mRNA_Ecto-sp8_S_contig946.30995.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig946.30995.1
Unique NamemRNA_Ecto-sp8_S_contig946.30995.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig946.30995.1 vs. uniprot
Match: D7FPT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPT5_ECTSI)

HSP 1 Score: 611 bits (1576), Expect = 2.450e-214
Identity = 409/500 (81.80%), Postives = 417/500 (83.40%), Query Frame = 1 
Query:   25 AAAASGGVEQVERSYEEVVVCRSSQRVIKGSAARRQKAEGAISGRVNGGG-YDGRRDKWVGLLEGSNEALWTCGRGGXXXXXXXXXTDDSARFLDLAINPSPWGAFVGGPPGMQKTPAARGGSGGSVQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENEENCISLGETPHDEETEKSNSARRGSRGGLSVPAGVVGTAGQTAQGTGGVAVPTPGGKVIFAGGGGGGCHPGGIVEDAELVVGARQLQPRTAFSPANKGSRYNN-SGLEKKAGETPAPAFSSRTIASGMLFDTQPPPSLARPTMPRTPAPSPXXXLSXXXXXXXLNKIGHTLGLTGSAIVPGVPAAPAAAGGTEPRSCHGTTTRRVFQHXXXXXXXXXXATTLAGWVKEAGGRWRNGENGSGNATATATGRYGFSTIAPSVVLDPRTANNNPHGDSGRRRARASGLVGKALRVRRPKQLVLGR 1518
            AAAASGG+EQVERSYEEVVVCRSSQRVIKGSAARRQKAEG ISGRV+GGG  DGRRDKWVGLLEG +EALWTCGRGGXXXXXXXXXTDD ARFLDLAINPSPWGAFVGGPPGM+KTPA RGGSGGSVQRQ             XXXXXXXXXXXXXXXX                          XXXXXXXXX ENEENCISLGETPH EETEKSNSARRGSRGGLSVPAGV GTAG TAQGTGGVAVPT GGK IFAGGGGGGCHPGG+V+DAELVV ARQLQPRTAFSP NKGS +NN SGLEK AGETPAPAFSSRTIASGMLFDTQPPPSLARP MPRTPA   XXX  XXXXXXX NKIGHTLGLTGSAIVPGV AAPAAAGGTEPR  HGT        XXXXXXXXX ATTLAGWVKEAGGRWR+GENGSGNATAT  GRY FSTIAPSVVLD RTANN  HG SGRRRA ASGLVGKALRVRRPKQLVLGR
Sbjct:   22 AAAASGGIEQVERSYEEVVVCRSSQRVIKGSAARRQKAEGPISGRVSGGGGNDGRRDKWVGLLEGPSEALWTCGRGGXXXXXXXXXTDDGARFLDLAINPSPWGAFVGGPPGMEKTPAVRGGSGGSVQRQLSKKRPSSAPRQPXXXXXXXXXXXXXXXXRTRTRPRSAHAASPSRQNAAGTFVTAXXXXXXXXXRENEENCISLGETPH-EETEKSNSARRGSRGGLSVPAGVDGTAGGTAQGTGGVAVPTQGGKEIFAGGGGGGCHPGGVVQDAELVVVARQLQPRTAFSPVNKGSHHNNNSGLEKMAGETPAPAFSSRTIASGMLFDTQPPPSLARPMMPRTPAXXXXXXXXXXXXXXXXNKIGHTLGLTGSAIVPGVAAAPAAAGGTEPRPRHGTXXXXXXXXXXXXXXXXXTATTLAGWVKEAGGRWRSGENGSGNATAT--GRYVFSTIAPSVVLDSRTANN-AHGGSGRRRAGASGLVGKALRVRRPKQLVLGR 517
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BLAST of mRNA_Ecto-sp8_S_contig946.30995.1 vs. uniprot
Match: A0A6H5KZW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZW5_9PHAE)

HSP 1 Score: 558 bits (1438), Expect = 2.780e-192
Identity = 368/508 (72.44%), Postives = 382/508 (75.20%), Query Frame = 1 
