mRNA_Ecto-sp8_S_contig94876.31045.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig94876.31045.1
Unique NamemRNA_Ecto-sp8_S_contig94876.31045.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig94876.31045.1 vs. uniprot
Match: A0A6H5JL80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL80_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.690e-41
Identity = 88/110 (80.00%), Postives = 93/110 (84.55%), Query Frame = -1 
Query:    4 SSVGAGSGNGGGARSYPCHGGKFGEGGARRGESSLWRRRAPVDNRDGDGDQHGHGGDDRGPLVSRGDGSRGQQQVRGAGVERRRDGDGSGGSQGRGHQSHSRGTGERTDA 333
            SSVGA SG GG  RSYPCHG KFGEGGARRGESSLWRRRAPVDNRDGD  QH H GDDRGPLVSRGDGS GQQQ+R AGV+ RRDGDG    +G+GHQSHSRGTGER +A
Sbjct:   75 SSVGAVSGGGGEVRSYPCHG-KFGEGGARRGESSLWRRRAPVDNRDGD--QHAHCGDDRGPLVSRGDGSGGQQQIRAAGVDSRRDGDGXXXXRGQGHQSHSRGTGERMNA 181
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BLAST of mRNA_Ecto-sp8_S_contig94876.31045.1 vs. uniprot
Match: D8LHZ2_ECTSI (Denticleless homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ2_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 3.540e-29
Identity = 75/105 (71.43%), Postives = 76/105 (72.38%), Query Frame = -1 
Query:    1 SGNGGGARSYPCHGGKFGEGGARRGESSLWRRRAPVDNRDGDGDQHGHGGDDRGPLVSRGDGSRGQQQVRGAGVERRRDGDGSGGSQGRGHQSHSRGTGERTDAA 315
            SG+GGG RSYPCHG KFGEGGARRGESSLWRRRAPV NRDGD  QHGHGGD RGPLVSRGDGSR                      QGR HQSHSRGTGERTDAA
Sbjct:  582 SGSGGGVRSYPCHG-KFGEGGARRGESSLWRRRAPVGNRDGD--QHGHGGDVRGPLVSRGDGSRXXXXXXXXXXXXXXXXXXXXXXQGRDHQSHSRGTGERTDAA 683
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94876.31045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JL80_9PHAE1.690e-4180.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHZ2_ECTSI3.540e-2971.43Denticleless homolog n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94876contigEcto-sp8_S_contig94876:40..387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size348
Hectar predicted targeting categorysignal peptide
Exons1
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145307.1702662-CDS-Ecto-sp8_S_contig94876:39..3871681145307.1702662-CDS-Ecto-sp8_S_contig94876:39..387Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94876 40..387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94876.31045.1prot_Ecto-sp8_S_contig94876.31045.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig94876 40..387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig94876.31045.1

>prot_Ecto-sp8_S_contig94876.31045.1 ID=prot_Ecto-sp8_S_contig94876.31045.1|Name=mRNA_Ecto-sp8_S_contig94876.31045.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=116bp
RRVRPLARTAAVTLVAPALAAAAAVTITPALHAGAPDLLLSPGPITPGNK
GPTIITTMTVLITVTVTIVHGGPPSPQRALAAACAALSKLAAVARVRARP
PAVTATRANRRTSYDG
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mRNA from alignment at Ecto-sp8_S_contig94876:40..387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig94876.31045.1 ID=mRNA_Ecto-sp8_S_contig94876.31045.1|Name=mRNA_Ecto-sp8_S_contig94876.31045.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=348bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94876:40..387+ (Ectocarpus species8 EcLAC_412)
CGCCGCGTCCGTCCTCTCGCCCGTACCGCGGCTGTGACTCTGGTGGCCCC
GGCCCTGGCTGCCGCCGCTGCCGTCACCATCACGCCGGCGCTCCACGCCG
GCGCCCCGGACTTGCTGCTGTCCCCGGGACCCATCACCCCGGGAAACAAG
GGGCCCACGATCATCACCACCATGACCGTGCTGATCACCGTCACCGTCAC
GATTGTCCACGGGGGCCCTCCGTCTCCACAGCGAGCTCTCGCCGCGGCGT
GCGCCGCCCTCTCCAAACTTGCCGCCGTGGCAAGGGTACGAGCGCGCCCC
CCCGCCGTTACCGCTACCCGCGCCAACAGAAGAACGTCCTACGACGGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig94876:40..387+

>mRNA_Ecto-sp8_S_contig94876.31045.1 ID=mRNA_Ecto-sp8_S_contig94876.31045.1|Name=mRNA_Ecto-sp8_S_contig94876.31045.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94876:40..387+ (Ectocarpus species8 EcLAC_412)
CGCCGCGTCCGTCCTCTCGCCCGTACCGCGGCTGTGACTCTGGTGGCCCC
GGCCCTGGCTGCCGCCGCTGCCGTCACCATCACGCCGGCGCTCCACGCCG
GCGCCCCGGACTTGCTGCTGTCCCCGGGACCCATCACCCCGGGAAACAAG
GGGCCCACGATCATCACCACCATGACCGTGCTGATCACCGTCACCGTCAC
GATTGTCCACGGGGGCCCTCCGTCTCCACAGCGAGCTCTCGCCGCGGCGT
GCGCCGCCCTCTCCAAACTTGCCGCCGTGGCAAGGGTACGAGCGCGCCCC
CCCGCCGTTACCGCTACCCGCGCCAACAGAAGAACGTCCTACGACGGC
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