mRNA_Ecto-sp8_S_contig94976.31061.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig94976.31061.1
Unique NamemRNA_Ecto-sp8_S_contig94976.31061.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: D7FIC1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIC1_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 3.680e-36
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1
Query:   19 QNIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLEKRA 219
            QNIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLEKRA
Sbjct:  100 QNIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLEKRA 166          
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: D6WMS0_TRICA (TraB domain-containing protein-like Protein n=2 Tax=Tribolium TaxID=7069 RepID=D6WMS0_TRICA)

HSP 1 Score: 56.2 bits (134), Expect = 1.730e-7
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 1
Query:   22 NIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRD 204
            N+P T  +L+ EATG  +YLVG  H S+ S  DV  V+  + P AVVLELC SR   L  D
Sbjct:   56 NLPETVTLLKHEATGAKVYLVGTAHFSNESKEDVIKVIRNILPHAVVLELCASRTNILSLD 116          
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: A0A482VZR3_9CUCU (TraB domain-containing protein n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482VZR3_9CUCU)

HSP 1 Score: 55.8 bits (133), Expect = 2.370e-7
Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 1
Query:   22 NIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRD 204
            N+P T  +L+ EATG  +YLVG  H S+ S  DV  V++ + P  VVLELC SR   L  D
Sbjct:   56 NLPETVTLLKHEATGAKVYLVGTAHFSNESKEDVIKVIQNILPHVVVLELCSSRTNILSLD 116          
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: A0A7S0ZFW7_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZFW7_9RHOD)

HSP 1 Score: 55.1 bits (131), Expect = 4.450e-7
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   22 NIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGA---VVLELCESRHKALR 198
            ++P T + L D  +GCDI ++GC+HGS  S  DV+ V E  +  +   VVLELC+ R K LR
Sbjct:   54 DLPSTVVHLHDSKSGCDILVIGCVHGSFQSAADVEKVFELTQHASHTSVVLELCDQRLKTLR 115          
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: A0A7S0KB33_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KB33_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.820e-6
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   46 LRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLE 210
            L   +TGC++ LVG +HGS +S  DV   LE+     VVLELC SR   +RRD+E
Sbjct:  101 LTHPSTGCNVTLVGVVHGSASSSNDVAKTLERKDVDVVVLELCASRFADMRRDME 155          
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: A0A061R3V5_9CHLO (Uncharacterized protein (Fragment) n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R3V5_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 7.110e-6
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   31 HTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRD 204
            +TS  LR+ + G +I++VG  H S  S  +V+DV+ +V+P  V LELC  R   LRRD
Sbjct:   37 NTSSYLRNLSNGGEIFIVGTSHVSECSADEVRDVIRRVKPDVVFLELCRERASILRRD 94          
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: UPI0009A2D093 (traB domain-containing protein-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A2D093)

HSP 1 Score: 50.8 bits (120), Expect = 1.380e-5
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1
Query:   64 GCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRD 204
            GC +YLVG +H S  S +DVQ ++++V+P AVVLE+C+ R + L  D
Sbjct:   43 GCKVYLVGTIHFSKQSIKDVQQIIQEVQPDAVVLEVCQYREQLLTLD 89          
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: A0A7S3ED37_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ED37_9RHOD)

HSP 1 Score: 50.4 bits (119), Expect = 1.890e-5
Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   43 VLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPG--AVVLELCESRHKAL 195
            V+RDE +G D+Y+VGC+HG  +S RD++ V   V     AV++ELCE R + +
Sbjct:   48 VVRDEKSGVDVYVVGCIHGFRSSVRDIETVAGSVTSPLRAVMIELCEDRWRVI 100          
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: A0A3M7R9G6_BRAPC (TraB domain-containing-like n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7R9G6_BRAPC)

HSP 1 Score: 49.7 bits (117), Expect = 3.170e-5
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1
Query:   22 NIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLE 210
            N   T+LV+ +      +YLVG  H S  S ++V+D+++KV+P  VVLELC+SR   L  D E
Sbjct:   12 NSSSTNLVILEGPLNGKVYLVGTAHFSLESQQEVRDLIQKVQPNRVVLELCQSRRGILNLDEE 74          
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Match: A0A7S0BC06_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BC06_9RHOD)

