mRNA_Ecto-sp8_S_contig94865.31043.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig94865.31043.1
Unique NamemRNA_Ecto-sp8_S_contig94865.31043.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig94865.31043.1 vs. uniprot
Match: D8LJX3_ECTSI (Pathogenesis-related protein, class 1 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX3_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 4.130e-41
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 MCWGSDSCYSHEKAMEGLYYDEVQFDSVLQYGGHATQILWKATEQVGCVLARCTNGGTPYTFLVCQ 198
            MCWGSDSCYSHEKAMEGLYYDEVQFDSVLQYGGHATQILWKATEQVGCV+ARCTNGGTPYTFLVCQ
Sbjct:  403 MCWGSDSCYSHEKAMEGLYYDEVQFDSVLQYGGHATQILWKATEQVGCVVARCTNGGTPYTFLVCQ 468
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BLAST of mRNA_Ecto-sp8_S_contig94865.31043.1 vs. uniprot
Match: A0A6H5JZI7_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI7_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 6.670e-39
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 MCWGSDSCYSHEKAMEGLYYDEVQFDSVLQYGGHATQILWKATEQVGCVLARCTNGGTPYTFLVCQ 198
            MCWGSDSCYSHE+AMEGLYYDEVQ DSVLQYGGHATQILWK+TEQVGCV+ARCTNGGTPY FLVCQ
Sbjct:  302 MCWGSDSCYSHERAMEGLYYDEVQSDSVLQYGGHATQILWKSTEQVGCVVARCTNGGTPYMFLVCQ 367
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BLAST of mRNA_Ecto-sp8_S_contig94865.31043.1 vs. uniprot
Match: A0A6H5JCL1_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCL1_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 3.400e-33
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    7 WGSDSCYSHEKAMEGLYYDEVQFDSVLQYGGHATQILWKATEQVGCVLARCTNGGTPYTFLVCQ 198
            WGSDSCYSH+KA +GLYYDEVQ DSVLQYGGHATQILWKA EQVGC  ARCTNGGTP+ FLVCQ
Sbjct:  280 WGSDSCYSHKKATKGLYYDEVQSDSVLQYGGHATQILWKAAEQVGCAGARCTNGGTPHAFLVCQ 343
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BLAST of mRNA_Ecto-sp8_S_contig94865.31043.1 vs. uniprot
Match: A0A6H5KK50_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK50_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 9.650e-32
Identity = 50/66 (75.76%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 MCWGSDSCYSHEKAMEGLYYDEVQFDSVLQYGGHATQILWKATEQVGCVLARCTNGGTPYTFLVCQ 198
            MCWG+D+CY+HE AME LY +EVQF +V  Y GHATQILWK+T++VGCVLA+CTNGGTPYTFLVCQ
Sbjct:  141 MCWGTDTCYNHEYAMEKLYVEEVQFGAVTDYIGHATQILWKSTKKVGCVLAQCTNGGTPYTFLVCQ 206
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BLAST of mRNA_Ecto-sp8_S_contig94865.31043.1 vs. uniprot
Match: D8LJW7_ECTSI (Pathogenesis-related protein, class 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW7_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.380e-29
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 MCWGSDSCYSHEKAMEGLYYDEVQFDSVLQYGGHATQILWKATEQVGCVLARCTNGGTPYTFLVCQ 198
            +CWG+D+CY+H+ AME LY +EVQFD V  Y GHATQILWK+T+ VGCVLA C+NGGTPYTFLVCQ
Sbjct:  228 VCWGTDTCYNHDYAMEHLYVEEVQFDDVTDYIGHATQILWKSTKNVGCVLAGCSNGGTPYTFLVCQ 293
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94865.31043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LJX3_ECTSI4.130e-4198.48Pathogenesis-related protein, class 1 n=3 Tax=Ecto... [more]
A0A6H5JZI7_9PHAE6.670e-3992.42SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JCL1_9PHAE3.400e-3385.94SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KK50_9PHAE9.650e-3275.76SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJW7_ECTSI1.380e-2972.73Pathogenesis-related protein, class 1 n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94865contigEcto-sp8_S_contig94865:3..437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score148.3
Seed ortholog evalue1.3e-33
Seed eggNOG ortholog2880.D8LJW8
Model size198
KEGG koko:K19919,ko:K20412
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.peptidase inhibitor activity
EggNOG OGsCOG2340@1,KOG3017@2759
Cds size198
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04090,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145307.0813968-CDS-Ecto-sp8_S_contig94865:2..1451681145307.0813968-CDS-Ecto-sp8_S_contig94865:2..145Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94865 3..145 -
1681145307.0968974-CDS-Ecto-sp8_S_contig94865:382..4371681145307.0968974-CDS-Ecto-sp8_S_contig94865:382..437Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94865 383..437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94865.31043.1prot_Ecto-sp8_S_contig94865.31043.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig94865 3..437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig94865.31043.1

>prot_Ecto-sp8_S_contig94865.31043.1 ID=prot_Ecto-sp8_S_contig94865.31043.1|Name=mRNA_Ecto-sp8_S_contig94865.31043.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=66bp
MCWGSDSCYSHEKAMEGLYYDEVQFDSVLQYGGHATQILWKATEQVGCVL
ARCTNGGTPYTFLVCQ
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mRNA from alignment at Ecto-sp8_S_contig94865:3..437-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig94865.31043.1 ID=mRNA_Ecto-sp8_S_contig94865.31043.1|Name=mRNA_Ecto-sp8_S_contig94865.31043.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=435bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94865:3..437- (Ectocarpus species8 EcLAC_412)
ATGTGCTGGGGGTCGGACTCGTGCTACTCGCACGAGAAGGCGATGGAGGG
ACTATGTAAGTGTTGTTTCGCGCGCTGGCTAGGCCCTTGTCGCTTGACGA
TGAGCGGCAGCAGTGAGGAAATATGCAGTAGGCATGTTTCGCACCACATG
CGGCGCCCCCTCTTTTTTCTGTGTCACGGACCTGACAATCCTCCACGTAT
GCCCGTATCTCGCCTTATAAGTTGCTGGGTGCAACGATGCATATCCTGAC
CCCCCCCCCCCATCTCTCCTTCTCCCCAACGTGCGCAAACAGACTACGAC
GAAGTCCAGTTCGACAGTGTTCTCCAGTACGGTGGTCACGCGACCCAGAT
CCTGTGGAAGGCTACGGAGCAAGTCGGATGCGTCTTGGCGCGGTGCACCA
ACGGCGGAACCCCCTACACGTTCCTCGTGTGCCAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig94865:3..437-

>mRNA_Ecto-sp8_S_contig94865.31043.1 ID=mRNA_Ecto-sp8_S_contig94865.31043.1|Name=mRNA_Ecto-sp8_S_contig94865.31043.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94865:3..437- (Ectocarpus species8 EcLAC_412)
ATGTGCTGGGGGTCGGACTCGTGCTACTCGCACGAGAAGGCGATGGAGGG
ACTATACTACGACGAAGTCCAGTTCGACAGTGTTCTCCAGTACGGTGGTC
ACGCGACCCAGATCCTGTGGAAGGCTACGGAGCAAGTCGGATGCGTCTTG
GCGCGGTGCACCAACGGCGGAACCCCCTACACGTTCCTCGTGTGCCAG
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