mRNA_Ecto-sp8_S_contig9482.31032.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9482.31032.1
Unique NamemRNA_Ecto-sp8_S_contig9482.31032.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9482.31032.1 vs. uniprot
Match: D8LQT2_ECTSI (Robl_LC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQT2_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 1.370e-40
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 1
Query:   16 GIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHESFTLVVVQK 225
            GIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHESFTLVVVQ+
Sbjct:   32 GIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHESFTLVVVQQ 101          
BLAST of mRNA_Ecto-sp8_S_contig9482.31032.1 vs. uniprot
Match: A0A835ZE71_9STRA (Robl_LC7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE71_9STRA)

HSP 1 Score: 119 bits (298), Expect = 4.210e-33
Identity = 56/70 (80.00%), Postives = 64/70 (91.43%), Query Frame = 1
Query:   16 GIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHESFTLVVVQK 225
            GIVIKYESM Y+ AVHHAALVLDL +K KKYMRE+FEPPDN+VESLRLRT EHEMI+A HE+FTLVV+Q+
Sbjct:   37 GIVIKYESMSYQTAVHHAALVLDLVAKGKKYMREMFEPPDNEVESLRLRTEEHEMIVAQHENFTLVVIQE 106          
BLAST of mRNA_Ecto-sp8_S_contig9482.31032.1 vs. uniprot
Match: A0A7S2XUU9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUU9_9STRA)

HSP 1 Score: 113 bits (282), Expect = 9.600e-31
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 1
Query:   16 GIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHESFTLVVVQK 225
            GIVIKYE+MEY+ AVHHA LVLDL +KSKKY+RELFEPPDN+VESLRLRT ++EMIIA H +FTL V+QK
Sbjct:   32 GIVIKYENMEYKTAVHHAHLVLDLCTKSKKYIRELFEPPDNEVESLRLRTADYEMIIAQHGNFTLTVLQK 101          
BLAST of mRNA_Ecto-sp8_S_contig9482.31032.1 vs. uniprot
Match: A0A6V1PEV3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PEV3_HETAK)

HSP 1 Score: 107 bits (266), Expect = 2.680e-28
Identity = 50/70 (71.43%), Postives = 63/70 (90.00%), Query Frame = 1
Query:   16 GIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHESFTLVVVQK 225
            GIVIK E+MEY+ AVHHA LVLDL +KS+KYMR+L +PPDN+VES+RLRT ++EMIIA H++FTLVV+QK
Sbjct:   32 GIVIKCENMEYKTAVHHAHLVLDLCAKSRKYMRDLLDPPDNEVESIRLRTIDYEMIIAQHDNFTLVVIQK 101          
BLAST of mRNA_Ecto-sp8_S_contig9482.31032.1 vs. uniprot
Match: A0A7S1XSZ1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSZ1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 3.840e-23
Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 1
Query:   16 GIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHESFTLVVVQ 222
            GIVIK+E+M+YR+A+  A LVLDL +KSKKY+RELFE PDN+VESLRLR+   E+I+A H SFTLVV Q
Sbjct:   32 GIVIKWENMQYRSAIQCAHLVLDLVAKSKKYIRELFEVPDNEVESLRLRSKNFELIVAQHGSFTLVVKQ 100          
BLAST of mRNA_Ecto-sp8_S_contig9482.31032.1 vs. uniprot
Match: A0A7S2SQX1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQX1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.590e-23
Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 1
Query:   16 GIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHESFTLVVVQ 222
            GIVIKYE+M+ + AV  A LVLDL +KSKKY++ELFEPPDNDVESLRL+T E EMI+A +  ++LVVVQ
Sbjct:   32 GIVIKYENMDVQKAVQTAHLVLDLCAKSKKYIKELFEPPDNDVESLRLKTLEFEMIVAQYGDYSLVVVQ 100          
BLAST of mRNA_Ecto-sp8_S_contig9482.31032.1 vs. uniprot
Match: A0A7S2C4Y6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C4Y6_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.840e-21
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1
Query:   16 GIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHESFTLVVVQ 222
            GIVIKYE M+Y  AV HA LVLDL +KSK Y R +FE P+N+VES+RL+T E EMII+  ++FTLV++Q
Sbjct:   32 GIVIKYEGMDYSRAVQHAYLVLDLCAKSKSYFRGMFEAPENEVESIRLKTNEFEMIISQIQNFTLVMIQ 100          
BLAST of mRNA_Ecto-sp8_S_contig9482.31032.1 vs. uniprot
Match: W7TDN2_9STRA (Dynein light chain n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDN2_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.880e-17
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   16 GIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHESFTLVVVQK 225
            GIVIKYE++EY+ AV  A LVLDLASK+K+  R L E P+N+VES+RL++ ++E+I+    +FTL VVQ 
Sbjct:   37 GIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQN 106          
BLAST of mRNA_Ecto-sp8_S_contig9482.31032.1 vs. uniprot
Match: H3H539_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H539_PHYRM)

HSP 1 Score: 78.6 bits (192), Expect = 3.280e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 1
Query:   16 GIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELF-EPPDNDVESLRLRTGEHEMIIALHESFTLVVVQK 225
            GIV+KYE++EY+ A+ HA  VL L  ++KK++++LF +P D+++E LRLRT  HEMIIA H  FTLVV+Q+
Sbjct:    5 GIVVKYENVEYKEAIMHAYHVLSLYGRTKKHLQKLFPDPSDSEIEWLRLRTKMHEMIIAQHLRFTLVVLQQ 75          
BLAST of mRNA_Ecto-sp8_S_contig9482.31032.1 vs. uniprot
Match: H3H541_PHYRM (Robl_LC7 domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=H3H541_PHYRM)

