mRNA_Ecto-sp8_S_contig9499.31064.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp8_S_contig9499.31064.1
Unique Name	mRNA_Ecto-sp8_S_contig9499.31064.1
Type	mRNA
Organism	Ectocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)

Homology

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BLAST of mRNA_Ecto-sp8_S_contig9499.31064.1 vs. uniprot
Match: A0A6H5L448_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L448_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.660e-30
Identity = 80/145 (55.17%), Postives = 92/145 (63.45%), Query Frame = 3

Query:  492 QYRMYVCMCGMGEDRLSRTA*EAEWANKKNGCTNLRSVG*CCR*RMKGVRN*RRRYSGNARSRGFKEKMSVAFAEREERNLTIETKDKEGLHVYGILKRRNRFKRYLLHEPMDVGTKLKVKFRTGDIGIQERTQRFENVDNEDDK 926
            QYRM    CGMGE+RL R   EA+WANKK G      V        KG+             +GFKEK+SVA AEREE+NL  E+KDKEGL VYG+LK    FK YL H PMD GTKLKVKFRTGDIG++ER +R   VD EDD+
Sbjct:   40 QYRM----CGMGEERLPRIVWEAKWANKKRGRQPTEWVK-VVEDVWKGLDIGEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYL-HGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDE 178

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BLAST of mRNA_Ecto-sp8_S_contig9499.31064.1 vs. uniprot
Match: A0A6H5L9S2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9S2_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 5.010e-30
Identity = 77/138 (55.80%), Postives = 90/138 (65.22%), Query Frame = 3

Query:  513 MCGMGEDRLSRTA*EAEWANKKNGCTNLRSVG*CCR*RMKGVRN*RRRYSGNARSRGFKEKMSVAFAEREERNLTIETKDKEGLHVYGILKRRNRFKRYLLHEPMDVGTKLKVKFRTGDIGIQERTQRFENVDNEDDK 926
            MCGMGE+RL R   EA+WANKK G      V        KG+             +GFKEK+SVA AEREE+NL  E+KDKEGL VYG+LK    FK YL H PMD GTKLKVKFRTGDIG++ER +R   VD+EDD+
Sbjct:    1 MCGMGEERLPRIVWEAKWANKKRGRQPTEWVK-VVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYL-HGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDDEDDE 136

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BLAST of mRNA_Ecto-sp8_S_contig9499.31064.1 vs. uniprot
Match: A0A6H5J8H1_9PHAE (Structure-specific endonuclease subunit SLX4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H1_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 6.720e-30
Identity = 78/153 (50.98%), Postives = 92/153 (60.13%), Query Frame = 3

Query:  468 VVSSPPRRQYRMYVCMCGMGEDRLSRTA*EAEWANKKNGCTNLRSVG*CCR*RMKGVRN*RRRYSGNARSRGFKEKMSVAFAEREERNLTIETKDKEGLHVYGILKRRNRFKRYLLHEPMDVGTKLKVKFRTGDIGIQERTQRFENVDNEDDK 926
            ++S    R+     CMCGMGE+RL R   EA+WANKK G      V                        +GFKEKMSVA AEREE+N+  E+KDKEGL VYG+LK    FK YL H PMD GTKLKVKFRTGDIG++ER +R   VD EDD+
Sbjct:  151 LLSGRDARKLTWQYCMCGMGEERLPRIVWEAKWANKKRGRQPTEWV------------------------KGFKEKMSVACAEREEQNVRKESKDKEGLEVYGMLKEGIGFKDYL-HGPMDAGTKLKVKFRTGDIGLRERRRRHGTVDEEDDE 278

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BLAST of mRNA_Ecto-sp8_S_contig9499.31064.1 vs. uniprot
Match: A0A6H5K7B7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B7_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 7.980e-30
Identity = 75/138 (54.35%), Postives = 89/138 (64.49%), Query Frame = 3

