mRNA_Ecto-sp8_S_contig947.31013.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig947.31013.1
Unique NamemRNA_Ecto-sp8_S_contig947.31013.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig947.31013.1 vs. uniprot
Match: D8LR85_ECTSI (Protein translocase subunit SecA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR85_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 1.220e-54
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:    1 SDIEAVRAGLSSESARFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKTSAAAGADK 285
            SDIEAVRAGLSSESARFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKTSAAAGADK
Sbjct:  842 SDIEAVRAGLSSESARFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKTSAAAGADK 936
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BLAST of mRNA_Ecto-sp8_S_contig947.31013.1 vs. uniprot
Match: A0A6H5KYN9_9PHAE (SecA_SW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN9_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 4.130e-53
Identity = 85/90 (94.44%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:   16 VRAGLSSESARFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKTSAAAGADK 285
            VR GLSSESARFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKT   AGA+K
Sbjct:   11 VRTGLSSESARFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKT---AGAEK 97
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BLAST of mRNA_Ecto-sp8_S_contig947.31013.1 vs. uniprot
Match: A0A835ZJ09_9STRA (Protein translocase subunit SecA n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ09_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.040e-24
Identity = 58/129 (44.96%), Postives = 70/129 (54.26%), Query Frame = 1 
Query:    4 DIEAVRAGLSSESARFLTLTQMDDLW-------------------------------------CQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKTSAAAGA 279
            +++ VR G   E+AR+LTLTQ+DDLW                                     C HL+ MNLLKESVSMEVFRG +PL+EF  QG+E+F DLL   RRN VYSL +YNP P   A A A
Sbjct:  891 ELDQVRPGPGLETARYLTLTQLDDLWIKSSYIPSTSTPPPQXXXXXXXXXXXXXXXXXXXXXXCDHLDRMNLLKESVSMEVFRGNDPLQEFKDQGRELFKDLLATARRNAVYSLFIYNPRPAAEAGAAA 1019
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BLAST of mRNA_Ecto-sp8_S_contig947.31013.1 vs. uniprot
Match: A0A6U4GUK1_9STRA (Protein translocase subunit SecA n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4GUK1_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 8.470e-20
Identity = 45/84 (53.57%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:    7 IEAVRAGLSSESARFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGR-NPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSP 255
            +E  RA L+  +AR+L LTQ D+LW + L  MNLLKE+V M  ++G  +PL+E+  +G ++F DLLDNVRRNTVYSL +Y P P
Sbjct:  856 LEKHRAELAGSAARYLALTQADNLWAEQLTRMNLLKEAVIMRKYQGGVDPLDEYRVEGGKLFDDLLDNVRRNTVYSLMVYQPGP 939
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BLAST of mRNA_Ecto-sp8_S_contig947.31013.1 vs. uniprot
Match: B9NYY1_PROMR (SecA Wing and Scaffold domain protein n=1 Tax=Prochlorococcus marinus str. MIT 9202 TaxID=93058 RepID=B9NYY1_PROMR)

HSP 1 Score: 83.2 bits (204), Expect = 7.440e-18
Identity = 36/88 (40.91%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 SDIEAVRAGLSSESARFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKTS 264
            S IE +R GL  E+ RF  L Q+D+LW +HL++M+ L+ESV +  +  ++PL E+  +G +MFL+++ N+RRN +YS+ M+ P  + +
Sbjct:   99 SQIEKIRPGLMREAERFFILQQIDNLWREHLQSMDSLRESVGLRGYGQKDPLIEYKNEGYDMFLEMMTNMRRNVIYSMFMFQPKTEVN 186
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BLAST of mRNA_Ecto-sp8_S_contig947.31013.1 vs. uniprot
Match: A0A3R7PI49_9SYNE (Preprotein translocase subunit SecA (Fragment) n=1 Tax=Synechococcus sp. TMED155 TaxID=1986592 RepID=A0A3R7PI49_9SYNE)