Query:    1 ATAAPAVKAAAASGGVEQVERSYEEVVVCRSSQRVIKGSAARRQKAEGAISGRVNGGGYDGRRDKWVGLLEGSNEALWTCGRGGXXXXXXXXXTDDSARFLDLAINPSPWGAFVGGPPGMQKTPAARGGSGGSVQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENEENCISLGETPHDEETEKSNSARRGSRGGLSVPAGVVGTAGQTAQGTGGVAVPTPGGKVIFAGGGGGG-CHPGGIVEDAELVVGARQLQPRTAFSPANKGSRYNNSGLEKKAGETPAPAFSSRTIASGMLFDTQPPPSLARPTMPRTPAPSPXXXLSXXXXXXXLNKIGHTLGLTGSAIVPGVPAAPAAAGGTEPRSCHGTTTRRVFQHXXXXXXXXXX-ATTLAGWVKEAGGRWRNGENGSGNATATATGRYGFSTIAPSVVLDPRTANNNPHGDSGRRRARASGLVGKALRVRRPKQLVLGR 1518
            ATAAPAVKAAAASGGVEQVERSY+EVVVCRS QRVIKGSAARRQKAEG ISGRV+G G  GRRDKWVGLLEGS+EALWTCGRG XXXXXXXXX    ARFLDLAINPSPWGAFVGGPPG++KT AARGGSGGSVQRQ                                                                 ENEENCISL ETPH EETEKS SARRGSR GLSV AGV GTAG+TAQGTGG AVPT G K I AG      CHPGG+V+DAELVV ARQLQPRTAFSPANKGS +N+S +EK AGETPAPAFSSRTIASGM F+TQPPPS ARP MPRTPAPS XXX  XXXXXXX NKIGHTLGLTGSAIVPGV AAPAAAGGTEPR  HGT        XXXXXXXXXX ATT+AGWVKEAGGRWRNGENGSGNATAT  GRYGFST APSVV D RTA N  HG SGRRRARASGLVGKALRVRRP Q+VLGR
Sbjct:   93 ATAAPAVKAAAASGGVEQVERSYQEVVVCRSRQRVIKGSAARRQKAEGPISGRVSGAGNGGRRDKWVGLLEGSSEALWTCGRGXXXXXXXXXXXXXDARFLDLAINPSPWGAFVGGPPGIEKTSAARGGSGGSVQRQLCKKRPSSAPRQAPTATAPTTGRSEEGGGRTRTRPRSAHAASPSRQNAAGNFVSAAYGGGGR---ENEENCISLEETPH-EETEKSKSARRGSRDGLSVTAGVDGTAGRTAQGTGGEAVPTQGSKAIIAGXXXXXXCHPGGVVQDAELVVVARQLQPRTAFSPANKGSHHNSS-VEKMAGETPAPAFSSRTIASGMFFNTQPPPSFARPMMPRTPAPSXXXXXXXXXXXXXXNKIGHTLGLTGSAIVPGVAAAPAAAGGTEPRPRHGTXXXXXXXXXXXXXXXXXXXATTVAGWVKEAGGRWRNGENGSGNATAT--GRYGFSTTAPSVVPDSRTAKN-VHGGSGRRRARASGLVGKALRVRRPTQIVLGR 592
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig946.30995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPT5_ECTSI2.450e-21481.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZW5_9PHAE2.780e-19272.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig946contigEcto-sp8_S_contig946:16230..18111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1521
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_001640.1
Cds size1521
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145304.0256903-CDS-Ecto-sp8_S_contig946:16229..168441681145304.0256903-CDS-Ecto-sp8_S_contig946:16229..16844Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig946 16230..16844 -
1681145304.0411277-CDS-Ecto-sp8_S_contig946:17205..181111681145304.0411277-CDS-Ecto-sp8_S_contig946:17205..18111Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig946 17206..18111 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig946.30995.1prot_Ecto-sp8_S_contig946.30995.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig946 16230..18111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig946.30995.1