Query:  513 MCGMGEDRLSRTA*EAEWANKKNGCTNLRSVG*CCR*RMKGVRN*RRRYSGNARSRGFKEKMSVAFAEREERNLTIETKDKEGLHVYGILKRRNRFKRYLLHEPMDVGTKLKVKFRTGDIGIQERTQRFENVDNEDDK 926
            MCGMGE+RL R+  EA+WANKK G    +          KG+             +GFKEK+SVA AEREE+NL  E KDKE L VYG+LK    FK YL H PMD GTKLKVKFRTGDIG++ER +R   VD+EDD+
Sbjct:    1 MCGMGEERLPRSVWEAKWANKKEGRQPTKWAK-VVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLKKEAKDKESLEVYGMLKAGIGFKDYL-HGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDDEDDE 136

[Close]

BLAST of mRNA_Ecto-sp8_S_contig9499.31064.1 vs. uniprot
Match: A0A6H5JS90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS90_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 9.930e-30
Identity = 79/151 (52.32%), Postives = 94/151 (62.25%), Query Frame = 3

Query:  474 SSPPRRQYRMYVCMCGMGEDRLSRTA*EAEWANKKNGCTNLRSVG*CCR*RMKGVRN*RRRYSGNARSRGFKEKMSVAFAEREERNLTIETKDKEGLHVYGILKRRNRFKRYLLHEPMDVGTKLKVKFRTGDIGIQERTQRFENVDNEDDK 926
            S    R+   +  MCGMGE+RL R   EA+WANKK G      V        KG+             +GFKEK+SVA AEREE+NL  E+KDKEGL VYG+LK    FK YL H PMD GTKLKVKFRTGDIG++ER +R   VD+EDD+
Sbjct:   76 SGADARKLTWHYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVK-VVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYL-HGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDDEDDE 224

[Close]

BLAST of mRNA_Ecto-sp8_S_contig9499.31064.1 vs. uniprot
Match: A0A6H5KB10_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB10_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.310e-29
Identity = 79/145 (54.48%), Postives = 91/145 (62.76%), Query Frame = 3

Query:  492 QYRMYVCMCGMGEDRLSRTA*EAEWANKKNGCTNLRSVG*CCR*RMKGVRN*RRRYSGNARSRGFKEKMSVAFAEREERNLTIETKDKEGLHVYGILKRRNRFKRYLLHEPMDVGTKLKVKFRTGDIGIQERTQRFENVDNEDDK 926
            QYRM    CGMGE+RL R   EA+WANKK G      V        KG+             +GFKEK+SVA AEREE+NL  E+KDKEGL VYG+ K    FK YL H PMD GTKLKVKFRTGDIG++ER +R   VD EDD+
Sbjct:   97 QYRM----CGMGEERLPRIVWEAKWANKKRGRQPTEWVK-VVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMSKEGVGFKEYL-HGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDE 235

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BLAST of mRNA_Ecto-sp8_S_contig9499.31064.1 vs. uniprot
Match: A0A6H5KUR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR4_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.340e-29
Identity = 80/145 (55.17%), Postives = 92/145 (63.45%), Query Frame = 3

Query:  492 QYRMYVCMCGMGEDRLSRTA*EAEWANKKNGCTNLRSVG*CCR*RMKGVRN*RRRYSGNARSRGFKEKMSVAFAEREERNLTIETKDKEGLHVYGILKRRNRFKRYLLHEPMDVGTKLKVKFRTGDIGIQERTQRFENVDNEDDK 926
            QYRM    CGMGE+RL R   EA+WANKK G      V        KG+             +GFKEK+SVA AEREE+NL  E+KDKEGL VYG+LK    FK YL H PMD GTKLKVKFRTGDIG++ER +R   VD EDD+
Sbjct:   64 QYRM----CGMGEERLLRIVWEAKWANKKRGRQPTEWVK-VVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLWKESKDKEGLKVYGMLKEGIGFKDYL-HGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDE 202

[Close]

BLAST of mRNA_Ecto-sp8_S_contig9499.31064.1 vs. uniprot
Match: A0A6H5J603_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J603_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.940e-29
Identity = 79/145 (54.48%), Postives = 92/145 (63.45%), Query Frame = 3

