mRNA_Ecto-sp8_S_contig9473.31017.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9473.31017.1
Unique NamemRNA_Ecto-sp8_S_contig9473.31017.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9473.31017.1 vs. uniprot
Match: A0A6H5KZD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZD1_9PHAE)

HSP 1 Score: 423 bits (1087), Expect = 1.370e-136
Identity = 267/392 (68.11%), Postives = 282/392 (71.94%), Query Frame = 1 
Query:  433 TSKPKECIDNTRRDGRVHRSGDGGGSSVDTHGYHVKSSSRHDTAPKVLLARETEASLRREQRVAAAKHKEEKELRLSSSFRAKELHATNGPDWATIKAHQDLVRKQRTRDRAAFLAATSSLPARMARHAVMQAVAEDRASANVRSGAGDKSGEDGGRGSMGGGTGTMDPGDIGRVMQRRQERRVFEN--------------------------------PSLAAAKASSRVAVTRPLTPPMERRRLAQEAKRRAKENADQSAREAAANQRVQDERRQFQQLVEMHRATGSTFRETKASVRKAQEARQKIVEDLEQEERERAVVLAEEARRREVSRAVREYVXXXXXXXXEDHGAGPPLKELVQRKKEEKQAEFRERWRLNRSGLRKALRKRP 1512
            TS  +E IDNT R G VH S DGGG S DT GYHV SSSRHDTAPKVLLARETEA+LRREQRVAAAK KEE+ LRLSSSFRAKELHATNGPDWATIKAHQDLVRKQRTRDRAAFLAATSSLPARMA+HA MQAVAEDRASANVRSG  D +G++GGRGS+GGG GT+DPGDIGRVM+RRQERRVFEN                                 SLAAAKA SRVAVTRPLTPPME+RRLAQEAKRR KENADQSAREAAANQRVQDER+ FQQLVEM RATG TFRETKASVRKAQEAR++IV+DLE                                                    EEKQAEFRERWRLNRSGLR ALRKRP
Sbjct:  252 TSPVEERIDNTARGGCVHSSDDGGGCSGDTRGYHVTSSSRHDTAPKVLLARETEAALRREQRVAAAKEKEEEGLRLSSSFRAKELHATNGPDWATIKAHQDLVRKQRTRDRAAFLAATSSLPARMAQHAAMQAVAEDRASANVRSGVRDTNGDNGGRGSVGGGAGTVDPGDIGRVMKRRQERRVFENRGLVAQTAYNLACLPPRRRLLTTTMVGRRKWEASLAAAKACSRVAVTRPLTPPMEKRRLAQEAKRREKENADQSAREAAANQRVQDERQHFQQLVEMLRATGRTFRETKASVRKAQEARKQIVKDLE----------------------------------------------------EEKQAEFRERWRLNRSGLRLALRKRP 591
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BLAST of mRNA_Ecto-sp8_S_contig9473.31017.1 vs. uniprot
Match: D7G410_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G410_ECTSI)

HSP 1 Score: 384 bits (987), Expect = 5.940e-123
Identity = 242/331 (73.11%), Postives = 245/331 (74.02%), Query Frame = 1 
Query:  520 THGYHVKSSSRHDTAPKVLLARETEASLRREQRVAAAKHKEEKELRLSSSFRAKELHATNGPDWATIKAHQDLVRKQRTRDRAAFLAATSSLPARMARHAVMQAVAEDRASANVRSGAGDKSGEDGGRGSMGGGTGTMDPGDIGRVMQRRQERRVFENPSLAAAKASSRVAVTRPLTPPMERRRLAQEAKRRAKENADQSAREAAANQRVQDERRQFQQLVEMHRATGSTFRETKASVRKAQEARQKIVEDLEQEERERAVVLAEEARRREVSRAVREYVXXXXXXXXEDHGAGPPLKELVQRKKEEKQAEFRERWRLNRSGLRKALRKRP 1512
