mRNA_Ecto-sp8_S_contig94737.31018.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig94737.31018.1
Unique NamemRNA_Ecto-sp8_S_contig94737.31018.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig94737.31018.1 vs. uniprot
Match: D8LHW7_ECTSI (FYVE zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHW7_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.740e-30
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 INRLGPMLTVEEAADWVSHAVQLPREVAEAFRSNSISAYDFPELVEDNGAGLYDLGIK 174
            INRLGPMLTVEEAADWVSHAVQLPREVAEAFRSNSISAYDFPELVEDNGAGLYDLGIK
Sbjct:  207 INRLGPMLTVEEAADWVSHAVQLPREVAEAFRSNSISAYDFPELVEDNGAGLYDLGIK 264
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BLAST of mRNA_Ecto-sp8_S_contig94737.31018.1 vs. uniprot
Match: A0A6H5L898_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L898_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.750e-30
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 INRLGPMLTVEEAADWVSHAVQLPREVAEAFRSNSISAYDFPELVEDNGAGLYDLGIK 174
            INRLGPMLTVEEAADWVSHAVQLPREVAEAFRSNSISAYDFPELVEDNGAGLYDLGIK
Sbjct:  227 INRLGPMLTVEEAADWVSHAVQLPREVAEAFRSNSISAYDFPELVEDNGAGLYDLGIK 284
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BLAST of mRNA_Ecto-sp8_S_contig94737.31018.1 vs. uniprot
Match: A0A7S2CAD4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CAD4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.210e-14
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    7 RLGPMLTVEEAADWVSHAVQLPREVAEAFRSNSISAYDFPELVEDNGAGL-YDLGI 171
            R+G +LTV   A+WV H +QLP EV E FRSNS++ YDF ELVED+GA L +D+GI
Sbjct:  103 RIGAVLTVSAVAEWVIHGLQLPEEVGELFRSNSVTGYDFAELVEDDGAALGHDIGI 158
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BLAST of mRNA_Ecto-sp8_S_contig94737.31018.1 vs. uniprot
Match: A0A6H5KPI6_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPI6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 6.690e-13
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 NRLGPMLTVEEAADWVSHAVQLPREVAEAFRSNSISAYDFPELVEDNGAGL-YDLGI 171
            +RLG +LTV+EAA WV HA QLP+EVA+AF +N ++ YDFPEL    GA L  DLGI
Sbjct:  153 DRLGTLLTVDEAAQWVLHAAQLPQEVADAFVNNMVTGYDFPELAARQGALLEQDLGI 209
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BLAST of mRNA_Ecto-sp8_S_contig94737.31018.1 vs. uniprot
Match: A0A7S2CA40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CA40_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.640e-12
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   40 ADWVSHAVQLPREVAEAFRSNSISAYDFPELVEDNGAGL-YDLGI 171
            ADWV H +QLP EV E FRSNS++ YDF ELVED+GA L +D+GI
Sbjct:    3 ADWVIHGLQLPEEVGELFRSNSVTGYDFAELVEDDGAALGHDIGI 47
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BLAST of mRNA_Ecto-sp8_S_contig94737.31018.1 vs. uniprot
Match: A0A7S3V9U2_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V9U2_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.090e-11
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    7 RLGPMLTVEEAADWVSHAVQLPREVAEAFRSNSISAYDFPELVEDNGAGLYD 162
            +L  +LTV+E ADWV HAVQLP  + +  R   ++ YDFPELVEDNG  L D
Sbjct:  287 KLESLLTVDEVADWVVHAVQLPSYIGDIVRDKHVTGYDFPELVEDNGKALVD 338
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BLAST of mRNA_Ecto-sp8_S_contig94737.31018.1 vs. uniprot
Match: A0A2P4WYB1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WYB1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 8.640e-10
Identity = 27/55 (49.09%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   10 LGPMLTVEEAADWVSHAVQLPREVAEAFRSNSISAYDFPELVEDNGAGLYDLGIK 174
            +G  +TV+E ADW+++AVQLP + +E FR+NSIS Y FP L+ ++GA L ++G+ 
Sbjct:  174 VGSEMTVDEVADWIAYAVQLP-QYSEVFRANSISGYTFPLLMANDGARLQEIGVN 227
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BLAST of mRNA_Ecto-sp8_S_contig94737.31018.1 vs. uniprot
