mRNA_Ecto-sp8_S_contig9490.31052.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9490.31052.1
Unique NamemRNA_Ecto-sp8_S_contig9490.31052.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9490.31052.1 vs. uniprot
Match: D8LKP7_ECTSI (Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP7_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 2.070e-53
Identity = 149/155 (96.13%), Postives = 150/155 (96.77%), Query Frame = 1 
Query:    1 MEWDRIATAADCYNFARDTGITTAAELFLGAAKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYGSEAAEPLVVRSLAGVVERFGKFLEDFPFQSLAGEEERDGDAGVVQRDGLRHPTVDDVSGTVAARLAAEASRPLVV 465
            MEWDRIATAADCYNFARDTGI TAAELFLGA KR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYGSEAAEPLVVRSLAGVVERFGKFLEDFPFQSLAGEEERDGDAGVVQ DGLRHPTV +VSGTVAARLAAEASRPLVV
Sbjct: 1381 MEWDRIATAADCYNFARDTGIITAAELFLGAPKRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYGSEAAEPLVVRSLAGVVERFGKFLEDFPFQSLAGEEERDGDAGVVQGDGLRHPTVANVSGTVAARLAAEASRPLVV 1535
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BLAST of mRNA_Ecto-sp8_S_contig9490.31052.1 vs. uniprot
Match: A0A6H5L056_9PHAE (NUC194 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L056_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 1.660e-49
Identity = 144/155 (92.90%), Postives = 146/155 (94.19%), Query Frame = 1 
Query:    1 MEWDRIATAADCYNFARDTGITTAAELFLGAAKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYGSEAAEPLVVRSLAGVVERFGKFLEDFPFQSLAGEEERDGDAGVVQRDGLRHPTVDDVSGTVAARLAAEASRPLVV 465
            MEWDRIATAADCYNFARDTGI TAAELFLGAAKR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYGSEAAEP V+RSLAGVVERFGKFLEDFPFQSLAG EERDGDA VVQR G RHPTV +VSGTVAARLAAEAS PLVV
Sbjct: 1040 MEWDRIATAADCYNFARDTGIITAAELFLGAAKRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYGSEAAEPRVIRSLAGVVERFGKFLEDFPFQSLAGAEERDGDACVVQRGGARHPTVANVSGTVAARLAAEASGPLVV 1194
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9490.31052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKP7_ECTSI2.070e-5396.13Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5L056_9PHAE1.660e-4992.90NUC194 domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9490contigEcto-sp8_S_contig9490:163..1375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score193.7
Seed ortholog evalue6.2e-47
Seed eggNOG ortholog2880.D8LKP7
Model size465
KEGG koko:K06642,ko:K07203,ko:K08873
KEGG Pathwayko01521,ko01522,ko03015,ko03450,ko04012,ko04066,ko04072,ko04110,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map03015,map03450,map04012,map04066,map04072,map04110,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00297
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0891@2759
EC2.7.11.1
Cds size465
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03032,ko03400,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145307.7387488-CDS-Ecto-sp8_S_contig9490:162..1961681145307.7387488-CDS-Ecto-sp8_S_contig9490:162..196Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9490 163..196 -
