mRNA_Ecto-sp8_S_contig94568.30989.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig94568.30989.1
Unique NamemRNA_Ecto-sp8_S_contig94568.30989.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig94568.30989.1 vs. uniprot
Match: D7FVN3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVN3_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 2.820e-49
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = 1 
Query:    1 QVEHVRLGIPTSVPLAVQQWDGLIAVNYEARKSGVKRGDRTAAAKQKCPQITLVHVETIGADDELDDAGTRHDKGACKVSLERY 252
            QVEHVRLGIPTSVPLAVQQWDGLIAVNYEARKSGVKRGDRT AAKQKCPQITLVHVETIGADDELDDAGTRHDKGACKVSLERY
Sbjct:   23 QVEHVRLGIPTSVPLAVQQWDGLIAVNYEARKSGVKRGDRTTAAKQKCPQITLVHVETIGADDELDDAGTRHDKGACKVSLERY 106
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BLAST of mRNA_Ecto-sp8_S_contig94568.30989.1 vs. uniprot
Match: A0A0G4ETT1_VITBC (UmuC domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ETT1_VITBC)

HSP 1 Score: 112 bits (281), Expect = 3.320e-27
Identity = 57/87 (65.52%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:    1 QVEHVRLGIPTSVPLAVQQWDGLIAVNYEARKSGVKRGDRTAAAKQKCPQITLVHVETIGADDE---LDDAGTRHDKGACKVSLERY 252
            QVEH RL I   VPLAVQQWDGLIAVNY AR +GV+RGDRTA AK KCP + LVHVETI +D      DD   RHD+   KVSL+RY
Sbjct:   30 QVEHRRLNIARDVPLAVQQWDGLIAVNYPARAAGVRRGDRTAVAKGKCPDLVLVHVETISSDGRHPGSDDPADRHDRQREKVSLDRY 116
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BLAST of mRNA_Ecto-sp8_S_contig94568.30989.1 vs. uniprot
Match: A0A7S2SVU0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVU0_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.670e-23
Identity = 44/62 (70.97%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 QVEHVRLGIPTSVPLAVQQWDGLIAVNYEARKSGVKRGDRTAAAKQKCPQITLVHVETIGAD 186
            QVEH RL IP S PLAVQQW+GLIAVNY AR  GV+RGDR   AK KCP +  VHVETIG D
Sbjct:   13 QVEHRRLSIPMSTPLAVQQWEGLIAVNYAARAFGVRRGDRVDVAKAKCPALVFVHVETIGED 74
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BLAST of mRNA_Ecto-sp8_S_contig94568.30989.1 vs. uniprot
Match: A0A2R6VZP2_MARPO (UmuC domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6VZP2_MARPO)

HSP 1 Score: 97.8 bits (242), Expect = 7.240e-22
Identity = 49/83 (59.04%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:    4 VEHVRLGIPTSVPLAVQQWDGLIAVNYEARKSGVKRGDRTAAAKQKCPQITLVHVETIGADDELDDAGTRHDKGACKVSLERY 252
            VEHVRLGIP  VPLAVQQW+GLIA+NY AR +G+ R +R   A +KCP++  VHVETIG      D  +R   G  KVSLERY
Sbjct:   33 VEHVRLGIPREVPLAVQQWEGLIAINYAARAAGITRHERVHQAMRKCPELKCVHVETIGDGSGNVDGTSR---GHAKVSLERY 112
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BLAST of mRNA_Ecto-sp8_S_contig94568.30989.1 vs. uniprot
Match: U6JXD1_9EIME (UmuC domain-containing protein n=1 Tax=Eimeria mitis TaxID=44415 RepID=U6JXD1_9EIME)

HSP 1 Score: 97.4 bits (241), Expect = 8.090e-22
Identity = 51/84 (60.71%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    1 QVEHVRLGIPTSVPLAVQQWDGLIAVNYEARKSGVKRGDRTAAAKQKCPQITLVHVETIGADDELDDAGTRHDKGACKVSLERY 252
            QVEH RLGIP  VPLAV+QWD +IAVNY AR  GVKRG R    +  CP I LVHVETI A D+ D   T+ D  A KV+L+RY
Sbjct:   21 QVEHRRLGIPRHVPLAVRQWDSVIAVNYPARAMGVKRGQRVETVRSLCPSIELVHVETISARDKGD--RTQPDWKADKVTLQRY 102
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BLAST of mRNA_Ecto-sp8_S_contig94568.30989.1 vs. uniprot
Match: A0A2K1JJV7_PHYPA (UmuC domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JJV7_PHYPA)

