mRNA_Ecto-sp8_S_contig94781.31024.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig94781.31024.1
Unique NamemRNA_Ecto-sp8_S_contig94781.31024.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig94781.31024.1 vs. uniprot
Match: D8LGI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGI6_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 2.590e-21
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 IDATMERRICTAVLKQLDDNSNDVQTIAVKCLGALLRKVQEAQV 132
            IDATMERRICTAVLKQLDDNSNDVQTIAVKCLGALLRKVQEAQV
Sbjct:   50 IDATMERRICTAVLKQLDDNSNDVQTIAVKCLGALLRKVQEAQV 93
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BLAST of mRNA_Ecto-sp8_S_contig94781.31024.1 vs. uniprot
Match: W7U372_9STRA (Cullin-associated nedd8-dissociated protein 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U372_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.540e-14
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 IDATMERRICTAVLKQLDDNSNDVQTIAVKCLGALLRKVQEAQV 132
            +D TMERRIC AVLKQLDD SNDVQ+IAVKCLG L RKVQE QV
Sbjct:   38 LDVTMERRICQAVLKQLDDASNDVQSIAVKCLGILFRKVQEMQV 81
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BLAST of mRNA_Ecto-sp8_S_contig94781.31024.1 vs. uniprot
Match: A0A4D9CVN5_9STRA (DAO domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVN5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.560e-14
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 IDATMERRICTAVLKQLDDNSNDVQTIAVKCLGALLRKVQEAQV 132
            +D TMERRIC AVLKQLDD SNDVQ+IAVKCLG L RKVQE QV
Sbjct:  425 LDVTMERRICQAVLKQLDDASNDVQSIAVKCLGILFRKVQEMQV 468
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BLAST of mRNA_Ecto-sp8_S_contig94781.31024.1 vs. uniprot
Match: A0A7S1UCJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCJ9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.580e-13
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 IDATMERRICTAVLKQLDDNSNDVQTIAVKCLGALLRKVQEAQV 132
            +D  MERRIC AVLKQLDD+SNDVQ+IAVKCLG LL+KVQ  QV
Sbjct:   38 LDVVMERRICAAVLKQLDDSSNDVQSIAVKCLGILLKKVQHEQV 81
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BLAST of mRNA_Ecto-sp8_S_contig94781.31024.1 vs. uniprot
Match: A0A8J2X381_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X381_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.640e-13
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 IDATMERRICTAVLKQLDDNSNDVQTIAVKCLGALLRKVQEAQV 132
            +DA MERR+C AVL+QLDD S DVQ+IAVKCLG LL+KV+EAQV
Sbjct:   39 LDAAMERRVCAAVLRQLDDKSTDVQSIAVKCLGVLLKKVREAQV 82
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BLAST of mRNA_Ecto-sp8_S_contig94781.31024.1 vs. uniprot
Match: A0A835Z0R5_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0R5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.470e-13
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 IDATMERRICTAVLKQLDDNSNDVQTIAVKCLGALLRKVQEAQV 132
            I+  +ERR+C AVLKQLDD+SNDVQ IAVKCLG LL+KVQEAQV
Sbjct:   41 IEPQLERRVCAAVLKQLDDSSNDVQGIAVKCLGILLKKVQEAQV 84
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BLAST of mRNA_Ecto-sp8_S_contig94781.31024.1 vs. uniprot
Match: A0A7S2B5F1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B5F1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.240e-12
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 IDATMERRICTAVLKQLDDNSNDVQTIAVKCLGALLRKVQEAQV 132
            +DA+ME+RIC AVLK+LDD SNDVQ+ A++CL  LL+KVQEAQV
Sbjct:    2 MDASMEQRICAAVLKRLDDPSNDVQSKAIQCLAILLKKVQEAQV 45
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BLAST of mRNA_Ecto-sp8_S_contig94781.31024.1 vs. uniprot
Match: A0A024TMU3_9STRA (TIP120 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TMU3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.860e-11
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 IDATMERRICTAVLKQLDDNSNDVQTIAVKCLGALLRKVQEAQV 132
            I   +ER+IC AVLKQLDD SNDVQ+IAVKCLG L+ KVQE QV
Sbjct:   40 IGPDLERKICAAVLKQLDDKSNDVQSIAVKCLGILVTKVQEKQV 83
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BLAST of mRNA_Ecto-sp8_S_contig94781.31024.1 vs. uniprot
Match: A0A1V9ZD09_9STRA (Cullin-associated NEDD8-dissociated protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZD09_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.900e-11
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   13 MERRICTAVLKQLDDNSNDVQTIAVKCLGALLRKVQEAQV 132
            +ER+IC AVLKQLDD SNDVQ+IAVKCLG L+ KVQE QV
Sbjct: 2043 LERKICAAVLKQLDDKSNDVQSIAVKCLGILVTKVQEKQV 2082
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BLAST of mRNA_Ecto-sp8_S_contig94781.31024.1 vs. uniprot
Match: A0A7S3NKS9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKS9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.910e-11