            T GYHVKSSSRHDTAPKVLLA                      ELRLSSSFRAKELHATNGPDWATIKAHQDLVRKQRTRDRAAFLAATSSLPARMARHA MQAVAEDRASANVRSGAGDKSGE G RGSMGGGTGT+DPGDIGRVMQRRQER      SLAAAKASSRVAVTRPLTPPME+RRLAQE KRRAKE ADQSAREAAANQRVQDERRQFQQLVEMHRATGSTFRETKASVRKAQEARQKIVEDLE                                                    EEKQAEFRERWRLNRSGLR+ALRKRP
Sbjct:  237 TRGYHVKSSSRHDTAPKVLLAXXXXXXXXXXXXXXXXXXXXXXELRLSSSFRAKELHATNGPDWATIKAHQDLVRKQRTRDRAAFLAATSSLPARMARHAAMQAVAEDRASANVRSGAGDKSGEHGRRGSMGGGTGTVDPGDIGRVMQRRQER---WEASLAAAKASSRVAVTRPLTPPMEKRRLAQETKRRAKEKADQSAREAAANQRVQDERRQFQQLVEMHRATGSTFRETKASVRKAQEARQKIVEDLE----------------------------------------------------EEKQAEFRERWRLNRSGLRQALRKRP 512
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9473.31017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZD1_9PHAE1.370e-13668.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G410_ECTSI5.940e-12373.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9473contigEcto-sp8_S_contig9473:3444..7220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1512
Hectar predicted targeting categoryother localisation
Exons6
Cds size1512
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9473.31017.1prot_Ecto-sp8_S_contig9473.31017.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9473 3444..7220 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145305.5448139-CDS-Ecto-sp8_S_contig9473:3443..35211681145305.5448139-CDS-Ecto-sp8_S_contig9473:3443..3521Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9473 3444..3521 -
1681145305.5558262-CDS-Ecto-sp8_S_contig9473:3916..40721681145305.5558262-CDS-Ecto-sp8_S_contig9473:3916..4072Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9473 3917..4072 -
1681145305.5676992-CDS-Ecto-sp8_S_contig9473:4520..46821681145305.5676992-CDS-Ecto-sp8_S_contig9473:4520..4682Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9473 4521..4682 -
1681145305.580273-CDS-Ecto-sp8_S_contig9473:5206..53281681145305.580273-CDS-Ecto-sp8_S_contig9473:5206..5328Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9473 5207..5328 -
1681145305.5916111-CDS-Ecto-sp8_S_contig9473:5815..61251681145305.5916111-CDS-Ecto-sp8_S_contig9473:5815..6125Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9473 5816..6125 -