HSP 1 Score: 95.5 bits (236), Expect = 4.650e-21
Identity = 51/86 (59.30%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    4 VEHVRLGIPTSVPLAVQQWDGLIAVNYEARKSGVKRGDRTAAAKQKCPQITLVHVETIGADDELDDAGTRHD---KGACKVSLERY 252
            VE VRLGIPT  PLAVQQWDGLIAVNY AR  G+ R +R + A +KCP + LVHVETIG D      GT      +G  K SLERY
Sbjct:   22 VEQVRLGIPTEQPLAVQQWDGLIAVNYAARAVGIVRHERVSEALRKCPDLHLVHVETIGGDKP----GTPESLGPRGNAKASLERY 103
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BLAST of mRNA_Ecto-sp8_S_contig94568.30989.1 vs. uniprot
Match: A0A7S2SV00_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV00_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.170e-20
Identity = 44/62 (70.97%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 QVEHVRLGIPTSVPLAVQQWDGLIAVNYEARKSGVKRGDRTAAAKQKCPQITLVHVETIGAD 186
            QVEH RL IP S PLAVQQW+GLIAVNY AR  GV+RGDR   AK KCP +  VHVETIG D
Sbjct:   13 QVEHRRLSIPMSTPLAVQQWEGLIAVNYAARAFGVRRGDRVDVAKAKCPALVFVHVETIGED 74
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BLAST of mRNA_Ecto-sp8_S_contig94568.30989.1 vs. uniprot
Match: U6MN54_9EIME (UmuC domain-containing protein (Fragment) n=1 Tax=Eimeria necatrix TaxID=51315 RepID=U6MN54_9EIME)

HSP 1 Score: 93.2 bits (230), Expect = 2.350e-20
Identity = 51/85 (60.00%), Postives = 56/85 (65.88%), Query Frame = 1 
Query:    1 QVEHVRLGIPTSVPLAVQQWDGLIAVNYEARKSGVKRGDRTAAAKQKCPQITLVHVETIGADDELDDAGTRHDKG-ACKVSLERY 252
            QVEH RLGIP   PLAVQQWD +IAVNY AR  GVKRG R  A K  CPQI LVHV+T+ A      AG R     A KV+L+RY
Sbjct:   21 QVEHRRLGIPRDQPLAVQQWDNVIAVNYPARACGVKRGQRVEAVKALCPQIKLVHVQTLAA---AGGAGGREPNWRAEKVTLQRY 102
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BLAST of mRNA_Ecto-sp8_S_contig94568.30989.1 vs. uniprot
Match: M2WZS1_GALSU (DNA polymerase eta subunit n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WZS1_GALSU)

HSP 1 Score: 92.4 bits (228), Expect = 5.290e-20
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:    1 QVEHVRLGIPTSVPLAVQQWDGLIAVNYEARKSGVKRGDRTAAAKQKCPQITLVHVETIGADDELDDAGT-------RHDKGACKVSLERY 252
            QVE VRLG+  S PL VQQWDG+IAVNY AR+ G+ R +R    K+KCP   LVHVET+G  D+              H K   KVSL+RY
Sbjct:   31 QVESVRLGLDPSTPLCVQQWDGVIAVNYAAREYGISRHERIEKVKEKCPNCVLVHVETVGFPDQSSSRENVSNPDLLNHGKSETKVSLDRY 121
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BLAST of mRNA_Ecto-sp8_S_contig94568.30989.1 vs. uniprot
Match: A0A5J4XV11_9CHLO (UmuC domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XV11_9CHLO)