Query:  492 QYRMYVCMCGMGEDRLSRTA*EAEWANKKNGCTNLRSVG*CCR*RMKGVRN*RRRYSGNARSRGFKEKMSVAFAEREERNLTIETKDKEGLHVYGILKRRNRFKRYLLHEPMDVGTKLKVKFRTGDIGIQERTQRFENVDNEDDK 926
            QYRM    CGMGE+RL R   EA+WANKK G      V        KG              +GFKEK+SVA AEREE+NL  E+KDKEGL VYG+LK    FK YL H PMD GTKLKVKFRTGD+G++ER +R   VD+EDD+
Sbjct:  147 QYRM----CGMGEERLPRIVWEAKWANKKRGRQPTEWVN-VVEDVWKGFDIDEDETLETESLQGFKEKLSVACAEREEQNLWKESKDKEGLEVYGMLKEGKTFKDYL-HGPMDAGTKLKVKFRTGDMGLRERRRRHRTVDDEDDE 285

[Close]

BLAST of mRNA_Ecto-sp8_S_contig9499.31064.1 vs. uniprot
Match: A0A6H5KS87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS87_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.500e-29
Identity = 81/145 (55.86%), Postives = 92/145 (63.45%), Query Frame = 3

Query:  492 QYRMYVCMCGMGEDRLSRTA*EAEWANKKNGCTNLRSVG*CCR*RMKGVRN*RRRYSGNARSRGFKEKMSVAFAEREERNLTIETKDKEGLHVYGILKRRNRFKRYLLHEPMDVGTKLKVKFRTGDIGIQERTQRFENVDNEDDK 926
            QYRM    CGMGE+RL R   EA+WANKK G      V        KG+             +GFKEK+SVA AEREE+NL  ETKDKEGL VYG+LK    FK YL H PMD GTKLKVKFRTGDIG++ER +R   VD EDD+
Sbjct:   95 QYRM----CGMGEERLPRIVWEAKWANKKRGRQPTEWVK-VVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEKNLRKETKDKEGLQVYGMLKEGIGFKDYL-HGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDE 233

[Close]

BLAST of mRNA_Ecto-sp8_S_contig9499.31064.1 vs. uniprot
Match: A0A6H5JT82_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT82_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 6.000e-29
Identity = 80/145 (55.17%), Postives = 92/145 (63.45%), Query Frame = 3

Query:  492 QYRMYVCMCGMGEDRLSRTA*EAEWANKKNGCTNLRSVG*CCR*RMKGVRN*RRRYSGNARSRGFKEKMSVAFAEREERNLTIETKDKEGLHVYGILKRRNRFKRYLLHEPMDVGTKLKVKFRTGDIGIQERTQRFENVDNEDDK 926
            QYRM    CGMGE+RL R   EA+WANKK G      V        KG+             +GFKEK+SVA AEREE+NL  E+KDKEGL VYG+LK    FK YL H PMD GTKLKVKFRTGDIG++ER +R   VD EDD+
Sbjct:  146 QYRM----CGMGEERLPRIVWEAKWANKKRGRQPTEWVK-VVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYL-HGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDE 284

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp8_S_contig9499.31064.1 vs. uniprot

BLAST of mRNA_Ecto-sp8_S_contig9499.31064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L448_9PHAE	3.660e-30	55.17	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L9S2_9PHAE	5.010e-30	55.80	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J8H1_9PHAE	6.720e-30	50.98	Structure-specific endonuclease subunit SLX4 n=1 T...	[more]
A0A6H5K7B7_9PHAE	7.980e-30	54.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JS90_9PHAE	9.930e-30	52.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KB10_9PHAE	1.310e-29	54.48	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KUR4_9PHAE	1.340e-29	55.17	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J603_9PHAE	1.940e-29	54.48	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KS87_9PHAE	3.500e-29	55.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JT82_9PHAE	6.000e-29	55.17	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp8_S_contig9499	contig	Ecto-sp8_S_contig9499:77..1005 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species8 EcLAC_412 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	931
Hectar predicted targeting category	other localisation
Exons	1
Cds size	234

