mRNA_Ecto-sp8_S_contig95.31067.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig95.31067.1
Unique NamemRNA_Ecto-sp8_S_contig95.31067.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig95.31067.1 vs. uniprot
Match: D7G1V7_ECTSI (Myb-like DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V7_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 1.020e-59
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 3 
Query:   78 RNVSHAEQRRLIEVAHSVDRACDKDGTVDENLISAAITIVSTNAAETPNDVIMAAIKLASVARDGFVEKFKQRLMETGGVHCTTTKHKPAPAPPANRNASTISQ 389
            RNVSHAEQRRLIEVAHSVDRACDKDGTVDENLISAAITIVSTNAAETPNDVIMAAIKLASVARDGFVEKFKQRLMETGGVHCTTTKHKPAPAPPA RNASTISQ
Sbjct:  210 RNVSHAEQRRLIEVAHSVDRACDKDGTVDENLISAAITIVSTNAAETPNDVIMAAIKLASVARDGFVEKFKQRLMETGGVHCTTTKHKPAPAPPAKRNASTISQ 313
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BLAST of mRNA_Ecto-sp8_S_contig95.31067.1 vs. uniprot
Match: A0A6H5KLV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV5_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 3.880e-41
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 3 
Query:    3 LERYMKAAKLAALEVLSSSSTKETKRNVSHAEQRRLIEVAHSVDRACDKDGTVDENLISAAITIVSTNAAETPNDVIMAAIKLA 254
            LERYMKAAKLAALEVLSSSSTKE KRNVSHAEQRRLIEVAHSVDRAC KDGTVDENLISAAITIVSTNAAETPNDVIMAAIKLA
Sbjct:  259 LERYMKAAKLAALEVLSSSSTKEAKRNVSHAEQRRLIEVAHSVDRACAKDGTVDENLISAAITIVSTNAAETPNDVIMAAIKLA 342
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig95.31067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1V7_ECTSI1.020e-5999.04Myb-like DNA-binding domain containing protein n=1... [more]
A0A6H5KLV5_9PHAE3.880e-4197.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig95contigEcto-sp8_S_contig95:243..1476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score201.1
Seed ortholog evalue3.1e-49
Seed eggNOG ortholog2880.D7G1V7
Model size389
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
Cds size375
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145308.6181118-CDS-Ecto-sp8_S_contig95:242..3751681145308.6181118-CDS-Ecto-sp8_S_contig95:242..375Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95 243..375 -
1681145308.6322906-CDS-Ecto-sp8_S_contig95:840..9981681145308.6322906-CDS-Ecto-sp8_S_contig95:840..998Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95 841..998 -
1681145308.6485875-CDS-Ecto-sp8_S_contig95:1378..14621681145308.6485875-CDS-Ecto-sp8_S_contig95:1378..1462Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95 1379..1462 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145308.660458-UTR-Ecto-sp8_S_contig95:1462..14761681145308.660458-UTR-Ecto-sp8_S_contig95:1462..1476Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig95 1463..1476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig95.31067.1prot_Ecto-sp8_S_contig95.31067.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig95 243..1462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig95.31067.1

