mRNA_Ecto-sp8_S_contig9454.30986.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9454.30986.1
Unique NamemRNA_Ecto-sp8_S_contig9454.30986.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9454.30986.1 vs. uniprot
Match: A0A6H5JIZ3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ3_9PHAE)

HSP 1 Score: 533 bits (1374), Expect = 3.500e-188
Identity = 278/300 (92.67%), Postives = 288/300 (96.00%), Query Frame = 1
Query:    1 MKNLGPLSAFITLVAVVCLGRQLKRIHDLSNMGRDIRLVGIILLICVPVFMAIRVLLGSILAFKYFFVIFMTISHPPIVWILNIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRRGSSSTIGGEGVTSDVSQNPSQHSRESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGLVDGDANGSAEEENEAPTHTSGLGDVAAIVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFASLDQDARLLIFVKAEREIRRILEDNLMARFLASAQYKRAVDGDGHGRV 900
            M NL PLSAF+TL+AVVCLGRQLKRIHDLSNMGRDIRLVGIILLIC+PVF AIRVL GSILAFKYFFVIF+TISHPPIVWILNIRPIQEVLHHAPRNSIPKGVQ+LLALSSRRR G +STI GE VT DVSQNPS+HSRESYV+SNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEG VDGDANGSAEEENEAPTHTSGLGDVA +VNEYIKDGAPSEINIGSDTK DIMELAKVEAFASLDQDARLLIFV+AEREIRRILEDNLMARFLASAQYKRAVDGDGHGRV
Sbjct:  148 MTNLAPLSAFVTLMAVVCLGRQLKRIHDLSNMGRDIRLVGIILLICLPVFTAIRVLWGSILAFKYFFVIFITISHPPIVWILNIRPIQEVLHHAPRNSIPKGVQVLLALSSRRRGGITSTIVGEAVTPDVSQNPSRHSRESYVESNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVDGDANGSAEEENEAPTHTSGLGDVATMVNEYIKDGAPSEINIGSDTKRDIMELAKVEAFASLDQDARLLIFVQAEREIRRILEDNLMARFLASAQYKRAVDGDGHGRV 447          
BLAST of mRNA_Ecto-sp8_S_contig9454.30986.1 vs. uniprot
Match: D7G0P5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P5_ECTSI)

HSP 1 Score: 504 bits (1298), Expect = 5.910e-179
Identity = 267/300 (89.00%), Postives = 276/300 (92.00%), Query Frame = 1
Query:    1 MKNLGPLSAFITLVAVVCLGRQLKRIHDLSNMGRDIRLVGIILLICVPVFMAIRVLLGSILAFKYFFVIFMTISHPPIVWILNIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRRGSSSTIGGEGVTSDVSQNPSQHSRESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGLVDGDANGSAEEENEAPTHTSGLGDVAAIVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFASLDQDARLLIFVKAEREIRRILEDNLMARFLASAQYKRAVDGDGHGRV 900
            M NL P+S FIT+ AVVCLGRQLKRIHDLSNMGRDIRLVGIILLICVPVF AI+VL  S LAFKYF V+ MT+SHP IVWILNIRPIQEVLHHAPRNSIPKGVQMLLALSSRRR GSSS IGGE VT+DV+QNPSQH RESYVDSNRLAGIMNYLPLREAFGEFCQKS CSE   FLLDASEFRGVIVEG V+GDANGSAEEENEAPT TSGLGDVAA+VNEYIKDGAPSEINIGSDTKHDIMELAKVEAF SLDQDAR LIF KAEREIRRILEDNLMARFLASAQYKRAVDGDGHGRV
Sbjct:    1 MTNLDPVSVFITITAVVCLGRQLKRIHDLSNMGRDIRLVGIILLICVPVFTAIQVLPLSTLAFKYFSVVSMTLSHPAIVWILNIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRGGSSSAIGGEAVTTDVTQNPSQHGRESYVDSNRLAGIMNYLPLREAFGEFCQKSFCSE---FLLDASEFRGVIVEGPVEGDANGSAEEENEAPTRTSGLGDVAAMVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFTSLDQDARRLIFGKAEREIRRILEDNLMARFLASAQYKRAVDGDGHGRV 297          
BLAST of mRNA_Ecto-sp8_S_contig9454.30986.1 vs. uniprot
Match: D7G0P6_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P6_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 6.770e-131
Identity = 205/233 (87.98%), Postives = 209/233 (89.70%), Query Frame = 1
Query:  247 NIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRRGSSSTIGGEGVTSDVSQNPSQHSRESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGLVDGDANGSAEEENEAPTHTSGLGDVAAIVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFASL---------------DQDARLLIFVKAEREIRRILEDNLMARFLASAQYKRAVDGDGHGRV 900
            NIRPIQEVLHHAPRNSIPKGVQMLLALSSRRR GSSS IGGE VT+DV+QNPSQH RESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEG V+GDANGSAEEENEAP HTSGLGDVAA+VNEYIKDGAPSEINIGSDTKH IMELAKVEAFASL               DQDAR LIFVKAEREIRRILEDNLMARFLASAQYKRAVDGDG GRV
Sbjct:  144 NIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRGGSSSPIGGEAVTTDVTQNPSQHGRESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVEGDANGSAEEENEAPAHTSGLGDVAAMVNEYIKDGAPSEINIGSDTKHAIMELAKVEAFASLEQGRQGGRLEAFALLDQDARKLIFVKAEREIRRILEDNLMARFLASAQYKRAVDGDGDGRV 376          
BLAST of mRNA_Ecto-sp8_S_contig9454.30986.1 vs. uniprot
Match: A0A6H5JD29_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD29_9PHAE)

