mRNA_Ecto-sp8_S_contig94751.31020.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig94751.31020.1
Unique NamemRNA_Ecto-sp8_S_contig94751.31020.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig94751.31020.1 vs. uniprot
Match: A0A6H5L5K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K2_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 5.500e-42
Identity = 95/120 (79.17%), Postives = 99/120 (82.50%), Query Frame = -1 
Query:  190 CRESFVLGLVREVRAEESVAATAADVRAGSPPEDGALASLDGNEGSLAVEDEDAAAXXXXXXXXXXXXXKEKE-GSRGKEGVVGTTLPAKKTGGPAGDALVAAAGAXXVPATPVTPDGCL 546
            CRESFVLGLVREVRAEES AATAADVRAGSPPEDGALASLDGNEGSLAV+DE+A A             KEKE G+RGKEGVV TTLPAKKTGGPAGDALVA  GA  VPATP+TPDGCL
Sbjct:  675 CRESFVLGLVREVRAEESAAATAADVRAGSPPEDGALASLDGNEGSLAVKDEEATAAAATAAG------KEKEEGNRGKEGVVRTTLPAKKTGGPAGDALVAT-GAAAVPATPITPDGCL 787
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BLAST of mRNA_Ecto-sp8_S_contig94751.31020.1 vs. uniprot
Match: D7G202_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G202_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 8.110e-20
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = -1 
Query:  388 CRESFVLGLVREVRAEESVAATAADVRAGSPPEDGALASLDGNEGSLAVEDED 546
            CRESFVLGLVREVRAEES AA+AADVRAGSPPEDGALASLDGNEGSLAVEDED
Sbjct:  898 CRESFVLGLVREVRAEESAAASAADVRAGSPPEDGALASLDGNEGSLAVEDED 950
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94751.31020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5K2_9PHAE5.500e-4279.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G202_ECTSI8.110e-2096.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94751contigEcto-sp8_S_contig94751:46..593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size549
Hectar predicted targeting categoryother localisation
Exons1
Cds size546
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145305.7229512-CDS-Ecto-sp8_S_contig94751:45..5911681145305.7229512-CDS-Ecto-sp8_S_contig94751:45..591Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94751 46..591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94751.31020.1prot_Ecto-sp8_S_contig94751.31020.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig94751 46..591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig94751.31020.1

>prot_Ecto-sp8_S_contig94751.31020.1 ID=prot_Ecto-sp8_S_contig94751.31020.1|Name=mRNA_Ecto-sp8_S_contig94751.31020.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=182bp
ASLWPTHSTASSCSKSGVADVISRPDIYLTYPLFSWTACFVNSTKIRPRP
ANKNRSPVPPARLQAAIRSNRGCRYRSSASSSDQRVPGGTPRLLRGEGRP
DDAFLSAAPLLLLAGGGGGGGGGGGGGGGVLVLYRQGALVAVQRGQGPVF
RRGSGADVSGSSGNALLRPYLPHQSENEALSA
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mRNA from alignment at Ecto-sp8_S_contig94751:46..593+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig94751.31020.1 ID=mRNA_Ecto-sp8_S_contig94751.31020.1|Name=mRNA_Ecto-sp8_S_contig94751.31020.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=548bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94751:46..593+ (Ectocarpus species8 EcLAC_412)
GCAAGTTTGTGGCCAACACACTCTACTGCCTCCTCCTGTAGTAAAAGCGG
CGTCGCGGATGTCATATCGCGGCCAGATATCTATCTCACTTATCCGTTGT
TCTCGTGGACTGCTTGCTTTGTCAACTCTACAAAAATCCGACCAAGACCG
GCCAACAAAAACCGGTCGCCGGTACCGCCGGCCCGCTTACAAGCAGCCAT
CCGGAGTAACCGGGGTTGCAGGTACCGCAGCAGCGCCAGCAGCAGCGACC
AACGCGTCCCCGGCGGGACCCCCCGTCTTCTTCGCGGGGAGGGTCGTCCC
GACGACGCCTTCCTTTCCGCGGCTCCCCTCCTTCTCCTTGCCGGCGGCGG
CGGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGTCCTCGTCCTCT
ACCGCCAGGGAGCCCTCGTTGCCGTCCAACGAGGCCAGGGCCCCGTCTTC
CGGCGGGGATCCGGCGCGGACGTCAGCGGCAGTAGCGGCAACGCTCTCCT
CCGCCCTTACCTCCCTCACCAGTCCGAGAACGAAGCTCTCTCTGCACG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig94751:46..593+

>mRNA_Ecto-sp8_S_contig94751.31020.1 ID=mRNA_Ecto-sp8_S_contig94751.31020.1|Name=mRNA_Ecto-sp8_S_contig94751.31020.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94751:46..593+ (Ectocarpus species8 EcLAC_412)
GCAAGTTTGTGGCCAACACACTCTACTGCCTCCTCCTGTAGTAAAAGCGG
CGTCGCGGATGTCATATCGCGGCCAGATATCTATCTCACTTATCCGTTGT
TCTCGTGGACTGCTTGCTTTGTCAACTCTACAAAAATCCGACCAAGACCG
GCCAACAAAAACCGGTCGCCGGTACCGCCGGCCCGCTTACAAGCAGCCAT
CCGGAGTAACCGGGGTTGCAGGTACCGCAGCAGCGCCAGCAGCAGCGACC
AACGCGTCCCCGGCGGGACCCCCCGTCTTCTTCGCGGGGAGGGTCGTCCC
GACGACGCCTTCCTTTCCGCGGCTCCCCTCCTTCTCCTTGCCGGCGGCGG
CGGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGTCCTCGTCCTCT
ACCGCCAGGGAGCCCTCGTTGCCGTCCAACGAGGCCAGGGCCCCGTCTTC
CGGCGGGGATCCGGCGCGGACGTCAGCGGCAGTAGCGGCAACGCTCTCCT
CCGCCCTTACCTCCCTCACCAGTCCGAGAACGAAGCTCTCTCTGCA
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