Match: A0A7S2KT34_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KT34_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.210e-9
Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    7 RLGPMLTVEEAADWVSHAVQLPREVAEAFRSNSISAYDFPELVEDNGAGL-YDLGIK 174
            +L  +LTV+E  DWV +AVQLP +VA  F  +S++ YDFPEL+E++G  +  +LGI+
Sbjct:  188 QLESVLTVDEVKDWVLYAVQLPEKVANTFVEHSVTGYDFPELIENDGDAMRVELGIE 244
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BLAST of mRNA_Ecto-sp8_S_contig94737.31018.1 vs. uniprot
Match: A0A7S1B4T7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B4T7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.650e-9
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    4 NRLGPMLTVEEAADWVSHAVQLPREVAEAFRSNSISAYDFPELVEDNGAGLYD-LGIK 174
            N+L  +LT +E A+WV +AVQLP  VA  FR N+++ +DF ELV +NG  L   LGI+
Sbjct:  121 NKLECLLTADEVAEWVKYAVQLPENVANTFRDNAVTGFDFSELVVNNGEALERYLGIE 178
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BLAST of mRNA_Ecto-sp8_S_contig94737.31018.1 vs. uniprot
Match: M4B6E3_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6E3_HYAAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.070e-8
Identity = 26/50 (52.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:   22 LTVEEAADWVSHAVQLPREVAEAFRSNSISAYDFPELVEDNGAGLYDLGI 171
            +TV+E ADWV++AVQLP + +E FR+NSIS Y FP L+ ++GA + ++G+
Sbjct:    1 MTVDEVADWVAYAVQLP-QYSEIFRANSISGYTFPLLMANDGARMQEIGV 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94737.31018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LHW7_ECTSI1.740e-30100.00FYVE zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L898_9PHAE1.750e-30100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2CAD4_9STRA1.210e-1460.71Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A6H5KPI6_9PHAE6.690e-1361.40EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S2CA40_9STRA2.640e-1266.67Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3V9U2_9STRA2.090e-1155.77Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A2P4WYB1_9STRA8.640e-1049.09Uncharacterized protein n=2 Tax=Phytophthora palmi... [more]
A0A7S2KT34_9STRA1.210e-949.12Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1B4T7_9STRA1.650e-950.00Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
M4B6E3_HYAAE1.070e-852.00Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94737contigEcto-sp8_S_contig94737:254..427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score107.1
Seed ortholog evalue2.6e-21
Seed eggNOG ortholog2880.D8LHW7
Preferred nameSTIM2
Model size174
KEGG koko:K16059,ko:K18196
KEGG TC1.A.52.1.1
KEGG Pathwayko04020,ko04611,map04020,map04611
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0002009,GO:0002020,GO:0002115,GO:0002165,GO:0003674,GO:0005215,GO:0005216,GO:0005217,GO:0005246,GO:0005261,GO:0005262,GO:0005488,GO:0005509,GO:0005513,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0005887,GO:0005938,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006937,GO:0006940,GO:0007154,GO:0007165,GO:0007204,GO:0007275,GO:0007276,GO:0007292,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008016,GO:0008017,GO:0008092,GO:0008150,GO:0008324,GO:0009593,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009987,GO:0010035,GO:0010038,GO:0010959,GO:0012505,GO:0014902,GO:0015075,GO:0015085,GO:0015267,GO:0015276,GO:0015278,GO:0015279,GO:0015318,GO:0015631,GO:0016020,GO:0016021,GO:0016247,GO:0016528,GO:0016529,GO:0019722,GO:0019725,GO:0019899,GO:0019932,GO:0019953,GO:0022414,GO:0022416,GO:0022603,GO:0022803,GO:0022834,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030100,GO:0030154,GO:0030176,GO:0030424,GO:0030425,GO:0030426,GO:0030427,GO:0030728,GO:0031090,GO:0031214,GO:0031224,GO:0031226,GO:0031227,GO:0031984,GO:0032237,