mRNA_Ecto-sp8_S_contig94930.31057.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig94930.31057.1
Unique NamemRNA_Ecto-sp8_S_contig94930.31057.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig94930.31057.1 vs. uniprot
Match: A0A6H5L2V5_9PHAE (Beta_elim_lyase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2V5_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.940e-22
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 1
Query:    1 GARLWNAAVSLEVRPSELVSGADSVSVCLSKGLGAPVGSVLVGSEQFIYEVR 156
            GARLWNAAVSLEVRPSELVS ADSVSVCLSKGLGAPVGSVLVGSEQFIYE R
Sbjct:  323 GARLWNAAVSLEVRPSELVSDADSVSVCLSKGLGAPVGSVLVGSEQFIYEAR 374          
BLAST of mRNA_Ecto-sp8_S_contig94930.31057.1 vs. uniprot
Match: UPI00166F93C3 (aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme n=1 Tax=Streptomyces fuscichromogenes TaxID=1324013 RepID=UPI00166F93C3)

HSP 1 Score: 79.3 bits (194), Expect = 3.230e-16
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 1
Query:    1 GARLWNAAVSLEVRPSELVSGADSVSVCLSKGLGAPVGSVLVGSEQFIYEVR 156
            GARLWNAAV+L VRP+EL +GAD+V VCLSKGLGAPVGSVL G  +F+ E R
Sbjct:  180 GARLWNAAVALGVRPAELAAGADTVQVCLSKGLGAPVGSVLAGDAEFVREAR 231          
BLAST of mRNA_Ecto-sp8_S_contig94930.31057.1 vs. uniprot
Match: A0A1G1C2C8_9BACT (Threonine aldolase n=1 Tax=Lentisphaerae bacterium RIFOXYB12_FULL_65_16 TaxID=1798581 RepID=A0A1G1C2C8_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 1.680e-15
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 1
Query:    1 GARLWNAAVSLEVRPSELVSGADSVSVCLSKGLGAPVGSVLVGSEQFIYEVR 156
            GARL+NA+V+L+VRPSELV+ ADSVSVCLSKGLGAPVG+V+ GS+ FI E R
Sbjct:  173 GARLFNASVALDVRPSELVADADSVSVCLSKGLGAPVGAVVCGSKAFITEAR 224          
BLAST of mRNA_Ecto-sp8_S_contig94930.31057.1 vs. uniprot
Match: A0A812X8Y3_9DINO (THA2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812X8Y3_9DINO)

HSP 1 Score: 77.4 bits (189), Expect = 1.780e-15
Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 GARLWNAAVSLEVRPSELVSGADSVSVCLSKGLGAPVGSVLVGSEQFIYEVR 156
            GARLWNAAV+L + P+ELV  ADSV+VCLSKGLGAPVGSVLVG+ +FI++ R
Sbjct:  189 GARLWNAAVALGLPPAELVKPADSVNVCLSKGLGAPVGSVLVGTAEFIHKAR 240          
BLAST of mRNA_Ecto-sp8_S_contig94930.31057.1 vs. uniprot
Match: A0A3A0AG25_9CHLR (Low-specificity L-threonine aldolase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0AG25_9CHLR)

HSP 1 Score: 77.4 bits (189), Expect = 1.860e-15
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 1
Query:    1 GARLWNAAVSLEVRPSELVSGADSVSVCLSKGLGAPVGSVLVGSEQFIYEVR 156
            GARLWNAAV+L+V P+ LV  ADSVSVCLSKGLGAPVGSV+ GS +FI   R
Sbjct:  177 GARLWNAAVALDVAPARLVQSADSVSVCLSKGLGAPVGSVVAGSAEFIQRAR 228          
BLAST of mRNA_Ecto-sp8_S_contig94930.31057.1 vs. uniprot
Match: A0A1H9AKJ4_9PSEU (L-threonine aldolase n=5 Tax=Lentzea TaxID=165301 RepID=A0A1H9AKJ4_9PSEU)

HSP 1 Score: 77.0 bits (188), Expect = 2.150e-15
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1
Query:    1 GARLWNAAVSLEVRPSELVSGADSVSVCLSKGLGAPVGSVLVGSEQFIYEVR 156
            GARLWNA+V+L V PSEL +GAD+V VCLSKGLGAPVGSV+ GS  F+ E R
Sbjct:  172 GARLWNASVALGVPPSELTTGADTVQVCLSKGLGAPVGSVVAGSSSFVVEAR 223          
BLAST of mRNA_Ecto-sp8_S_contig94930.31057.1 vs. uniprot
Match: A0A429RAR5_9ACTN (Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme n=2 Tax=Streptomyces TaxID=1883 RepID=A0A429RAR5_9ACTN)

HSP 1 Score: 77.0 bits (188), Expect = 2.270e-15
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1
Query:    1 GARLWNAAVSLEVRPSELVSGADSVSVCLSKGLGAPVGSVLVGSEQFIYEVR 156
            GARLWNAAV+L+V P++L  GAD++ VCLSKGLGAPVGSVL GS  F+ E R
Sbjct:  180 GARLWNAAVALDVPPADLAEGADTIQVCLSKGLGAPVGSVLAGSTDFVREAR 231          
BLAST of mRNA_Ecto-sp8_S_contig94930.31057.1 vs. uniprot
Match: A0A1Q9E1W6_SYMMI (Putative low-specificity L-threonine aldolase 2 n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9E1W6_SYMMI)