1681145305.6021442-CDS-Ecto-sp8_S_contig9473:6536..72201681145305.6021442-CDS-Ecto-sp8_S_contig9473:6536..7220Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9473 6537..7220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9473.31017.1

>prot_Ecto-sp8_S_contig9473.31017.1 ID=prot_Ecto-sp8_S_contig9473.31017.1|Name=mRNA_Ecto-sp8_S_contig9473.31017.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=504bp
ATIDERPSAQAAGVGGICSTAAGTAPTRGGWVGTARTIASPRETGYHVES
RGNAGAGKEQRFLAVRPKNNARPSCQKDGTTCSRSTISPCATAPEKRRKS
TLGGGDVADRGDADRGDAKLAEAALAGRVGGKEGNVAGIELLEETSKPKE
CIDNTRRDGRVHRSGDGGGSSVDTHGYHVKSSSRHDTAPKVLLARETEAS
LRREQRVAAAKHKEEKELRLSSSFRAKELHATNGPDWATIKAHQDLVRKQ
RTRDRAAFLAATSSLPARMARHAVMQAVAEDRASANVRSGAGDKSGEDGG
RGSMGGGTGTMDPGDIGRVMQRRQERRVFENPSLAAAKASSRVAVTRPLT
PPMERRRLAQEAKRRAKENADQSAREAAANQRVQDERRQFQQLVEMHRAT
GSTFRETKASVRKAQEARQKIVEDLEQEERERAVVLAEEARRREVSRAVR
EYVVASEARRREDHGAGPPLKELVQRKKEEKQAEFRERWRLNRSGLRKAL
RKRP
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mRNA from alignment at Ecto-sp8_S_contig9473:3444..7220-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9473.31017.1 ID=mRNA_Ecto-sp8_S_contig9473.31017.1|Name=mRNA_Ecto-sp8_S_contig9473.31017.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3777bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9473:3444..7220- (Ectocarpus species8 EcLAC_412)
GCCACGATAGACGAGAGGCCTTCTGCGCAAGCCGCCGGCGTTGGAGGTAT
ATGTAGTACAGCAGCTGGCACAGCTCCCACCAGGGGTGGTTGGGTGGGGA
CGGCCAGAACTATAGCCAGTCCCAGGGAAACTGGTTACCACGTGGAAAGT
CGAGGCAACGCTGGTGCCGGGAAGGAGCAACGTTTCCTCGCTGTTCGCCC
TAAAAACAATGCCAGGCCTTCCTGCCAGAAGGATGGCACTACTTGCAGCA
GGAGCACAATTTCCCCGTGCGCAACAGCACCGGAAAAGCGGAGAAAGTCA
ACCCTTGGGGGGGGCGACGTCGCCGATCGGGGTGACGCCGATCGGGGTGA
CGCAAAATTAGCTGAAGCGGCTCTCGCTGGACGAGTTGGCGGAAAAGAGG
GCAACGTCGCAGGTATAGAACTGTTAGAAGAGACTAGTAAACCAAAGGAG
TGCATCGACAATACGCGGCGGGACGGTCGCGTCCACCGCAGCGGCGACGG
CGGCGGCAGCAGCGTGGATACTCACGGTTACCACGTGAAGAGCAGTAGTC
GACACGATACGGCCCCGAAGGTGCTCTTGGCTCGCGAAACGGAAGCTTCG
CTTAGGCGCGAGCAGAGAGTGGCGGCGGCAAAGCACAAGGAAGAGAAAGA
GCTGCGCCTGTCATCCTCGTTCCGCGCCAAGGAGGTGAAGCAAGGTCTCG
ACTCTCTAAATCGAGATCTTGAGACAATCAAACTGAGCAGTTCAAGGTCT
GCAACTTTTGGCAGCTACTGACCTGTCTTCAACAAAGTTTTGTCGGCTAG
ATTGAAACTTTTTCGCGTGACCAACACCTCTGTAGCCAGAGGCTCCCGAG
GAATCATCATCCTACACTATCATTCCCGTTGAGCACGACCGATCACCGCA
CCATTGTAGCGCTGATCATCACACCGATCCAGGAAAGAAGATTCCACAAG
CGGTACTTGGGGAATACTATCATTGTAAAGATTGGTTGAAAAATTGCGGA
GCCAGGCTTTCGCTTCCCTCCCCAACACCACCTGCCACCATGCCTCACGG
TGTTCCTCTGACGCTCCGTTATCATTATCGTCCGCGTTTTCTCAGCTGCA
