mRNA_Ecto-sp8_S_contig9476.31021.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9476.31021.1
Unique NamemRNA_Ecto-sp8_S_contig9476.31021.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9476.31021.1 vs. uniprot
Match: D7FV48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV48_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 5.520e-42
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 1
Query:    1 QSDAAHETAVGEVRSELRLKSFELSQLGVAHAEKCSSLRQAGLEVDMLKEQVAVHRAEFAELEASTTRKTSELQLLLVGERDKV 252
            +SDAAHETAVGEVRSELRLKSFELSQLGVAHAEKCSSLRQAGLEVDMLKEQVAVHRAEFAELEASTTRKTSELQLLLVGERDKV
Sbjct:  660 KSDAAHETAVGEVRSELRLKSFELSQLGVAHAEKCSSLRQAGLEVDMLKEQVAVHRAEFAELEASTTRKTSELQLLLVGERDKV 743          
BLAST of mRNA_Ecto-sp8_S_contig9476.31021.1 vs. uniprot
Match: A0A485LEL3_9STRA (Aste57867_20200 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LEL3_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.160e-15
Identity = 41/82 (50.00%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    7 DAAHETAVGEVRSELRLKSFELSQLGVAHAEKCSSLRQAGLEVDMLKEQVAVHRAEFAELEASTTRKTSELQLLLVGERDKV 252
            DA   T V E+R+++++K FEL+QLG  + EK + L QA LE +MLK++V VH+ EFA+LEASTT + ++L+L L  ERD++
Sbjct:  494 DAKWATDVAELRNDVKMKHFELAQLGRNYEEKATMLHQAHLESEMLKQKVEVHKTEFAKLEASTTNRMAQLELALAFERDRL 575          
BLAST of mRNA_Ecto-sp8_S_contig9476.31021.1 vs. uniprot
Match: A0A024TME5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TME5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.670e-13
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    7 DAAHETAVGEVRSELRLKSFELSQLGVAHAEKCSSLRQAGLEVDMLKEQVAVHRAEFAELEASTTRKTSELQLLLVGERDKV 252
            DA   T +  VR++L++K FEL+QLG    EK   L QA LE DMLK++V VH+A FA+LEA+T ++ +ELQ+ +  ER+K+
Sbjct:  500 DAKATTELAAVRNDLKIKHFELAQLGRQFDEKSQQLHQAHLENDMLKQKVDVHKAGFAKLEATTGKQITELQVAVAAEREKL 581          
BLAST of mRNA_Ecto-sp8_S_contig9476.31021.1 vs. uniprot
Match: A0A024TMT8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TMT8_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.690e-13
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    7 DAAHETAVGEVRSELRLKSFELSQLGVAHAEKCSSLRQAGLEVDMLKEQVAVHRAEFAELEASTTRKTSELQLLLVGERDKV 252
            DA   T +  VR++L++K FEL+QLG    EK   L QA LE DMLK++V VH+A FA+LEA+T ++ +ELQ+ +  ER+K+
Sbjct:  500 DAKATTELAAVRNDLKIKHFELAQLGRQFDEKSQQLHQAHLENDMLKQKVDVHKAGFAKLEATTGKQITELQVAVAAEREKL 581          
BLAST of mRNA_Ecto-sp8_S_contig9476.31021.1 vs. uniprot
Match: A0A067CKB7_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CKB7_SAPPC)

HSP 1 Score: 72.8 bits (177), Expect = 5.860e-13
Identity = 39/82 (47.56%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    7 DAAHETAVGEVRSELRLKSFELSQLGVAHAEKCSSLRQAGLEVDMLKEQVAVHRAEFAELEASTTRKTSELQLLLVGERDKV 252
            DA   T+V EVR+EL++K FEL+QL   + EK   L+ A LEVDMLK++V VH+AEF +LE  + ++ ++L+L +   RDK+
Sbjct:  470 DAQFTTSVAEVRNELKIKHFELAQLSRNYEEKSQHLQLAHLEVDMLKQKVDVHKAEFQKLEMQSAKEMAQLRLDVASYRDKL 551          