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032504,GO:0032541,GO:0032879,GO:0032991,GO:0033017,GO:0033267,GO:0034220,GO:0034505,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035556,GO:0036477,GO:0042175,GO:0042221,GO:0042475,GO:0042476,GO:0042592,GO:0042692,GO:0042802,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043270,GO:0044057,GO:0044093,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0045765,GO:0045766,GO:0045807,GO:0045933,GO:0045987,GO:0046872,GO:0046873,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048609,GO:0048646,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048763,GO:0048856,GO:0048869,GO:0048878,GO:0050764,GO:0050766,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051010,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051146,GO:0051179,GO:0051209,GO:0051234,GO:0051239,GO:0051240,GO:0051282,GO:0051283,GO:0051480,GO:0051592,GO:0051606,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051924,GO:0051928,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060099,GO:0060100,GO:0060401,GO:0060402,GO:0060429,GO:0060562,GO:0060627,GO:0061061,GO:0065007,GO:0065008,GO:0065009,GO:0070166,GO:0070588,GO:0070838,GO:0071782,GO:0071944,GO:0072503,GO:0072507,GO:0072511,GO:0090257,GO:0097186,GO:0097447,GO:0097458,GO:0097553,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098772,GO:0098827,GO:0099094,GO:0099106,GO:0099568,GO:0099604,GO:0120025,GO:0120038,GO:0150034,GO:1901019,GO:1901021,GO:1901074,GO:1901076,GO:1901339,GO:1901341,GO:1901342,GO:1903169,GO:1903522,GO:1903779,GO:1904018,GO:1904062,GO:1904064,GO:1904427,GO:1905153,GO:1905155,GO:2000026,GO:2000425,GO:2000427,GO:2001256,GO:2001257,GO:2001259
Exons1
EggNOG free text desc.positive regulation of store-operated calcium channel activity
EggNOG OGsKOG4403@1,KOG4403@2759
Cds size156
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145305.6367445-UTR-Ecto-sp8_S_contig94737:253..2711681145305.6367445-UTR-Ecto-sp8_S_contig94737:253..271Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig94737 254..271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145305.6534095-CDS-Ecto-sp8_S_contig94737:271..4271681145305.6534095-CDS-Ecto-sp8_S_contig94737:271..427Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94737 272..427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94737.31018.1prot_Ecto-sp8_S_contig94737.31018.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig94737 272..427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig94737.31018.1

>prot_Ecto-sp8_S_contig94737.31018.1 ID=prot_Ecto-sp8_S_contig94737.31018.1|Name=mRNA_Ecto-sp8_S_contig94737.31018.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=52bp
MLTVEEAADWVSHAVQLPREVAEAFRSNSISAYDFPELVEDNGAGLYDLG
IK
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mRNA from alignment at Ecto-sp8_S_contig94737:254..427+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig94737.31018.1 ID=mRNA_Ecto-sp8_S_contig94737.31018.1|Name=mRNA_Ecto-sp8_S_contig94737.31018.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94737:254..427+ (Ectocarpus species8 EcLAC_412)
ATTAATCGCCTGGGACCGATGCTGACCGTCGAGGAGGCGGCGGACTGGGT
GTCTCACGCTGTCCAGCTCCCCCGAGAAGTCGCCGAAGCCTTCCGGAGCA
ACTCCATCTCCGCCTACGACTTCCCCGAGCTCGTCGAGGACAACGGTGCC
GGCCTGTACGACCTTGGCATCAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig94737:254..427+

>mRNA_Ecto-sp8_S_contig94737.31018.1 ID=mRNA_Ecto-sp8_S_contig94737.31018.1|Name=mRNA_Ecto-sp8_S_contig94737.31018.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94737:254..427+ (Ectocarpus species8 EcLAC_412)
ATGCTGACCGTCGAGGAGGCGGCGGACTGGGTGTCTCACGCTGTCCAGCT
CCCCCGAGAAGTCGCCGAAGCCTTCCGGAGCAACTCCATCTCCGCCTACG
ACTTCCCCGAGCTCGTCGAGGACAACGGTGCCGGCCTGTACGACCTTGGC
ATCAAG
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