HSP 1 Score: 85.5 bits (210), Expect = 1.020e-17
Identity = 37/85 (43.53%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:    1 SDIEAVRAGLSSESARFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSP 255
            S+IE +R+GL  E+ RF  L Q+D+LW +HL++M+ L+ESV +  +  ++PL E+  +G +MFL+++  VRRN +YS+ M+ P P
Sbjct:  251 SEIEQLRSGLMREAERFFILQQIDNLWREHLQSMDALRESVGLRGYGQKDPLIEYKNEGYDMFLEMMTQVRRNVIYSMFMFQPQP 335
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BLAST of mRNA_Ecto-sp8_S_contig947.31013.1 vs. uniprot
Match: A0A1Z8NG09_9SYNE (Preprotein translocase subunit SecA (Fragment) n=1 Tax=Synechococcus sp. TMED19 TaxID=1986596 RepID=A0A1Z8NG09_9SYNE)

HSP 1 Score: 84.3 bits (207), Expect = 5.330e-17
Identity = 36/84 (42.86%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    4 DIEAVRAGLSSESARFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSP 255
            +IE +R+GL  E+ RF  L Q+D+LW +HL++M+ L+ESV +  +  ++PL E+  +G +MFL+++  VRRN +YS+ M+ P P
Sbjct:  404 EIEQLRSGLMREAERFFILQQIDNLWREHLQSMDALRESVGLRGYGQKDPLIEYKNEGYDMFLEMMTQVRRNVIYSMFMFQPQP 487
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BLAST of mRNA_Ecto-sp8_S_contig947.31013.1 vs. uniprot
Match: UPI0009A45755 (preprotein translocase subunit SecA n=1 Tax=Prochlorococcus sp. HOT212_60m_826P21 TaxID=1961099 RepID=UPI0009A45755)

HSP 1 Score: 83.2 bits (204), Expect = 1.460e-16
Identity = 36/88 (40.91%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 SDIEAVRAGLSSESARFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKTS 264
            S IE +R GL  E+ RF  L Q+D+LW +HL++M+ L+ESV +  +  ++PL E+  +G +MFL+++ N+RRN +YS+ M+ P  + +
Sbjct:  583 SQIEKIRPGLMREAERFFILQQIDNLWREHLQSMDSLRESVGLRGYGQKDPLIEYKNEGYDMFLEMMTNMRRNVIYSMFMFQPKTEVN 670
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BLAST of mRNA_Ecto-sp8_S_contig947.31013.1 vs. uniprot
Match: SECA_PROM2 (Protein translocase subunit SecA n=56 Tax=Prochlorococcus TaxID=1218 RepID=SECA_PROM2)

HSP 1 Score: 83.2 bits (204), Expect = 1.490e-16
Identity = 36/88 (40.91%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 SDIEAVRAGLSSESARFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKTS 264
            S IE +R GL  E+ RF  L Q+D+LW +HL++M+ L+ESV +  +  ++PL E+  +G +MFL+++ N+RRN +YS+ M+ P  + +
Sbjct:  853 SQIEKIRPGLMREAERFFILQQIDNLWREHLQSMDSLRESVGLRGYGQKDPLIEYKNEGYDMFLEMMTNMRRNVIYSMFMFQPKTEVN 940
[Close]
BLAST of mRNA_Ecto-sp8_S_contig947.31013.1 vs. uniprot
Match: A0A7S2S431_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S431_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.920e-16
Identity = 37/87 (42.53%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 SDIEAVRAGLSSESARFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKT 261
            S +E+VR G    SA++L L Q+D+ W  HL +MN LKESV +  ++G++ L+E+  +G +++       RRN VYSL +Y+P+PKT
Sbjct:  130 SSLESVREGQFWRSAQYLLLLQLDNGWASHLRSMNYLKESVVLRKYQGKDVLQEYVIEGAKLYDSFRAAARRNAVYSLMVYDPTPKT 216
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig947.31013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR85_ECTSI1.220e-54100.00Protein translocase subunit SecA n=1 Tax=Ectocarpu... [more]
A0A6H5KYN9_9PHAE4.130e-5394.44SecA_SW domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835ZJ09_9STRA4.040e-2444.96Protein translocase subunit SecA n=1 Tax=Tribonema... [more]
A0A6U4GUK1_9STRA8.470e-2053.57Protein translocase subunit SecA n=1 Tax=Phaeomona... [more]
B9NYY1_PROMR7.440e-1840.91SecA Wing and Scaffold domain protein n=1 Tax=Proc... [more]
A0A3R7PI49_9SYNE1.020e-1743.53Preprotein translocase subunit SecA (Fragment) n=1... [more]
A0A1Z8NG09_9SYNE5.330e-1742.86Preprotein translocase subunit SecA (Fragment) n=1... [more]
UPI0009A457551.460e-1640.91preprotein translocase subunit SecA n=1 Tax=Prochl... [more]
SECA_PROM21.490e-1640.91Protein translocase subunit SecA n=56 Tax=Prochlor... [more]
A0A7S2S431_9STRA2.920e-1642.53Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig947contigEcto-sp8_S_contig947:17449..17999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score191.4
Seed ortholog evalue1.9e-46
Seed eggNOG ortholog2880.D8LR85
Preferred namesecA
Model size288
KEGG koko:K03070
KEGG TC3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ATPase-coupled protein transmembrane transporter activity
EggNOG OGs2QS7I@2759,COG0653@1
Cds size288
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145305.232919-CDS-Ecto-sp8_S_contig947:17448..175621681145305.232919-CDS-Ecto-sp8_S_contig947:17448..17562Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig947 17449..17562 -
1681145305.2475467-CDS-Ecto-sp8_S_contig947:17825..179991681145305.2475467-CDS-Ecto-sp8_S_contig947:17825..17999Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig947 17826..17999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig947.31013.1prot_Ecto-sp8_S_contig947.31013.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig947 17449..17999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig947.31013.1