BLAST of mRNA_Ecto-sp8_S_contig9476.31021.1 vs. uniprot
Match: A0A7S2SFM4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFM4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.480e-12
Identity = 34/72 (47.22%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 QSDAAHETAVGEVRSELRLKSFELSQLGVAHAEKCSSLRQAGLEVDMLKEQVAVHRAEFAELEASTTRKTSE 216
            +++A HETA  E+R+EL++K+FEL+QLGV H  +   LR+A L+V +L++QVA+H  EF  LEA+   +  E
Sbjct:  362 KAEATHETAAAELRTELKMKTFELTQLGVTHEARMEELREARLQVGVLEKQVAIHEGEFRRLEATALTQKRE 433          
BLAST of mRNA_Ecto-sp8_S_contig9476.31021.1 vs. uniprot
Match: T0S1F6_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S1F6_SAPDV)

HSP 1 Score: 70.9 bits (172), Expect = 2.790e-12
Identity = 37/82 (45.12%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    7 DAAHETAVGEVRSELRLKSFELSQLGVAHAEKCSSLRQAGLEVDMLKEQVAVHRAEFAELEASTTRKTSELQLLLVGERDKV 252
            DA   T+V +VR+EL++K FEL+QL   + EK   L+ A LE+DMLK++V VH+AEF +LE  +  + ++L+L +   RDK+
Sbjct:  486 DAQFTTSVAQVRNELKIKHFELTQLSRNYEEKSQHLQLAHLEIDMLKQKVDVHKAEFQKLETQSANELAQLRLDVASYRDKL 567          
BLAST of mRNA_Ecto-sp8_S_contig9476.31021.1 vs. uniprot
Match: W4GA44_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GA44_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.210e-12
Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    1 QSDAAHETAVGEVRSELRLKSFELSQLGVAHAEKCSSLRQAGLEVDMLKEQVAVHRAEFAELEASTTRKTSELQLLLVGERDKV 252
            ++DA   T V  +R++L++K FEL+QLG    +    L Q+ LE DM K++V  H+AEFA+LEAST ++ ++LQL +  ER+K+
Sbjct:  501 RADAKWTTDVAALRNDLKMKHFELAQLGRQFDDTSRQLHQSHLENDMYKQKVDAHKAEFAKLEASTGKQIAQLQLAVAAEREKL 584          
BLAST of mRNA_Ecto-sp8_S_contig9476.31021.1 vs. uniprot
Match: A0A6G0WMT4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WMT4_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.340e-11
Identity = 35/82 (42.68%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    7 DAAHETAVGEVRSELRLKSFELSQLGVAHAEKCSSLRQAGLEVDMLKEQVAVHRAEFAELEASTTRKTSELQLLLVGERDKV 252
            DA   T   +VR++L +K FEL+QL   + +K + L QA LE +ML+++V VH+ EFA+LEA++++  + L+L L  ER+K+
Sbjct:  362 DAKWTTDCAQVRNDLNMKHFELTQLSQKYDDKVNQLHQAHLENEMLRQKVEVHKNEFAKLEATSSKSIAHLELALKSEREKL 443          
BLAST of mRNA_Ecto-sp8_S_contig9476.31021.1 vs. uniprot
Match: A0A2D4CFB1_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFB1_PYTIN)

HSP 1 Score: 62.0 bits (149), Expect = 3.580e-9
Identity = 31/80 (38.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   13 AHETAVGEVRSELRLKSFELSQLGVAHAEKCSSLRQAGLEVDMLKEQVAVHRAEFAELEASTTRKTSELQLLLVGERDKV 252
            AH T V  +R++L++K FELSQLG +  E+ + L  A  ++++L+++V V + EFA LE ++T + ++L+  L  ER+K+
Sbjct:  431 AHTTTVATLRNDLKMKHFELSQLGASLDERMTELHSAKRQIELLEQKVRVLQEEFARLETTSTTRIAQLEAXLDXERNKL 510          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9476.31021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FV48_ECTSI5.520e-4298.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A485LEL3_9STRA2.160e-1550.00Aste57867_20200 protein n=1 Tax=Aphanomyces stella... [more]
