mRNA_Ecto-sp8_S_contig94976.31061.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: D7FIC1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIC1_ECTSI) HSP 1 Score: 136 bits (342), Expect = 3.680e-36 Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1
Query: 19 QNIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLEKRA 219
QNIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLEKRA
Sbjct: 100 QNIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLEKRA 166
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: D6WMS0_TRICA (TraB domain-containing protein-like Protein n=2 Tax=Tribolium TaxID=7069 RepID=D6WMS0_TRICA) HSP 1 Score: 56.2 bits (134), Expect = 1.730e-7 Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 1
Query: 22 NIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRD 204
N+P T +L+ EATG +YLVG H S+ S DV V+ + P AVVLELC SR L D
Sbjct: 56 NLPETVTLLKHEATGAKVYLVGTAHFSNESKEDVIKVIRNILPHAVVLELCASRTNILSLD 116
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: A0A482VZR3_9CUCU (TraB domain-containing protein n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482VZR3_9CUCU) HSP 1 Score: 55.8 bits (133), Expect = 2.370e-7 Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 1
Query: 22 NIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRD 204
N+P T +L+ EATG +YLVG H S+ S DV V++ + P VVLELC SR L D
Sbjct: 56 NLPETVTLLKHEATGAKVYLVGTAHFSNESKEDVIKVIQNILPHVVVLELCSSRTNILSLD 116
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: A0A7S0ZFW7_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZFW7_9RHOD) HSP 1 Score: 55.1 bits (131), Expect = 4.450e-7 Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 1
Query: 22 NIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGA---VVLELCESRHKALR 198
++P T + L D +GCDI ++GC+HGS S DV+ V E + + VVLELC+ R K LR
Sbjct: 54 DLPSTVVHLHDSKSGCDILVIGCVHGSFQSAADVEKVFELTQHASHTSVVLELCDQRLKTLR 115
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: A0A7S0KB33_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KB33_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 1.820e-6 Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 46 LRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLE 210
L +TGC++ LVG +HGS +S DV LE+ VVLELC SR +RRD+E
Sbjct: 101 LTHPSTGCNVTLVGVVHGSASSSNDVAKTLERKDVDVVVLELCASRFADMRRDME 155
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: A0A061R3V5_9CHLO (Uncharacterized protein (Fragment) n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R3V5_9CHLO) HSP 1 Score: 51.6 bits (122), Expect = 7.110e-6 Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1
Query: 31 HTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRD 204
+TS LR+ + G +I++VG H S S +V+DV+ +V+P V LELC R LRRD
Sbjct: 37 NTSSYLRNLSNGGEIFIVGTSHVSECSADEVRDVIRRVKPDVVFLELCRERASILRRD 94
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: UPI0009A2D093 (traB domain-containing protein-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A2D093) HSP 1 Score: 50.8 bits (120), Expect = 1.380e-5 Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1
Query: 64 GCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRD 204
GC +YLVG +H S S +DVQ ++++V+P AVVLE+C+ R + L D
Sbjct: 43 GCKVYLVGTIHFSKQSIKDVQQIIQEVQPDAVVLEVCQYREQLLTLD 89
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: A0A7S3ED37_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ED37_9RHOD) HSP 1 Score: 50.4 bits (119), Expect = 1.890e-5 Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 43 VLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPG--AVVLELCESRHKAL 195
V+RDE +G D+Y+VGC+HG +S RD++ V V AV++ELCE R + +
Sbjct: 48 VVRDEKSGVDVYVVGCIHGFRSSVRDIETVAGSVTSPLRAVMIELCEDRWRVI 100
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: A0A3M7R9G6_BRAPC (TraB domain-containing-like n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7R9G6_BRAPC) HSP 1 Score: 49.7 bits (117), Expect = 3.170e-5 Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1
Query: 22 NIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLE 210
N T+LV+ + +YLVG H S S ++V+D+++KV+P VVLELC+SR L D E
Sbjct: 12 NSSSTNLVILEGPLNGKVYLVGTAHFSLESQQEVRDLIQKVQPNRVVLELCQSRRGILNLDEE 74
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: A0A7S0BC06_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BC06_9RHOD) HSP 1 Score: 49.7 bits (117), Expect = 3.550e-5 Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 43 VLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPG--AVVLELCESRHKAL 195
V+RDE +G D+Y+VGC+HG +S RDV+ V V AV++ELCE R + +
Sbjct: 48 VVRDEKSGVDVYVVGCVHGFRSSVRDVETVAACVTSPLRAVMIELCEDRWRVI 100 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig94976.31061.1 >prot_Ecto-sp8_S_contig94976.31061.1 ID=prot_Ecto-sp8_S_contig94976.31061.1|Name=mRNA_Ecto-sp8_S_contig94976.31061.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=73bp RCFRHPQNIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPback to top mRNA from alignment at Ecto-sp8_S_contig94976:62..542- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig94976.31061.1 ID=mRNA_Ecto-sp8_S_contig94976.31061.1|Name=mRNA_Ecto-sp8_S_contig94976.31061.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=481bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94976:62..542- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig94976:62..542- >mRNA_Ecto-sp8_S_contig94976.31061.1 ID=mRNA_Ecto-sp8_S_contig94976.31061.1|Name=mRNA_Ecto-sp8_S_contig94976.31061.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94976:62..542- (Ectocarpus species8 EcLAC_412)back to top |