGATGGCCTTTCGATTGCGTTGTGCCCTGTTCGTGTATGGT TCTTCCCGTGGTAAATCTCACTCGGGTCTTTCGGTTTGAGGATCTTGCGT GTGGTGCATGCGACACAGAGCCCTCGCTAGACACTGAGCTCCAATGGGCG ACACAACATCGTATACCTACTCAACAGATGTGCGAACATGCAGTTTAGTC CCTGAAGCAGCGTGACATCTTCATCTTTCCAAAGTGGCAGGGAAACTGGT ATCCTGGTACCGTACCGAAAGGATTGGTTTGGTTGGTTGCCATCCAGGCT ACTGGAACGACGTTCCTGAAACATATTCGGGACGAAGAGTAAATTGCTGG CGGTTCTGGAGTCTTCAGTTATTGTCTCTTTTCCCGCCATTGACCTGGAT TGTCATTTCTCGGGGCTTACTTGTCCTGAATGAGGTGAGCTTAACCACTA TGTTCGCCTAATCAAAACGGTAATTTGATGGATGTGCTCAGGCACGACCT CCCCCCGCGCGCGCGTCACTCATTTCGTTTCCCTCTTGACTCCCGCGCTT GCGATGGATCTGGCATCTCAATCTCTCTCTCGCACGAAAGGTGTTTCGTT TACTTCTACTTGGCAGACAAAGCGATCATGATGTACAAGGCCGGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig95:20091..21938+

>mRNA_Ecto-sp8_S_contig95.31070.1 ID=mRNA_Ecto-sp8_S_contig95.31070.1|Name=mRNA_Ecto-sp8_S_contig95.31070.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95:20091..21938+ (Ectocarpus species8 EcLAC_412)
ATGGGAGAAATGGTGCCTGACTGGGCGCAAATGTGGGGGGCTAAGGTCAA
GATGCCAACAGACATGCGCGATGACATGCTGAGAGATGCCATCGAGACAT
GCAGGGATGCCTTGGATCACTGTGCGGATTTCGAAGCAGAAGGACTAGCC
GCAGCAGAGAAGATCAAAAAGCATTTCGACGCGCGGTGGGACCCCAGCTG
GCATGTCATAATCGGTCGAAATTTCGGCTCTTTCGTGACGCACGAAACAA
CGTGTTTCGTTTACTTCTACTTGGCAGACAAAGCGATCATGATGTACAAG
GCCGGCTGA
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