HSP 1 Score: 92.4 bits (228), Expect = 5.650e-20
Identity = 48/86 (55.81%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:    1 QVEHVRLGIPTSVPLAVQQWDGLIAVNYEARKSGVKRGDRTAAAKQKCPQITLVHVETIGADDEL--DDAGTRHDKGACKVSLERY 252
            QVE  R+GIP  +P AVQQW+GLIAVNY AR +G+ R  R A AK KCP++  VHVETIG D     D A T  D+   K  LERY
Sbjct:   23 QVEMKRVGIPAHIPCAVQQWEGLIAVNYPARAAGITRHMRRAEAKAKCPELQCVHVETIGGDAGAGNDSAVTWEDRKTQKACLERY 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94568.30989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVN3_ECTSI2.820e-4998.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0G4ETT1_VITBC3.320e-2765.52UmuC domain-containing protein n=2 Tax=Vitrella br... [more]
A0A7S2SVU0_9STRA5.670e-2370.97Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A2R6VZP2_MARPO7.240e-2259.04UmuC domain-containing protein n=2 Tax=Marchantia ... [more]
U6JXD1_9EIME8.090e-2260.71UmuC domain-containing protein n=1 Tax=Eimeria mit... [more]
A0A2K1JJV7_PHYPA4.650e-2159.30UmuC domain-containing protein n=2 Tax=Physcomitri... [more]
A0A7S2SV00_9STRA1.170e-2070.97Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
U6MN54_9EIME2.350e-2060.00UmuC domain-containing protein (Fragment) n=1 Tax=... [more]
M2WZS1_GALSU5.290e-2050.55DNA polymerase eta subunit n=1 Tax=Galdieria sulph... [more]
A0A5J4XV11_9CHLO5.650e-2055.81UmuC domain-containing protein n=1 Tax=Trebouxia s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94568contigEcto-sp8_S_contig94568:12..269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score174.5
Seed ortholog evalue2.2e-41
Seed eggNOG ortholog2880.D7FVN3
Preferred nameeso1
Model size258
KEGG koko:K03509,ko:K03510
KEGG Pathwayko01524,ko03460,map01524,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008080,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0022402,GO:0031974,GO:0031981,GO:0033554,GO:0034061,GO:0034085,GO:0034086,GO:0034087,GO:0034088,GO:0034641,GO:0034645,GO:0034654,GO:0035861,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0052858,GO:0070013,GO:0070601,GO:0070987,GO:0071704,GO:0071840,GO:0071897,GO:0071960,GO:0071962,GO:0090304,GO:0090734,GO:0098813,GO:0140014,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1903047
Exons1
EggNOG free text desc.DNA synthesis involved in DNA repair
EggNOG OGsCOG0389@1,KOG2095@2759
EC2.7.7.7
Cds size258
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145303.6020591-CDS-Ecto-sp8_S_contig94568:11..2691681145303.6020591-CDS-Ecto-sp8_S_contig94568:11..269Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94568 12..269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94568.30989.1prot_Ecto-sp8_S_contig94568.30989.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig94568 12..269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig94568.30989.1

>prot_Ecto-sp8_S_contig94568.30989.1 ID=prot_Ecto-sp8_S_contig94568.30989.1|Name=mRNA_Ecto-sp8_S_contig94568.30989.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=86bp
QVEHVRLGIPTSVPLAVQQWDGLIAVNYEARKSGVKRGDRTAAAKQKCPQ
ITLVHVETIGADDELDDAGTRHDKGACKVSLERYER
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mRNA from alignment at Ecto-sp8_S_contig94568:12..269+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig94568.30989.1 ID=mRNA_Ecto-sp8_S_contig94568.30989.1|Name=mRNA_Ecto-sp8_S_contig94568.30989.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=258bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94568:12..269+ (Ectocarpus species8 EcLAC_412)
CAGGTGGAGCACGTGCGCCTGGGCATCCCGACGTCGGTCCCGCTGGCCGT
GCAGCAATGGGACGGGCTGATCGCCGTCAACTACGAGGCCAGGAAGTCCG
GCGTAAAGCGCGGCGACAGGACCGCCGCCGCCAAGCAGAAGTGCCCGCAA
ATCACTCTCGTTCATGTCGAGACCATCGGGGCAGACGACGAGCTGGACGA
TGCGGGGACACGGCACGACAAGGGAGCCTGCAAGGTGTCTCTGGAGAGGT
ATGAACGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig94568:12..269+

>mRNA_Ecto-sp8_S_contig94568.30989.1 ID=mRNA_Ecto-sp8_S_contig94568.30989.1|Name=mRNA_Ecto-sp8_S_contig94568.30989.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94568:12..269+ (Ectocarpus species8 EcLAC_412)
CAGGTGGAGCACGTGCGCCTGGGCATCCCGACGTCGGTCCCGCTGGCCGT
GCAGCAATGGGACGGGCTGATCGCCGTCAACTACGAGGCCAGGAAGTCCG
GCGTAAAGCGCGGCGACAGGACCGCCGCCGCCAAGCAGAAGTGCCCGCAA
ATCACTCTCGTTCATGTCGAGACCATCGGGGCAGACGACGAGCTGGACGA
TGCGGGGACACGGCACGACAAGGGAGCCTGCAAGGTGTCTCTGGAGAGGT
ATGAACGA
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