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 IDATMERRICTAVLKQLDDNSNDVQTIAVKCLGALLRKVQEAQV 132
            +D TMERRIC A LKQLDD S+DVQ+I+VK LG LL+KV +AQV
Sbjct:    1 MDVTMERRICAAALKQLDDQSSDVQSISVKALGVLLKKVHKAQV 44
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94781.31024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGI6_ECTSI2.590e-21100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7U372_9STRA5.540e-1481.82Cullin-associated nedd8-dissociated protein 1 n=1 ... [more]
A0A4D9CVN5_9STRA5.560e-1481.82DAO domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S1UCJ9_9STRA2.580e-1377.27Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A8J2X381_9STRA2.640e-1375.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835Z0R5_9STRA3.470e-1377.27Armadillo-type protein (Fragment) n=1 Tax=Tribonem... [more]
A0A7S2B5F1_9STRA1.240e-1270.45Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A024TMU3_9STRA2.860e-1172.73TIP120 domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A1V9ZD09_9STRA3.900e-1177.50Cullin-associated NEDD8-dissociated protein (Fragm... [more]
A0A7S3NKS9_9STRA3.910e-1170.45Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94781contigEcto-sp8_S_contig94781:275..406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score80.5
Seed ortholog evalue2e-13
Seed eggNOG ortholog2880.D8LGI6
Preferred nameCAND1
Model size132
KEGG koko:K09490,ko:K17263
KEGG TC1.A.33
KEGG Pathwayko03060,ko04141,ko04918,ko05020,map03060,map04141,map04918,map05020
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000151,GO:0000909,GO:0003002,GO:0003006,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0009404,GO:0009653,GO:0009712,GO:0009719,GO:0009725,GO:0009733,GO:0009791,GO:0009987,GO:0010033,GO:0010051,GO:0010228,GO:0010265,GO:0016020,GO:0016043,GO:0016567,GO:0016999,GO:0017144,GO:0018904,GO:0018940,GO:0018958,GO:0019538,GO:0019748,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0030312,GO:0030435,GO:0030582,GO:0030584,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034293,GO:0036211,GO:0042221,GO:0042537,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043385,GO:0043412,GO:0043933,GO:0043934,GO:0043935,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050790,GO:0050896,GO:0051321,GO:0051704,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070647,GO:0071704,GO:0071840,GO:0071944,GO:0072490,GO:0075259,GO:1900570,GO:1900588,GO:1900591,GO:1900797,GO:1901360,GO:1901564,GO:1901615,GO:1902494,GO:1903046,GO:1990234
Exons1
EggNOG free text desc.SCF complex assembly
EggNOG OGsKOG1824@1,KOG1824@2759
Cds size120
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145306.0022125-CDS-Ecto-sp8_S_contig94781:274..3941681145306.0022125-CDS-Ecto-sp8_S_contig94781:274..394Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94781 275..394 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145306.0183444-UTR-Ecto-sp8_S_contig94781:394..4061681145306.0183444-UTR-Ecto-sp8_S_contig94781:394..406Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig94781 395..406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94781.31024.1prot_Ecto-sp8_S_contig94781.31024.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig94781 275..394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig94781.31024.1

>prot_Ecto-sp8_S_contig94781.31024.1 ID=prot_Ecto-sp8_S_contig94781.31024.1|Name=mRNA_Ecto-sp8_S_contig94781.31024.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=40bp
MERRICTAVLKQLDDNSNDVQTIAVKCLGALLRKVQEAQV
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mRNA from alignment at Ecto-sp8_S_contig94781:275..406-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig94781.31024.1 ID=mRNA_Ecto-sp8_S_contig94781.31024.1|Name=mRNA_Ecto-sp8_S_contig94781.31024.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=132bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94781:275..406- (Ectocarpus species8 EcLAC_412)
ATCGACGCCACCATGGAGAGGCGTATCTGTACCGCTGTGCTGAAGCAGCT
GGATGACAACAGCAACGACGTGCAGACCATTGCCGTCAAGTGCCTTGGCG
CTCTACTGCGCAAGGTTCAAGAGGCCCAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig94781:275..406-

>mRNA_Ecto-sp8_S_contig94781.31024.1 ID=mRNA_Ecto-sp8_S_contig94781.31024.1|Name=mRNA_Ecto-sp8_S_contig94781.31024.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=120bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94781:275..406- (Ectocarpus species8 EcLAC_412)
ATGGAGAGGCGTATCTGTACCGCTGTGCTGAAGCAGCTGGATGACAACAG
CAACGACGTGCAGACCATTGCCGTCAAGTGCCTTGGCGCTCTACTGCGCA
AGGTTCAAGAGGCCCAGGTA
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