HSP 1 Score: 49.7 bits (117), Expect = 3.550e-5
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   43 VLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPG--AVVLELCESRHKAL 195
            V+RDE +G D+Y+VGC+HG  +S RDV+ V   V     AV++ELCE R + +
Sbjct:   48 VVRDEKSGVDVYVVGCVHGFRSSVRDVETVAACVTSPLRAVMIELCEDRWRVI 100          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94976.31061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FIC1_ECTSI3.680e-36100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D6WMS0_TRICA1.730e-749.18TraB domain-containing protein-like Protein n=2 Ta... [more]
A0A482VZR3_9CUCU2.370e-747.54TraB domain-containing protein n=1 Tax=Asbolus ver... [more]
A0A7S0ZFW7_9RHOD4.450e-745.16Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
A0A7S0KB33_9STRA1.820e-649.09Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A061R3V5_9CHLO7.110e-644.83Uncharacterized protein (Fragment) n=2 Tax=Tetrase... [more]
UPI0009A2D0931.380e-548.94traB domain-containing protein-like n=1 Tax=Rhinco... [more]
A0A7S3ED37_9RHOD1.890e-545.28Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A3M7R9G6_BRAPC3.170e-542.86TraB domain-containing-like n=1 Tax=Brachionus pli... [more]
A0A7S0BC06_9RHOD3.550e-547.17Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94976contigEcto-sp8_S_contig94976:62..542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score138.7
Seed ortholog evalue1.1e-30
Seed eggNOG ortholog2880.D7FIC1
Model size219
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2SW75@2759,COG1916@1
Cds size219
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145308.2426615-CDS-Ecto-sp8_S_contig94976:61..1991681145308.2426615-CDS-Ecto-sp8_S_contig94976:61..199Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94976 62..199 -
1681145308.2550077-CDS-Ecto-sp8_S_contig94976:461..5421681145308.2550077-CDS-Ecto-sp8_S_contig94976:461..542Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94976 462..542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94976.31061.1prot_Ecto-sp8_S_contig94976.31061.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig94976 62..542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig94976.31061.1

>prot_Ecto-sp8_S_contig94976.31061.1 ID=prot_Ecto-sp8_S_contig94976.31061.1|Name=mRNA_Ecto-sp8_S_contig94976.31061.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=73bp
RCFRHPQNIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRP
GAVVLELCESRHKALRRDLEKRA
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mRNA from alignment at Ecto-sp8_S_contig94976:62..542-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig94976.31061.1 ID=mRNA_Ecto-sp8_S_contig94976.31061.1|Name=mRNA_Ecto-sp8_S_contig94976.31061.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=481bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94976:62..542- (Ectocarpus species8 EcLAC_412)
CGATGTTTCCGCCATCCGCAGAACATCCCGCACACTTCTCTGGTGCTGAG GGACGAGGCCACAGGCTGCGACATTTACCTGGTGAGAGAAAGCCTACTCC CGCTTATCGTCTCGGTTGCTTTTTCCTTGTGGTAGGTGGTGATGCTGCTG CGGTGGCGGCGGCTGTTGTCGTTTGTCGTTGTTGGGTGGGTTTGGGGTTA ATTTTGCCGCGCAGTCTTGAACTATGCGGAGGGGATGCCGCCTTCCCGCA CAACGCCTCTTCATAACCGCACGGAACCGTTTGCGGATTCCGAGCAAAAG GTCTCGTACGCTTCCCGCTTTTGTGGCGTGTTGTCGCCTGTAGGTGGGCT GCTTGCACGGCTCTCACGCATCGGGACGAGACGTGCAGGACGTGCTCGAG AAAGTGCGGCCCGGGGCGGTGGTGTTGGAGCTGTGCGAGAGCCGGCACAA GGCACTCCGGCGGGACCTGGAGAAGAGAGCA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig94976:62..542-

>mRNA_Ecto-sp8_S_contig94976.31061.1 ID=mRNA_Ecto-sp8_S_contig94976.31061.1|Name=mRNA_Ecto-sp8_S_contig94976.31061.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94976:62..542- (Ectocarpus species8 EcLAC_412)
CGATGTTTCCGCCATCCGCAGAACATCCCGCACACTTCTCTGGTGCTGAG
GGACGAGGCCACAGGCTGCGACATTTACCTGGTGGGCTGCTTGCACGGCT
CTCACGCATCGGGACGAGACGTGCAGGACGTGCTCGAGAAAGTGCGGCCC
GGGGCGGTGGTGTTGGAGCTGTGCGAGAGCCGGCACAAGGCACTCCGGCG
GGACCTGGAGAAGAGAGCA
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