HSP 1 Score: 78.6 bits (192), Expect = 6.530e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 1
Query:   16 GIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELF-EPPDNDVESLRLRTGEHEMIIALHESFTLVVVQK 225
            GIV+KYE++EY+ A+ HA  VL L  ++KK++++LF +P D+++E LRLRT  HEMIIA H  FTLVV+Q+
Sbjct:   32 GIVVKYENVEYKEAIMHAYHVLSLYGRTKKHLQKLFPDPSDSEIEWLRLRTKMHEMIIAQHLRFTLVVLQQ 102          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9482.31032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LQT2_ECTSI1.370e-4098.57Robl_LC7 domain-containing protein n=1 Tax=Ectocar... [more]
A0A835ZE71_9STRA4.210e-3380.00Robl_LC7 domain-containing protein n=1 Tax=Tribone... [more]
A0A7S2XUU9_9STRA9.600e-3177.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1PEV3_HETAK2.680e-2871.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1XSZ1_9STRA3.840e-2368.12Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2SQX1_9STRA5.590e-2368.12Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2C4Y6_9STRA1.840e-2162.32Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7TDN2_9STRA1.880e-1755.71Dynein light chain n=1 Tax=Nannochloropsis gaditan... [more]
H3H539_PHYRM3.280e-1754.93Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
H3H541_PHYRM6.530e-1754.93Robl_LC7 domain-containing protein n=19 Tax=Phytop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9482contigEcto-sp8_S_contig9482:694..1500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score137.9
Seed ortholog evalue2e-30
Seed eggNOG ortholog2880.D8LQT2
Model size231
KEGG koko:K10419
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.dynein intermediate chain binding
EggNOG OGsKOG4115@1,KOG4115@2759
Ec32 ortholog descriptionDynein light chain-related
Ec32 orthologEc-24_002180.1
Cds size231
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145306.5101852-CDS-Ecto-sp8_S_contig9482:693..8281681145306.5101852-CDS-Ecto-sp8_S_contig9482:693..828Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9482 694..828 +
1681145306.5234735-CDS-Ecto-sp8_S_contig9482:1404..15001681145306.5234735-CDS-Ecto-sp8_S_contig9482:1404..1500Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9482 1405..1500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9482.31032.1prot_Ecto-sp8_S_contig9482.31032.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9482 694..1500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9482.31032.1

>prot_Ecto-sp8_S_contig9482.31032.1 ID=prot_Ecto-sp8_S_contig9482.31032.1|Name=mRNA_Ecto-sp8_S_contig9482.31032.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=77bp
MTPLAGIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVES
LRLRTGEHEMIIALHESFTLVVVQKV*
back to top

mRNA from alignment at Ecto-sp8_S_contig9482:694..1500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9482.31032.1 ID=mRNA_Ecto-sp8_S_contig9482.31032.1|Name=mRNA_Ecto-sp8_S_contig9482.31032.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=807bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9482:694..1500+ (Ectocarpus species8 EcLAC_412)
ATGACGCCGCTTGCAGGGATTGTGATCAAGTACGAGAGCATGGAGTACCG AGCGGCCGTGCACCACGCGGCGTTGGTGCTTGACCTCGCCAGCAAATCGA AGAAGTACATGCGAGAACTCTTCGAGCCACCGGACGTGAGACTTTTTGCT CTGCACGCACATTTTTCGCCTGCCCTGTCCGCTCAACACTGGTATGTGGC TGCCGGCCTCATCGCCTTGCTTCACAACGAGTTCCGCCGCAAGTGCTGGG CAGCTGTAGTTCCTTGTGCGCTGCTGCTATGCTACCGTTGGCGCAGCCGT GAGTTTCCCTGGACCTGCGATGACAGACAACCGCCAAGCCAGCAATAATG AATGGCTTGCTCGCAAAAGCCTGCTCCGACATCAAGAGAGGAGTCGGATT GTTGCGTTGACAACTACATGAAATGTCAGCCAGCCTTTGTTTCCTAGGTA ATTTCAGCTGTTAGCATTGAAAAGCAGACAAGCTAATATTTTTTTTCTGG GACCTCATCCACCTCTTGTTTTCCTGTATGTTCTCCTCGCTTCCGCCTGA TCTATTTTCCACGCGCGCAGCTTTCCGCTCCCTCTCAAACGCACAACTCC CCTCCTTCTCTCTCTCTCTCTCGCTTGTCTCTCTCTGTCTCTCTCTCTTT CGCACACGACGCGCGAATGGTTTTTCGTCCGCCCATCCCCCGCGGATACA CGCACCCGTAGAACGACGTGGAATCATTGCGGCTGAGAACAGGGGAGCAC GAGATGATCATCGCCTTGCATGAGAGTTTCACCCTGGTAGTCGTTCAAAA GGTATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9482:694..1500+

>mRNA_Ecto-sp8_S_contig9482.31032.1 ID=mRNA_Ecto-sp8_S_contig9482.31032.1|Name=mRNA_Ecto-sp8_S_contig9482.31032.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9482:694..1500+ (Ectocarpus species8 EcLAC_412)
ATGACGCCGCTTGCAGGGATTGTGATCAAGTACGAGAGCATGGAGTACCG
AGCGGCCGTGCACCACGCGGCGTTGGTGCTTGACCTCGCCAGCAAATCGA
AGAAGTACATGCGAGAACTCTTCGAGCCACCGGACAACGACGTGGAATCA
TTGCGGCTGAGAACAGGGGAGCACGAGATGATCATCGCCTTGCATGAGAG
TTTCACCCTGGTAGTCGTTCAAAAGGTATGA
back to top