TGCCACAAACGGCCCCGATTGGGCGACTATCAAGGCGCACCAAGACCTTG
TCCGGAAGCAGAGAACCAGAGATCGCGCCGCGTTTCTAGCCGCGACGTCT
TCCCTTCCCGCGCGCATGGCGCGACACGCTGTCATGCAGGCCGTTGCTGA
AGATCGGGCCAGTGCTAACGTGCGCAGCGGAGCTGGGGATAAGAGTGGTG
AAGATGGTGGGAGAGGGTCGATGGGCGGAGGGACGGGAACGATGGATCCG
GGGGACATCGGGCGGGTGATGCAGAGACGGCAAGAGAGGCGAGTCTTCGA
GAACCGTGGGCTTGTCGTCCAAACAGCATATAAGCTAGTATGTTTACCAC
CTCGAAGGAGACTGTTGACTGTGACGATGGTGGGCAGATGGAAGTGCATT
TCCTATGTATTAATACCCATACGCATACACGCTCATCGCGAATTCGAGTC
TAGTACTATAGACAATAACTTCGGGAAGCCCTTGTCACCTGCATGAGAAT
GCACGATAATACTCAGTCGAAACCCCATCACAACCGCTACGACGAAAAGG
TTCGCTGAGAGATACGCTGTTGCTCCGTGCTGCTGAAGCTCGACCGTCTC
AACTCACGTGCCTTTTTTGCAGGTACATATGTCGGAGATTTCTCGCGTGT
GTCAAGAGATGCACCTATTGGCAAAGAACTGGTGTTGTGCTTGGGCATCA
ACAAATCTCATATCCGATCGTGATTCAACTCGGTGATTCCATGTTTACAC
CGATACTGTGATGATGATGTCCTTCCTGCAAAAGGTGGGAAGCGTCGCTC
GCCGCCGCGAAGGCTTCCTCTCGAGTCGCCGTAACCCGGCCCCTCACCCC
GCCGATGGAAAGACGCCGCCTGGCTCAAGAGGCCAAGCGACGAGCGAAGG
AAAACGCCGATCAGGTGAGCGACAAAGGTGGTGGCATCGTGGCATCGCAA
CAGAAAGGTTCATGTGGTTCACCATGAACAGTTCGCGAGAACGGGGATAC
CCTCCGTTTCTGGTGGAACTTCGGCTCGGCGGGGCGGGTCCGCTGTCGAT
GGGGTGGGAAAGAGCAGCCCTTGGTTCCGAGCTGTGCGAAGAAGTACGGT
GCATCTGTAGGTTTCTGACTGCCGGGGTTGCGGTCGTCATCGCTTGGTTG
CCAGGACGTCCGAAGTCTGGTCACCTTTGGTACTTGCTAAGGAAGGCTCG
CACCCTCGATACGACAGCAGTTCTATATATTAAGGTCACCCATCCTTGCA
TAAAGCAGTAGCTGAGTCATCCTGGTTTCACGTAGAAGCGACTGCCGTTG
GAACTGCGAGCTCGAATCTCAGCTCATTTGTTCCAAGCGTTCCTCGGCGA
TCTACTCTAGGACGACAGCTGATAGAAAACGGTTCGCCTCCCTATACACT
CCTGCCAAATCTTTGTCTCGTGGATATCACGTGCACAGAGCGCAAGAGAG
GCGGCGGCGAATCAGCGGGTACAGGACGAAAGACGGCAGTTTCAACAGCT
CGTCGAGATGCACCGGGCCACCGGAAGCACCTTCAGAGAGACGAAAGCGT
CCGTGAGGAAGGCCCAGGAGGCACGACAAAAGATTGTTGAGGACCTAGAG
GTAACGCTCGTTCAACACCGAAGTGCCATCCACAAAGCCCCTACTCCATT
GATCGATCGATATTGTCGCAGTCTTGCCAATATATATGCTGCAGTGAGCC
ATGCTTCAGGAAACAGAATTTCGTACTGGTCCGACCTTCTTGACGGTACC
TTCGAGCGTTAGTGGATACATCACCCTGAAGTTCTCCAACTTCTCGGAGG
TATTCCTCGATGTTCCGACGAGGAATGCCTGATACATTCCAACAGCTTTT
TTGTCGATATATCGCGGAAAACCTAGTTTGCGTGGTCTCGGATCGGAGTT
CTTCGACTACCGAATGACGAGACGTAGGAAGACAGAAACTGCGAGGGATG
TGTTGAAAACGGGACGACCTGAACAAAACAACGCTGAATGGTACTGACCT
CTAGGACTCCCCCGCCCCTGACCCTTTCCCGAATGCTATGACAATCAGCA
AGAGGAGCGAGAGCGAGCGGTCGTGTTGGCGGAAGAGGCGCGTCGAAGAG
AAGTCTCCCGCGCCGTCCGCGAGTACGTGGTAGCATCGGAGGCTAGGAGG
CGGGAGGATCACGGGGCTGGGCCTCCCCTTAAAGAGCTCGTCCAACGAAA
AAAGGCACGAAACGCATCTACCAGTGCTGAAAATGCACGGTGCTTGACAG
ATGGAGCTACAGACCGCCGTCACAAAGAAGCAACTTCTTGTGCTTGTAGC