>prot_Ecto-sp8_S_contig95.31067.1 ID=prot_Ecto-sp8_S_contig95.31067.1|Name=mRNA_Ecto-sp8_S_contig95.31067.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=125bp
MKAAKLAALEVLSSSSTKETKRNVSHAEQRRLIEVAHSVDRACDKDGTVD
ENLISAAITIVSTNAAETPNDVIMAAIKLASVARDGFVEKFKQRLMETGG
VHCTTTKHKPAPAPPANRNASTISQ
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mRNA from alignment at Ecto-sp8_S_contig95:243..1476-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig95.31067.1 ID=mRNA_Ecto-sp8_S_contig95.31067.1|Name=mRNA_Ecto-sp8_S_contig95.31067.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1234bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95:243..1476- (Ectocarpus species8 EcLAC_412)
AACTGGAGCGCTACATGAAAGCGGCGAAACTGGCGGCCCTGGAGGTGCTA
TCGTCCTCTTCGACCAAGGAAACCAAGCGTAACGTATCCCACGCCGAGGT
GAGGAGGGTCCGCGTTGCTGTTATTGCTTGCAAAACGTTTTGCCGGTTGT
CCCTCCTGCTAGAGTGCTGACGCTGCTACTGCTGCGATTGTTGCTGGTGC
TGTCCCTCCACGCAAAATCCATTCCGCGCTTCGATTGTACGGCAGGCCTT
ACCCAACGACACCGGTGCTCAGTCTCTAGGGGAGCGGGAAAAAACTCTCA
TTTCACTTTCTCTCGTCCTCCGTGTACCGGAGCCTTTCGTCGCAGCGTCA
TGCATCCCCTCGCTCCAACTCCGACACCACCTCTAAAACCCTGACCCGTA
CATCTTTGTGCGCTTGCGCAACCTCATTGACTCTTTTCCCCTCTGTGTTG
CCGTGCTCGCGCGACCGCACGTCCGCAGCAACGGAGGCTGATCGAGGTCG
CGCACTCGGTAGACCGAGCCTGCGACAAAGACGGCACGGTGGACGAGAAC
CTCATCTCCGCCGCCATCACCATCGTCTCCACCAACGCGGCCGAGACGCC
CAACGACGTCATCATGGCCGCGATCAAGCTGGCCAGGTCAGCTGGTAGGG
TCGGTGGTCCACCCCACAACCTACGGCGTACGCGGCGTAAACCTCAAGTT
TCTCCGACAATAGAAGCAGAGATATACAGAAGTGAACATAAAAATCATCC
CTCACTCCCCCTTTCCGCATTATTCTCCGTGGCAACTTGGAGACCCTAGG
CAAGGTCGGTAGTTCCACGAGGCTGGTAATAATGTCGTTGAAACAATATG
CACAGGCTTGTTGCGATGAACTGACACACCCGCCTTTGAATTACCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCGAGAGCCCCACAA
CCACCACACCTAGCCACCAAACCTACCAAAACCCAGACAAACANNNNNNN
NNNGTGGGTTCAAAAGACTGTAAAAAAAATTGTCAAGGGTTTTTGTCTTG
AAATTGCCCCCCCCCCTTTTCATTCCCCCCCCCCCCCCCCCCCGTCTTCA
GTGTCGCAAGAGACGGTTTCGTCGAAAAGTTTAAGCAGCGGCTCATGGAA
ACGGGCGGGGTGCACTGCACGACCACCAAGCACAAGCCCGCACCGGCACC
TCCTGCCAACAGAAATGCATCCACCATCTCCCAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig95:243..1476-

>mRNA_Ecto-sp8_S_contig95.31067.1 ID=mRNA_Ecto-sp8_S_contig95.31067.1|Name=mRNA_Ecto-sp8_S_contig95.31067.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95:243..1476- (Ectocarpus species8 EcLAC_412)
ATGAAAGCGGCGAAACTGGCGGCCCTGGAGGTGCTATCGTCCTCTTCGAC
CAAGGAAACCAAGCGTAACGTATCCCACGCCGAGCAACGGAGGCTGATCG
AGGTCGCGCACTCGGTAGACCGAGCCTGCGACAAAGACGGCACGGTGGAC
GAGAACCTCATCTCCGCCGCCATCACCATCGTCTCCACCAACGCGGCCGA
GACGCCCAACGACGTCATCATGGCCGCGATCAAGCTGGCCAGTGTCGCAA
GAGACGGTTTCGTCGAAAAGTTTAAGCAGCGGCTCATGGAAACGGGCGGG
GTGCACTGCACGACCACCAAGCACAAGCCCGCACCGGCACCTCCTGCCAA
CAGAAATGCATCCACCATCTCCCAG
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