HSP 1 Score: 77.4 bits (189), Expect = 2.560e-15
Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 GARLWNAAVSLEVRPSELVSGADSVSVCLSKGLGAPVGSVLVGSEQFIYEVR 156
            GARLWNAAV+L + P+ELV  ADSV+VCLSKGLGAPVGSVLVG+ +FI++ R
Sbjct:  685 GARLWNAAVALGLPPAELVKPADSVNVCLSKGLGAPVGSVLVGTAEFIHKAR 736          
BLAST of mRNA_Ecto-sp8_S_contig94930.31057.1 vs. uniprot
Match: UPI001BADD23F (aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme n=1 Tax=Kutzneria sp. CA-103260 TaxID=2802641 RepID=UPI001BADD23F)

HSP 1 Score: 76.6 bits (187), Expect = 3.210e-15
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1
Query:    1 GARLWNAAVSLEVRPSELVSGADSVSVCLSKGLGAPVGSVLVGSEQFIYEVR 156
            GARLWNAA++L V P+EL  G DSV VCLSKGLGAPVGSV+ G+E+F+ E R
Sbjct:  183 GARLWNAAIALGVAPAELAVGVDSVQVCLSKGLGAPVGSVVAGTEEFVAEAR 234          
BLAST of mRNA_Ecto-sp8_S_contig94930.31057.1 vs. uniprot
Match: A0A3S9PDI1_STRLT (Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme n=1 Tax=Streptomyces luteoverticillatus TaxID=66425 RepID=A0A3S9PDI1_STRLT)

HSP 1 Score: 76.3 bits (186), Expect = 4.570e-15
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    1 GARLWNAAVSLEVRPSELVSGADSVSVCLSKGLGAPVGSVLVGSEQFIYEVR 156
            GARLWNAAV+L V P++L  GADSV VCLSKGLGAPVGSVL G  +F+ E R
Sbjct:  180 GARLWNAAVALGVPPADLAEGADSVQVCLSKGLGAPVGSVLAGGTEFVREAR 231          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94930.31057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2V5_9PHAE1.940e-2296.15Beta_elim_lyase domain-containing protein n=2 Tax=... [more]
UPI00166F93C33.230e-1673.08aminotransferase class I/II-fold pyridoxal phospha... [more]
A0A1G1C2C8_9BACT1.680e-1575.00Threonine aldolase n=1 Tax=Lentisphaerae bacterium... [more]
A0A812X8Y3_9DINO1.780e-1573.08THA2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A3A0AG25_9CHLR1.860e-1573.08Low-specificity L-threonine aldolase n=1 Tax=Chlor... [more]
A0A1H9AKJ4_9PSEU2.150e-1571.15L-threonine aldolase n=5 Tax=Lentzea TaxID=165301 ... [more]
A0A429RAR5_9ACTN2.270e-1569.23Aminotransferase class I/II-fold pyridoxal phospha... [more]
A0A1Q9E1W6_SYMMI2.560e-1573.08Putative low-specificity L-threonine aldolase 2 n=... [more]
UPI001BADD23F3.210e-1569.23aminotransferase class I/II-fold pyridoxal phospha... [more]
A0A3S9PDI1_STRLT4.570e-1571.15Aminotransferase class I/II-fold pyridoxal phospha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94930contigEcto-sp8_S_contig94930:424..579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score99.4
Seed ortholog evalue5.4e-19
Seed eggNOG ortholog2880.D7FWM2
Model size156
KEGG rclassRC00312,RC00372
KEGG koko:K01620
KEGG ReactionR00751,R06171
KEGG Pathwayko00260,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map01100,map01110,map01120,map01130,map01230
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.L-allo-threonine aldolase activity
EggNOG OGsCOG2008@1,KOG1368@2759
EC4.1.2.48
Cds size156
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145308.0008128-CDS-Ecto-sp8_S_contig94930:423..5791681145308.0008128-CDS-Ecto-sp8_S_contig94930:423..579Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94930 424..579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94930.31057.1prot_Ecto-sp8_S_contig94930.31057.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig94930 424..579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig94930.31057.1

>prot_Ecto-sp8_S_contig94930.31057.1 ID=prot_Ecto-sp8_S_contig94930.31057.1|Name=mRNA_Ecto-sp8_S_contig94930.31057.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=52bp
GARLWNAAVSLEVRPSELVSGADSVSVCLSKGLGAPVGSVLVGSEQFIYE
VR
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mRNA from alignment at Ecto-sp8_S_contig94930:424..579-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig94930.31057.1 ID=mRNA_Ecto-sp8_S_contig94930.31057.1|Name=mRNA_Ecto-sp8_S_contig94930.31057.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94930:424..579- (Ectocarpus species8 EcLAC_412)
GGCGCAAGGCTCTGGAACGCAGCGGTTTCCCTCGAGGTCCGGCCGTCGGA GCTGGTTTCCGGCGCGGACAGCGTGTCGGTCTGCCTGAGCAAGGGGCTAG GGGCACCGGTGGGGAGTGTCCTCGTGGGCTCAGAGCAGTTCATCTACGAG GTTCGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig94930:424..579-

>mRNA_Ecto-sp8_S_contig94930.31057.1 ID=mRNA_Ecto-sp8_S_contig94930.31057.1|Name=mRNA_Ecto-sp8_S_contig94930.31057.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94930:424..579- (Ectocarpus species8 EcLAC_412)
GGCGCAAGGCTCTGGAACGCAGCGGTTTCCCTCGAGGTCCGGCCGTCGGA
GCTGGTTTCCGGCGCGGACAGCGTGTCGGTCTGCCTGAGCAAGGGGCTAG
GGGCACCGGTGGGGAGTGTCCTCGTGGGCTCAGAGCAGTTCATCTACGAG
GTTCGT
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