>prot_Ecto-sp8_S_contig947.31013.1 ID=prot_Ecto-sp8_S_contig947.31013.1|Name=mRNA_Ecto-sp8_S_contig947.31013.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=96bp
SDIEAVRAGLSSESARFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRN
PLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKTSAAAGADK*
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mRNA from alignment at Ecto-sp8_S_contig947:17449..17999-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig947.31013.1 ID=mRNA_Ecto-sp8_S_contig947.31013.1|Name=mRNA_Ecto-sp8_S_contig947.31013.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=551bp|location=Sequence derived from alignment at Ecto-sp8_S_contig947:17449..17999- (Ectocarpus species8 EcLAC_412)
TCGGACATCGAGGCAGTAAGGGCTGGGCTGTCGAGCGAGTCTGCACGGTT
CTTGACGCTGACCCAGATGGACGACCTGTGGTGTCAGCACCTGGAGAACA
TGAACCTCCTTAAGGAGAGCGTGTCGATGGAGGTTTTCAGGGGACGGAAC
CCCCTGGAGGAGTTTGGGGCACAGGTATCCTACGGACTTGAAAAAACGTT
GTACTCAGACATTGTGATTTTTGTCGTTGACTCAATTACTTTGGGGCACA
CATAGGCTACCCTGTACCGAGTTATTCTTGTGTGCATGTTTTACTTGGGG
AAAAATACTGTGCATGACTTCATTCGTTTTGTGACAGAGGTACAAGCTGC
TTTGTTCTGTGTTTGGCTTGTCTTCTTTGGAGCACGGGTAAGCTACCGAC
TTACGACGATCACCCTCCCCCCCGCTGTCTTTTGCAGGGCAAGGAGATGT
TCCTGGACCTGCTGGACAACGTACGGCGAAACACCGTGTACTCGTTGCAG
ATGTACAATCCCAGCCCAAAGACATCTGCGGCTGCTGGTGCCGATAAATA
A
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig947:17449..17999-

>mRNA_Ecto-sp8_S_contig947.31013.1 ID=mRNA_Ecto-sp8_S_contig947.31013.1|Name=mRNA_Ecto-sp8_S_contig947.31013.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp8_S_contig947:17449..17999- (Ectocarpus species8 EcLAC_412)
TCGGACATCGAGGCAGTAAGGGCTGGGCTGTCGAGCGAGTCTGCACGGTT
CTTGACGCTGACCCAGATGGACGACCTGTGGTGTCAGCACCTGGAGAACA
TGAACCTCCTTAAGGAGAGCGTGTCGATGGAGGTTTTCAGGGGACGGAAC
CCCCTGGAGGAGTTTGGGGCACAGGGCAAGGAGATGTTCCTGGACCTGCT
GGACAACGTACGGCGAAACACCGTGTACTCGTTGCAGATGTACAATCCCA
GCCCAAAGACATCTGCGGCTGCTGGTGCCGATAAATAA
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