A0A024TME5_9STRA1.670e-1348.78Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024TMT8_9STRA1.690e-1348.78Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A067CKB7_SAPPC5.860e-1347.56Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A7S2SFM4_9STRA1.480e-1247.22Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
T0S1F6_SAPDV2.790e-1245.12Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
W4GA44_9STRA5.210e-1244.05Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0WMT4_9STRA3.340e-1142.68Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A2D4CFB1_PYTIN3.580e-938.75Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9476contigEcto-sp8_S_contig9476:595..1548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score157.9
Seed ortholog evalue2.3e-36
Seed eggNOG ortholog2880.D7FV48
Preferred namePIBF1
Model size279
KEGG koko:K16538
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000226,GO:0000278,GO:0000280,GO:0000819,GO:0001817,GO:0001818,GO:0001819,GO:0001932,GO:0001933,GO:0001934,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0003674,GO:0005102,GO:0005126,GO:0005136,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007080,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010562,GO:0010563,GO:0010565,GO:0010604,GO:0010605,GO:0010646,GO:0010647,GO:0010648,GO:0015630,GO:0016043,GO:0016310,GO:0018108,GO:0018193,GO:0018212,GO:0019216,GO:0019217,GO:0019220,GO:0019222,GO:0019538,GO:0022402,GO:0022607,GO:0023051,GO:0023056,GO:0023057,GO:0030030,GO:0030031,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031392,GO:0031393,GO:0031399,GO:0031400,GO:0031401,GO:0032147,GO:0032268,GO:0032269,GO:0032270,GO:0032653,GO:0032655,GO:0032695,GO:0032733,GO:0032814,GO:0032815,GO:0033036,GO:0033365,GO:0033674,GO:0034451,GO:0034613,GO:0036211,GO:0042304,GO:0042325,GO:0042326,GO:0042327,GO:0042509,GO:0042531,GO:0042532,GO:0042976,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043549,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044380,GO:0044421,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044782,GO:0045717,GO:0045833,GO:0045859,GO:0045860,GO:0045922,GO:0045936,GO:0045937,GO:0046425,GO:0046426,GO:0046427,GO:0046890,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050000,GO:0050730,GO:0050731,GO:0050732,GO:0050789,GO:0050790,GO:0050794,GO:0050865,GO:0050866,GO:0051055,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051225,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051249,GO:0051250,GO:0051276,GO:0051303,GO:0051310,GO:0051338,GO:0051347,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060271,GO:0062012,GO:0062014,GO:0065007,GO:0065009,GO:0070727,GO:0070851,GO:0070925,GO:0071539,GO:0071704,GO:0071840,GO:0072698,GO:0080090,GO:0090307,GO:0098813,GO:0120031,GO:0120036,GO:0140014,GO:1901564,GO:1902531,GO:1902532,GO:1902533,GO:1902850,GO:1903047,GO:1904892,GO:1904893,GO:1904894,GO:1905508,GO:1905515,GO:2001279
