mRNA_Ecto-sp8_S_contig948.31028.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig948.31028.1
Unique NamemRNA_Ecto-sp8_S_contig948.31028.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig948.31028.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 1.590e-67
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 MGNPFQATADVISHASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGLSPGRTAVCTAIASLGRLDLLRAARALGFRWDKMTCWKAA 312
            MGNPFQATADVISHASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGLSPG TAVCTAIASLGRLDLLRAARALGFRWDKMTCWKAA
Sbjct:    1 MGNPFQATADVISHASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGLSPGGTAVCTAIASLGRLDLLRAARALGFRWDKMTCWKAA 104
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BLAST of mRNA_Ecto-sp8_S_contig948.31028.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.150e-26
Identity = 55/95 (57.89%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:   19 ATADVISHASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGLSPGRTA-VCTAIASLGRLDLLRAARALGFRWDKMTC 300
            A  D++S  +EFV D+Q+LFFASVSR WR  W  RPT T+A+T DTS  QL  S +CGL   RTA VC  +A LGRLDLLR ARA+G +W++ TC
Sbjct:    5 AAVDIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLR--RTAAVCETVAGLGRLDLLRRARAMGCQWNENTC 97
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BLAST of mRNA_Ecto-sp8_S_contig948.31028.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.190e-25
Identity = 56/96 (58.33%), Postives = 68/96 (70.83%), Query Frame = 1 
Query:   19 ATADVISHASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGLSPGRTA-VCTAIASLGRLDLLRAARALGFRWDKMTCW 303
            A  D++S   EFV D+Q+LFFASVSR WR  W  RPT T+A+T DTS SQL  S +CGL   RTA VC  +A LGRLDLLR ARA+G  W++ TC+
Sbjct:    7 AAVDIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLR--RTAAVCETVAGLGRLDLLRRARAMGCPWNENTCY 100
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BLAST of mRNA_Ecto-sp8_S_contig948.31028.1 vs. uniprot
Match: A0A6H5JM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM75_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.360e-22
Identity = 53/101 (52.48%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:    1 MGNPFQATADVISHASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGLSPGRTAVCTAIASLGRLDLLRAARALG-FRWDKMTC 300
            M NP     D++    EFV  +Q++FFA VSR WR AW GRPT+TRA T DT   QL  S  CGL+P R+ VC  IA+LGRLDLL +AR      WD+ TC
Sbjct:    1 MPNPLMQP-DIVFRLMEFVGGEQYIFFAGVSRTWRDAWEGRPTTTRAFTADTGVPQLSQSFKCGLAP-RSTVCRDIAALGRLDLLVSAREQHECPWDEETC 99
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BLAST of mRNA_Ecto-sp8_S_contig948.31028.1 vs. uniprot
Match: D7G8W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.450e-20
Identity = 49/85 (57.65%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:   49 EFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGLSPGRTAVCTAIASLGRLDLLRAARA-LGFRWDKMTC 300
            EFV  +Q+LFFA VSR WR AW GRPT+TRA+T DT   QL  S +CGL+  R+ VC  IA+LGRLDLL +AR      WD+ TC
Sbjct:    2 EFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLAR-RSTVCQDIAALGRLDLLVSAREEYECPWDEDTC 85
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BLAST of mRNA_Ecto-sp8_S_contig948.31028.1 vs. uniprot
Match: D7G822_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G822_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 2.990e-12
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:   40 HASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGL--SPGRTAVCTAIASLGRLDLLRAARALGFRWDKMTC 300