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681145308.4800048-UTR-Ecto-sp8_S_contig9499:76..771	1681145308.4800048-UTR-Ecto-sp8_S_contig9499:76..771	Ectocarpus species8 EcLAC_412	UTR	Ecto-sp8_S_contig9499 77..771 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681145308.4921503-CDS-Ecto-sp8_S_contig9499:771..1005	1681145308.4921503-CDS-Ecto-sp8_S_contig9499:771..1005	Ectocarpus species8 EcLAC_412	CDS	Ecto-sp8_S_contig9499 772..1005 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp8_S_contig9499.31064.1	prot_Ecto-sp8_S_contig9499.31064.1	Ectocarpus species8 EcLAC_412	polypeptide	Ecto-sp8_S_contig9499 772..1005 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp8_S_contig9499:77..1005+
coding sequence from alignment at Ecto-sp8_S_contig9499:77..1005+

protein sequence of mRNA_Ecto-sp8_S_contig9499.31064.1

>prot_Ecto-sp8_S_contig9499.31064.1 ID=prot_Ecto-sp8_S_contig9499.31064.1|Name=mRNA_Ecto-sp8_S_contig9499.31064.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=78bp
MSVAFAEREERNLTIETKDKEGLHVYGILKRRNRFKRYLLHEPMDVGTKL
KVKFRTGDIGIQERTQRFENVDNEDDKS

mRNA from alignment at Ecto-sp8_S_contig9499:77..1005+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp8_S_contig9499.31064.1 ID=mRNA_Ecto-sp8_S_contig9499.31064.1|Name=mRNA_Ecto-sp8_S_contig9499.31064.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=929bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9499:77..1005+ (Ectocarpus species8 EcLAC_412)
CCCTGTGTAGCGCCCGTGAAATTGCCGGACACAGACTGAATCGCCAAGAA
ACTATGTACATTGAATAGCGCCGGTCCCTCTGGATAGCGCCCGTCGATGT
AGCTATACCACATCGACCGGGGTGATTGAGGGTCCTTCACTGATATCCCT
TCGCCGGTCAAACTCCCTCCCCCGGGGGCTAGTGAAACAAACCCGACGCG
AAACATTGTTTGTCGTGGCCGACGTGGGGTACAGAACGCGCCCCCACTTA
AGAACCGCTTATTTAGCTTGAGGCTCGACTCTTATTGGTTGCTTCCAACC
GAGCACATGTTCTTATTAGCCAAGTTTTTATTTGGAGCAGTCATCCACCT
ATGATAAACGGGGTTCTTGTTCTTAGTTCTGTGTAAACCGATTGCCCTAT
GCAGAGGACACAGGTCTTTCTGGGTGGATTTCATCACGAGACACTTCTGA
TGTAAGTGTACAATATAGTCGTATCATCCCCCCCTAGACGGCAGTACCGC
ATGTATGTATGTATGTGCGGCATGGGAGAGGACAGGTTGTCGAGAACAGC
TTAGGAGGCGGAGTGGGCAAACAAGAAGAATGGGTGCACCAATCTACGAA
GTGTGGGTTAATGTTGTAGATGACGCATGAAAGGGGTTCGAAATTGACGC
AGACGATACTCTGGAAACGCAAGGTCTAGAGGATTTAAGGAGAAGATGTC
TGTTGCTTTTGCCGAGAGAGAAGAACGTAACCTAACTATAGAAACCAAGG
ATAAGGAGGGTCTGCATGTGTACGGAATATTGAAAAGAAGGAATAGATTT
AAGAGGTACCTTCTTCATGAACCAATGGATGTAGGGACAAAGCTGAAAGT
CAAATTTAGGACTGGGGACATTGGCATTCAAGAACGTACACAAAGATTTG
AGAACGTAGACAATGAAGACGACAAATCT

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9499:77..1005+

>mRNA_Ecto-sp8_S_contig9499.31064.1 ID=mRNA_Ecto-sp8_S_contig9499.31064.1|Name=mRNA_Ecto-sp8_S_contig9499.31064.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9499:77..1005+ (Ectocarpus species8 EcLAC_412)
ATGTCTGTTGCTTTTGCCGAGAGAGAAGAACGTAACCTAACTATAGAAAC
CAAGGATAAGGAGGGTCTGCATGTGTACGGAATATTGAAAAGAAGGAATA
GATTTAAGAGGTACCTTCTTCATGAACCAATGGATGTAGGGACAAAGCTG
AAAGTCAAATTTAGGACTGGGGACATTGGCATTCAAGAACGTACACAAAG
ATTTGAGAACGTAGACAATGAAGACGACAAATCT