>prot_Ecto-sp8_S_contig946.30995.1 ID=prot_Ecto-sp8_S_contig946.30995.1|Name=mRNA_Ecto-sp8_S_contig946.30995.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=507bp
ATAAPAVKAAAASGGVEQVERSYEEVVVCRSSQRVIKGSAARRQKAEGAI
SGRVNGGGYDGRRDKWVGLLEGSNEALWTCGRGGGGGENGDDDTDDSARF
LDLAINPSPWGAFVGGPPGMQKTPAARGGSGGSVQRQLSKKRPSSAPRQP
PTATAPPTGRSEEGGGRTTRPRSAHAASPSRHNAAGTFVTAAYGGGGGGG
GGENEENCISLGETPHDEETEKSNSARRGSRGGLSVPAGVVGTAGQTAQG
TGGVAVPTPGGKVIFAGGGGGGCHPGGIVEDAELVVGARQLQPRTAFSPA
NKGSRYNNSGLEKKAGETPAPAFSSRTIASGMLFDTQPPPSLARPTMPRT
PAPSPPPPLSPPAPPPPLNKIGHTLGLTGSAIVPGVPAAPAAAGGTEPRS
CHGTTTRRVFQHRQQQQQQQQTATTLAGWVKEAGGRWRNGENGSGNATAT
ATGRYGFSTIAPSVVLDPRTANNNPHGDSGRRRARASGLVGKALRVRRPK
QLVLGR*
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mRNA from alignment at Ecto-sp8_S_contig946:16230..18111-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig946.30995.1 ID=mRNA_Ecto-sp8_S_contig946.30995.1|Name=mRNA_Ecto-sp8_S_contig946.30995.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1882bp|location=Sequence derived from alignment at Ecto-sp8_S_contig946:16230..18111- (Ectocarpus species8 EcLAC_412)
GCCACCGCTGCCCCCGCCGTTAAGGCCGCGGCGGCGAGCGGGGGCGTCGA
ACAGGTCGAGCGGAGCTACGAAGAGGTCGTCGTCTGTAGGAGCAGCCAAA
GGGTGATCAAGGGTTCGGCGGCGCGGCGCCAGAAGGCCGAAGGCGCCATC
AGCGGCCGAGTCAACGGCGGCGGCTACGACGGGCGACGAGACAAGTGGGT
GGGACTTCTCGAGGGGTCAAACGAGGCGCTCTGGACGTGCGGCAGGGGAG
GGGGTGGCGGAGAGAACGGCGACGATGACACCGACGACAGCGCTCGCTTC
CTCGACCTCGCCATCAACCCATCCCCCTGGGGGGCGTTTGTGGGAGGGCC
GCCCGGCATGCAAAAGACCCCGGCTGCTAGAGGCGGCAGCGGTGGCAGCG
TGCAGAGGCAACTTAGCAAGAAGAGGCCGAGCAGCGCACCGCGCCAGCCT
CCAACGGCTACGGCCCCACCGACGGGACGGTCCGAGGAAGGCGGCGGCCG
CACTACTCGGCCGAGATCGGCACACGCGGCGTCTCCCTCGCGACACAACG
CCGCCGGAACTTTTGTCACCGCAGCCTACGGCGGCGGCGGCGGCGGCGGC
GGCGGAGAAAACGAAGAAAATTGCATTTCATTGGGAGAAACACCACATGA
TGAGGAGACGGAAAAGTCAAATTCGGCGCGGCGGGGATCGCGCGGTGGGT
TGTCAGTGCCGGCGGGCGTAGTTGGAACAGCAGGGCAAACGGCGCAAGGG
ACTGGCGGGGTAGCTGTGCCGACGCCGGGGGGCAAGGTGATTTTTGCTGG
CGGCGGAGGCGGCGGCTGCCACCCGGGAGGTATTGTTGAGGATGCCGAGC
TTGTTGTGGGTGCACGACAGCTGCAGCCGAGGACCGCGTTTTCTCCAGCA
AACAAGGTGTGATAGATGCGGCATACACCCTTCGTATACGTTTCGCTGCG
CTGCTTACGATGCTTTGGCCTTTGAGGTATGCGAACCAGGTCGCCGAAAA
TTCTGGCTCCATCTCTGGTTTTGGAAGCAGAATTACATATTATTCTAGTA
CATCATGGATGGCCATGACAAACCCCCCCGCCCCCACAACGCACACCACG
CCACACACACCACACGCCGCACGTACTTTGCTTGCCCATCCCCGTCGCTA
GCCCAGAGCAGAAACGTTGATACACGATCAGAACACCTAACTACCATATC
CACTTCTCATCTTCTCGCTTTCTTTCTCTCCTTCCCCCCGTTCCCCCCTC
CTTCAATTTTTCTCAAGGGAAGCCGCTACAATAATAGCGGCTTGGAAAAG
AAGGCTGGCGAAACGCCCGCTCCCGCCTTTTCATCTCGCACCATCGCCAG