            + +EFV  DQ+LF A VS+A+R AW  R T TR +  DTS  QL + ++ GL  S  +  +C A A  GRLDLL+ A+     W   TC
Sbjct:    3 YLAEFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLAQESACGWTPATC 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig948.31028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LDD9_ECTSI1.590e-6799.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L0J7_9PHAE2.150e-2657.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS7_ECTSI1.190e-2558.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM75_9PHAE3.360e-2252.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8W5_ECTSI2.450e-2057.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G822_ECTSI2.990e-1243.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig948contigEcto-sp8_S_contig948:2..484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score73.6
Seed ortholog evalue9.7e-11
Seed eggNOG ortholog2880.D7FJY0
Model size483
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2AMK4@1,2RZCC@2759
Cds size483
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145306.2075377-CDS-Ecto-sp8_S_contig948:1..4841681145306.2075377-CDS-Ecto-sp8_S_contig948:1..484Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig948 2..484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig948.31028.1prot_Ecto-sp8_S_contig948.31028.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig948 2..484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig948.31028.1

>prot_Ecto-sp8_S_contig948.31028.1 ID=prot_Ecto-sp8_S_contig948.31028.1|Name=mRNA_Ecto-sp8_S_contig948.31028.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=161bp
MGNPFQATADVISHASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITP
DTSPSQLRHSVDCGLSPGRTAVCTAIASLGRLDLLRAARALGFRWDKMTC
WKAAEGGHLDVLRHARANGCGWNVLTCAGAAKGGHLEVLAWARQNGCGWD
EWTCTAATKEG
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mRNA from alignment at Ecto-sp8_S_contig948:2..484-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig948.31028.1 ID=mRNA_Ecto-sp8_S_contig948.31028.1|Name=mRNA_Ecto-sp8_S_contig948.31028.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=483bp|location=Sequence derived from alignment at Ecto-sp8_S_contig948:2..484- (Ectocarpus species8 EcLAC_412)
ATGGGAAACCCCTTCCAAGCCACCGCCGACGTCATCTCCCACGCCTCGGA
GTTCGTCCACGACGACCAGTTTCTCTTCTTCGCCTCCGTGTCGAGGGCGT
GGAGGGGCGCCTGGCGCGGCCGCCCGACTTCAACCAGAGCCATCACCCCG
GACACCTCGCCGAGCCAGCTGCGGCACAGCGTCGACTGCGGCCTCTCTCC
GGGGCGCACCGCAGTATGCACCGCGATCGCCTCCCTGGGCAGGCTCGACC
TCCTGCGGGCCGCCCGCGCGCTGGGCTTCCGGTGGGACAAGATGACCTGC
TGGAAGGCCGCAGAGGGGGGCCACCTCGACGTGCTCCGCCACGCCCGAGC
CAACGGTTGCGGCTGGAACGTCCTGACCTGCGCGGGGGCGGCCAAGGGCG
GCCACCTCGAGGTCCTGGCTTGGGCGCGGCAGAACGGCTGCGGCTGGGAC
GAGTGGACGTGCACGGCGGCGACGAAGGAGGGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig948:2..484-

>mRNA_Ecto-sp8_S_contig948.31028.1 ID=mRNA_Ecto-sp8_S_contig948.31028.1|Name=mRNA_Ecto-sp8_S_contig948.31028.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp8_S_contig948:2..484- (Ectocarpus species8 EcLAC_412)
ATGGGAAACCCCTTCCAAGCCACCGCCGACGTCATCTCCCACGCCTCGGA
GTTCGTCCACGACGACCAGTTTCTCTTCTTCGCCTCCGTGTCGAGGGCGT
GGAGGGGCGCCTGGCGCGGCCGCCCGACTTCAACCAGAGCCATCACCCCG
GACACCTCGCCGAGCCAGCTGCGGCACAGCGTCGACTGCGGCCTCTCTCC
GGGGCGCACCGCAGTATGCACCGCGATCGCCTCCCTGGGCAGGCTCGACC
TCCTGCGGGCCGCCCGCGCGCTGGGCTTCCGGTGGGACAAGATGACCTGC
TGGAAGGCCGCAGAGGGGGGCCACCTCGACGTGCTCCGCCACGCCCGAGC
CAACGGTTGCGGCTGGAACGTCCTGACCTGCGCGGGGGCGGCCAAGGGCG
GCCACCTCGAGGTCCTGGCTTGGGCGCGGCAGAACGGCTGCGGCTGGGAC
GAGTGGACGTGCACGGCGGCGACGAAGGAGGGT
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