TCGTTTTTGGGTCATGGCATCATTACGCTCAGCCCGTTTCTTCCCCCCCC
GCCGGGGTCACCCAACCCGGAAAAGGGGGGCGAGGTGTTTGTTTTCTTTG
TTGAAACTGGGGTCTCCTAGGGCAAGTGAATAAAGATGTTGTAGGAGACA
ACGGTGGTTGGAATCGTGGTTGAGATGATGATATCAATGGCACGATAACA
AAAAGCGTCCATTGTTGGGAAAAGTCCAATAATCGTCTTCATAGCAGTGA
CGTTGTTGTTGCCGTCGGCGTCTGGAACCACAATCAACCCCTTTTACAGG
AAGAGAAGCAGGCGGAGTTCCGAGAGAGATGGAGGCTGAACCGATCGGGA
CTTCGCAAAGCTCTCCGCAAGCGGCCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9473:3444..7220-

>mRNA_Ecto-sp8_S_contig9473.31017.1 ID=mRNA_Ecto-sp8_S_contig9473.31017.1|Name=mRNA_Ecto-sp8_S_contig9473.31017.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1512bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9473:3444..7220- (Ectocarpus species8 EcLAC_412)
GCCACGATAGACGAGAGGCCTTCTGCGCAAGCCGCCGGCGTTGGAGGTAT
ATGTAGTACAGCAGCTGGCACAGCTCCCACCAGGGGTGGTTGGGTGGGGA
CGGCCAGAACTATAGCCAGTCCCAGGGAAACTGGTTACCACGTGGAAAGT
CGAGGCAACGCTGGTGCCGGGAAGGAGCAACGTTTCCTCGCTGTTCGCCC
TAAAAACAATGCCAGGCCTTCCTGCCAGAAGGATGGCACTACTTGCAGCA
GGAGCACAATTTCCCCGTGCGCAACAGCACCGGAAAAGCGGAGAAAGTCA
ACCCTTGGGGGGGGCGACGTCGCCGATCGGGGTGACGCCGATCGGGGTGA
CGCAAAATTAGCTGAAGCGGCTCTCGCTGGACGAGTTGGCGGAAAAGAGG
GCAACGTCGCAGGTATAGAACTGTTAGAAGAGACTAGTAAACCAAAGGAG
TGCATCGACAATACGCGGCGGGACGGTCGCGTCCACCGCAGCGGCGACGG
CGGCGGCAGCAGCGTGGATACTCACGGTTACCACGTGAAGAGCAGTAGTC
GACACGATACGGCCCCGAAGGTGCTCTTGGCTCGCGAAACGGAAGCTTCG
CTTAGGCGCGAGCAGAGAGTGGCGGCGGCAAAGCACAAGGAAGAGAAAGA
GCTGCGCCTGTCATCCTCGTTCCGCGCCAAGGAGCTGCATGCCACAAACG
GCCCCGATTGGGCGACTATCAAGGCGCACCAAGACCTTGTCCGGAAGCAG
AGAACCAGAGATCGCGCCGCGTTTCTAGCCGCGACGTCTTCCCTTCCCGC
GCGCATGGCGCGACACGCTGTCATGCAGGCCGTTGCTGAAGATCGGGCCA
GTGCTAACGTGCGCAGCGGAGCTGGGGATAAGAGTGGTGAAGATGGTGGG
AGAGGGTCGATGGGCGGAGGGACGGGAACGATGGATCCGGGGGACATCGG
GCGGGTGATGCAGAGACGGCAAGAGAGGCGAGTCTTCGAGAACCCGTCGC
TCGCCGCCGCGAAGGCTTCCTCTCGAGTCGCCGTAACCCGGCCCCTCACC
CCGCCGATGGAAAGACGCCGCCTGGCTCAAGAGGCCAAGCGACGAGCGAA
GGAAAACGCCGATCAGAGCGCAAGAGAGGCGGCGGCGAATCAGCGGGTAC
AGGACGAAAGACGGCAGTTTCAACAGCTCGTCGAGATGCACCGGGCCACC
GGAAGCACCTTCAGAGAGACGAAAGCGTCCGTGAGGAAGGCCCAGGAGGC
ACGACAAAAGATTGTTGAGGACCTAGAGCAAGAGGAGCGAGAGCGAGCGG
TCGTGTTGGCGGAAGAGGCGCGTCGAAGAGAAGTCTCCCGCGCCGTCCGC
GAGTACGTGGTAGCATCGGAGGCTAGGAGGCGGGAGGATCACGGGGCTGG
GCCTCCCCTTAAAGAGCTCGTCCAACGAAAAAAGGAAGAGAAGCAGGCGG
AGTTCCGAGAGAGATGGAGGCTGAACCGATCGGGACTTCGCAAAGCTCTC
CGCAAGCGGCCC
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