TGGAATGCTCTTCGACACCCAACCGCCGCCTTCGCTCGCGCGACCAACGA
TGCCGCGGACGCCGGCGCCATCACCGCCACCACCGCTGTCCCCGCCTGCT
CCCCCCCCGCCGCTGAACAAAATCGGCCACACCCTCGGCTTAACCGGGTC
CGCCATTGTCCCGGGGGTACCGGCTGCGCCGGCAGCGGCGGGTGGGACGG
AACCCCGCTCCTGTCACGGGACCACTACGCGGCGAGTCTTTCAGCATCGG
CAGCAGCAGCAGCAGCAGCAGCAGACCGCAACGACGTTAGCGGGGTGGGT
GAAGGAAGCCGGTGGTAGGTGGAGGAACGGCGAGAACGGCAGCGGCAACG
CCACCGCCACCGCCACAGGACGATACGGTTTTTCGACCATAGCTCCGTCG
GTGGTGCTGGACCCGAGGACCGCCAACAACAACCCACACGGAGACAGCGG
CCGCCGTCGCGCGAGGGCTTCGGGGCTGGTGGGAAAAGCGCTGCGAGTCC
GGAGACCAAAACAATTAGTTCTGGGCCGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig946:16230..18111-

>mRNA_Ecto-sp8_S_contig946.30995.1 ID=mRNA_Ecto-sp8_S_contig946.30995.1|Name=mRNA_Ecto-sp8_S_contig946.30995.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1521bp|location=Sequence derived from alignment at Ecto-sp8_S_contig946:16230..18111- (Ectocarpus species8 EcLAC_412)
GCCACCGCTGCCCCCGCCGTTAAGGCCGCGGCGGCGAGCGGGGGCGTCGA
ACAGGTCGAGCGGAGCTACGAAGAGGTCGTCGTCTGTAGGAGCAGCCAAA
GGGTGATCAAGGGTTCGGCGGCGCGGCGCCAGAAGGCCGAAGGCGCCATC
AGCGGCCGAGTCAACGGCGGCGGCTACGACGGGCGACGAGACAAGTGGGT
GGGACTTCTCGAGGGGTCAAACGAGGCGCTCTGGACGTGCGGCAGGGGAG
GGGGTGGCGGAGAGAACGGCGACGATGACACCGACGACAGCGCTCGCTTC
CTCGACCTCGCCATCAACCCATCCCCCTGGGGGGCGTTTGTGGGAGGGCC
GCCCGGCATGCAAAAGACCCCGGCTGCTAGAGGCGGCAGCGGTGGCAGCG
TGCAGAGGCAACTTAGCAAGAAGAGGCCGAGCAGCGCACCGCGCCAGCCT
CCAACGGCTACGGCCCCACCGACGGGACGGTCCGAGGAAGGCGGCGGCCG
CACTACTCGGCCGAGATCGGCACACGCGGCGTCTCCCTCGCGACACAACG
CCGCCGGAACTTTTGTCACCGCAGCCTACGGCGGCGGCGGCGGCGGCGGC
GGCGGAGAAAACGAAGAAAATTGCATTTCATTGGGAGAAACACCACATGA
TGAGGAGACGGAAAAGTCAAATTCGGCGCGGCGGGGATCGCGCGGTGGGT
TGTCAGTGCCGGCGGGCGTAGTTGGAACAGCAGGGCAAACGGCGCAAGGG
ACTGGCGGGGTAGCTGTGCCGACGCCGGGGGGCAAGGTGATTTTTGCTGG
CGGCGGAGGCGGCGGCTGCCACCCGGGAGGTATTGTTGAGGATGCCGAGC
TTGTTGTGGGTGCACGACAGCTGCAGCCGAGGACCGCGTTTTCTCCAGCA
AACAAGGGAAGCCGCTACAATAATAGCGGCTTGGAAAAGAAGGCTGGCGA
AACGCCCGCTCCCGCCTTTTCATCTCGCACCATCGCCAGTGGAATGCTCT
TCGACACCCAACCGCCGCCTTCGCTCGCGCGACCAACGATGCCGCGGACG
CCGGCGCCATCACCGCCACCACCGCTGTCCCCGCCTGCTCCCCCCCCGCC
GCTGAACAAAATCGGCCACACCCTCGGCTTAACCGGGTCCGCCATTGTCC
CGGGGGTACCGGCTGCGCCGGCAGCGGCGGGTGGGACGGAACCCCGCTCC
TGTCACGGGACCACTACGCGGCGAGTCTTTCAGCATCGGCAGCAGCAGCA
GCAGCAGCAGCAGACCGCAACGACGTTAGCGGGGTGGGTGAAGGAAGCCG
GTGGTAGGTGGAGGAACGGCGAGAACGGCAGCGGCAACGCCACCGCCACC
GCCACAGGACGATACGGTTTTTCGACCATAGCTCCGTCGGTGGTGCTGGA
CCCGAGGACCGCCAACAACAACCCACACGGAGACAGCGGCCGCCGTCGCG
CGAGGGCTTCGGGGCTGGTGGGAAAAGCGCTGCGAGTCCGGAGACCAAAA
CAATTAGTTCTGGGCCGCTAG
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