Exons2
EggNOG OGs28J7Y@1,2QRKC@2759
Cds size279
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145305.7648726-CDS-Ecto-sp8_S_contig9476:594..7531681145305.7648726-CDS-Ecto-sp8_S_contig9476:594..753Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9476 595..753 -
1681145305.78052-CDS-Ecto-sp8_S_contig9476:1428..15481681145305.78052-CDS-Ecto-sp8_S_contig9476:1428..1548Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9476 1429..1548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9476.31021.1prot_Ecto-sp8_S_contig9476.31021.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9476 595..1548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9476.31021.1

>prot_Ecto-sp8_S_contig9476.31021.1 ID=prot_Ecto-sp8_S_contig9476.31021.1|Name=mRNA_Ecto-sp8_S_contig9476.31021.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=93bp
QSDAAHETAVGEVRSELRLKSFELSQLGVAHAEKCSSLRQAGLEVDMLKE
QVAVHRAEFAELEASTTRKTSELQLLLVGERDKVCGHCFGVC*
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mRNA from alignment at Ecto-sp8_S_contig9476:595..1548-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9476.31021.1 ID=mRNA_Ecto-sp8_S_contig9476.31021.1|Name=mRNA_Ecto-sp8_S_contig9476.31021.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=954bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9476:595..1548- (Ectocarpus species8 EcLAC_412)
CAGTCCGACGCGGCACACGAGACGGCCGTGGGCGAGGTGCGGAGCGAGCT TCGGCTCAAGAGCTTCGAGCTCAGCCAGCTTGGGGTGGCGCACGCGGAGA AGTGCTCGTCCTTGCGACAGGTGTGTAGGCGTCTGTCTCCATGTGTGTGT GTGTGTGTGTGTTTGTTTGTTTGTTTGCCAATGAAAAGGGGATATGGGTG CGTTTCTATAATATGTGTGGTGTTGCTTGCCGTAGATCGTACGAACGACA CGGCAACGTACGATTTTTCTCTCCGCCGCAGAAGAAGCTCCTTCGCCGCC ACGCTGCATGCACTTCTTTCGGCCGCCCGTGCAACCACGATAGATACCGA ATCGTACTTTCGCCACAGCAGACATTGATCGGTGCAAATCACAAGCGTCG CTCGTAGGGTTAGGTGTGCCATCGAACGCGACGAAGCCCCGCAACACCTC AGCACCAAGAGGCACTAACACTGCAGTGAAATATCTCCAGTGCAGTATAC GGAAGGCGTCCGTCCGCGTCAGTTGGACCAGTACGGACATTAGGAGGTAC AGAGGGGAGACCCAGCGATGACAGCCAGTGGTGTCAGAAATATTCTGGGC CACTACTGTCTGAGGTGCTGTGTAGCTGACGTCTGCGCTCGGGAGAGCAA GTTAATTTTCCGAGATTTTATGCCGGAACGGTTTTCAATGTGAAGACCAC AACAGCAGCAACAGCAACAACAACAACAACAACAACAACAACAACAAGCA ATACTGTATTGCCACACAAACCACACGGCACAACAACGAACGCAGGCGGG GCTAGAGGTGGACATGCTGAAGGAGCAGGTGGCGGTGCACCGCGCGGAGT TCGCCGAGCTGGAGGCGTCAACCACAAGAAAGACGTCCGAGCTGCAGCTC CTTCTCGTCGGCGAACGAGACAAGGTGTGCGGCCATTGTTTTGGTGTTTG TTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9476:595..1548-

>mRNA_Ecto-sp8_S_contig9476.31021.1 ID=mRNA_Ecto-sp8_S_contig9476.31021.1|Name=mRNA_Ecto-sp8_S_contig9476.31021.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9476:595..1548- (Ectocarpus species8 EcLAC_412)
CAGTCCGACGCGGCACACGAGACGGCCGTGGGCGAGGTGCGGAGCGAGCT
TCGGCTCAAGAGCTTCGAGCTCAGCCAGCTTGGGGTGGCGCACGCGGAGA
AGTGCTCGTCCTTGCGACAGGCGGGGCTAGAGGTGGACATGCTGAAGGAG
CAGGTGGCGGTGCACCGCGCGGAGTTCGCCGAGCTGGAGGCGTCAACCAC
AAGAAAGACGTCCGAGCTGCAGCTCCTTCTCGTCGGCGAACGAGACAAGG
TGTGCGGCCATTGTTTTGGTGTTTGTTGA
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