1681145307.7524495-CDS-Ecto-sp8_S_contig9490:944..13751681145307.7524495-CDS-Ecto-sp8_S_contig9490:944..1375Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9490 945..1375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9490.31052.1prot_Ecto-sp8_S_contig9490.31052.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9490 163..1375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9490.31052.1

>prot_Ecto-sp8_S_contig9490.31052.1 ID=prot_Ecto-sp8_S_contig9490.31052.1|Name=mRNA_Ecto-sp8_S_contig9490.31052.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=155bp
MEWDRIATAADCYNFARDTGITTAAELFLGAAKRGGGGDGGVGGTSQKKS
QSSGKKRKASSAREDAAADGSGGGDSSSYGSEAAEPLVVRSLAGVVERFG
KFLEDFPFQSLAGEEERDGDAGVVQRDGLRHPTVDDVSGTVAARLAAEAS
RPLVV
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mRNA from alignment at Ecto-sp8_S_contig9490:163..1375-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9490.31052.1 ID=mRNA_Ecto-sp8_S_contig9490.31052.1|Name=mRNA_Ecto-sp8_S_contig9490.31052.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1213bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9490:163..1375- (Ectocarpus species8 EcLAC_412)
ATGGAGTGGGACAGAATCGCGACGGCCGCGGACTGCTACAACTTCGCCCG
CGACACGGGGATCACTACGGCCGCCGAGCTGTTCCTTGGAGCGGCCAAGC
GTGGCGGCGGCGGCGACGGCGGCGTCGGTGGTACCAGCCAGAAAAAGAGC
CAATCCTCCGGCAAAAAGCGGAAAGCTTCTTCTGCCCGAGAGGACGCGGC
GGCAGACGGCAGTGGCGGTGGTGACAGCTCCAGCTACGGCTCAGAAGCTG
CCGAGCCCCTCGTGGTCCGGTCGCTAGCCGGAGTCGTGGAACGTTTCGGG
AAGTTTCTCGAGGACTTCCCATTCCAATCGCTTGCTGGGGAGGAAGAGCG
TGATGGCGATGCCGGTGTCGTTCAGAGGGACGGGTTACGACATCCGACTG
TTGACGATGTCAGCGGGACGGTAGCAGCGAGGTGGGGTCCAAACGATATT
TGCTACCGCACTGTATGCATAGGTCGCGCAAGAGACCCACATCCCCTTTG
TTGATGTTACAGTCGTTCAGAATCTCCGCGGCAGAACAATCGAATTCAGA
CTGAAAAGGTAGCGCTGAAAGCAGCTGTTGGAGAGATTTCAAAATATACT
TTTCTCAGAGTTTAACACCCTTTTTTCTGACGAGACAACGATATTGGCAT
CTATCGCGATCTACGAAATTTCGTTGAGCGGTGCACGCTCTGCAGGACAC
AGCTGGGTGTTGTGTTGTTGATTCCCGCTCTTTTACCATGTTTGCACGAT
ATAATGTTCGTTGAGATTGGTAGTTTAACACCCTTGCCGCATCGAAGGGC
TTTTCAACACGTGGGCGGCTGGGGGCTGAGGAGATTCACCCAAGTGTTAG
ATCGGGGAACCACGCTCACTGGGTCGGGGAAGCAGTGGATTTGCTAGCAC
CATCCTTGGACATACGAAGTGGTATCGTTCGGTCGCACATACTGTTCTAG
GTTGCAGCGATTCCATTCACTCCACGAAGCACAGATGATTTTGTATCACG
TCCCTGTTCTCCTTCGTGTTTCGAGTCCATTCTAAAGGCCTGACAAATAG
TACCCTCCCTGTCGTGCCGAAAAGGCGTAGTTCGAACCGCTTCATGTTGT
TTTGTTCATCCCGAAACCGTTGTTATTGAGATTGACAGCCTTTTCTATAC
TCCTACGTGCCCTTTCTCCGGCGAAACAGGCTGGCCGCGGAGGCGAGTCG
ACCTCTAGTGGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9490:163..1375-

>mRNA_Ecto-sp8_S_contig9490.31052.1 ID=mRNA_Ecto-sp8_S_contig9490.31052.1|Name=mRNA_Ecto-sp8_S_contig9490.31052.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9490:163..1375- (Ectocarpus species8 EcLAC_412)
ATGGAGTGGGACAGAATCGCGACGGCCGCGGACTGCTACAACTTCGCCCG
CGACACGGGGATCACTACGGCCGCCGAGCTGTTCCTTGGAGCGGCCAAGC
GTGGCGGCGGCGGCGACGGCGGCGTCGGTGGTACCAGCCAGAAAAAGAGC
CAATCCTCCGGCAAAAAGCGGAAAGCTTCTTCTGCCCGAGAGGACGCGGC
GGCAGACGGCAGTGGCGGTGGTGACAGCTCCAGCTACGGCTCAGAAGCTG
CCGAGCCCCTCGTGGTCCGGTCGCTAGCCGGAGTCGTGGAACGTTTCGGG
AAGTTTCTCGAGGACTTCCCATTCCAATCGCTTGCTGGGGAGGAAGAGCG
TGATGGCGATGCCGGTGTCGTTCAGAGGGACGGGTTACGACATCCGACTG
TTGACGATGTCAGCGGGACGGTAGCAGCGAGGCTGGCCGCGGAGGCGAGT
CGACCTCTAGTGGTG
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