HSP 1 Score: 376 bits (965), Expect = 5.220e-129
Identity = 197/223 (88.34%), Postives = 208/223 (93.27%), Query Frame = 1
Query:  247 NIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRRGSSSTIGGEGVTSDVSQNPSQHSRESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSE-----SFQFLLDASEFRGVIVEGLVDGDANGSAEEENEAPTHTSGLGDVAAIVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFASLDQDARLLIFVKAEREIRRILEDNLMARFLASAQYKRAVDGDGHGRV 900
            NIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRR SS+ IGGE VT+DV+ NPS+HSRESYVDSNRLAG+MNYLPLREAFGEFCQKSLCSE     SF+FLLDAS+F+GVIVEG VDGDANGSAEEE EAPTHTSGLGDV A+VNEYIKDGAPSEINIGSDTKHDIMELAKVEAFASLDQDAR LIFVKAEREI+ ILEDN+MARFLASAQYKRAVDGD HGRV
Sbjct:   28 NIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRR-SSAAIGGEAVTADVTHNPSRHSRESYVDSNRLAGLMNYLPLREAFGEFCQKSLCSEISRCVSFRFLLDASKFKGVIVEGPVDGDANGSAEEEIEAPTHTSGLGDVVAMVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFASLDQDARKLIFVKAEREIKMILEDNIMARFLASAQYKRAVDGDDHGRV 249          
BLAST of mRNA_Ecto-sp8_S_contig9454.30986.1 vs. uniprot
Match: A0A6H5J8W8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W8_9PHAE)

HSP 1 Score: 373 bits (958), Expect = 1.650e-126
Identity = 196/218 (89.91%), Postives = 202/218 (92.66%), Query Frame = 1
Query:  247 NIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRRGSSSTIGGEGVTSDVSQNPSQHSRESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGLVDGDANGSAEEENEAPTHTSGLGDVAAIVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFASLDQDARLLIFVKAEREIRRILEDNLMARFLASAQYKRAVDGDGHGRV 900
            NIRPIQEVL+HA RN IPKGVQMLLALSSR RR S+STIGGE VTSDV+QNPSQHSRE Y+DSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEG VDGDANGSAEEENEAPT    LGDVA +VNEYIKDGAPSEINIGSDTKHDIMELAK EAFASLDQDAR LIFVKAEREI+RILEDNLMARFL SAQYKRAVDGDG GRV
Sbjct:  129 NIRPIQEVLYHARRNGIPKGVQMLLALSSRARRRSTSTIGGEEVTSDVTQNPSQHSREPYIDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVDGDANGSAEEENEAPTRR--LGDVATMVNEYIKDGAPSEINIGSDTKHDIMELAKAEAFASLDQDARKLIFVKAEREIKRILEDNLMARFLVSAQYKRAVDGDGDGRV 344          
BLAST of mRNA_Ecto-sp8_S_contig9454.30986.1 vs. uniprot
Match: D7G3E2_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E2_ECTSI)

HSP 1 Score: 346 bits (887), Expect = 5.880e-118
Identity = 182/196 (92.86%), Postives = 184/196 (93.88%), Query Frame = 1
Query:  313 MLLALSSRRRRGSSSTIGGEGVTSDVSQNPSQHSRESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGLVDGDANGSAEEENEAPTHTSGLGDVAAIVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFASLDQDARLLIFVKAEREIRRILEDNLMARFLASAQYKRAVDGDGHGRV 900
            MLLALSSRRR GSSSTIGGE  TSDV+QNPSQ SRESYVDSNRLAGIMNYLPLREAFGEFCQKSLC ESFQFL DASEFRGVIVEG VDGDANGSAEEE EAP HTSGLGDVAA+VNEYIKDGAPSEINIGSD KHDIMELAKVE FASLDQDARLLIFVKAEREIRRILEDNLMARFLASAQYKRAVDGDG GRV
Sbjct:    1 MLLALSSRRRXGSSSTIGGEEDTSDVTQNPSQRSRESYVDSNRLAGIMNYLPLREAFGEFCQKSLCGESFQFLRDASEFRGVIVEGPVDGDANGSAEEEQEAPVHTSGLGDVAAMVNEYIKDGAPSEINIGSDIKHDIMELAKVETFASLDQDARLLIFVKAEREIRRILEDNLMARFLASAQYKRAVDGDGDGRV 196          
BLAST of mRNA_Ecto-sp8_S_contig9454.30986.1 vs. uniprot
Match: D7G0P7_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P7_ECTSI)

HSP 1 Score: 296 bits (757), Expect = 3.180e-98
Identity = 164/218 (75.23%), Postives = 173/218 (79.36%), Query Frame = 1
Query:  247 NIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRRGSSSTIGGEGVTSDVSQNPSQHSRESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGLVDGDANGSAEEENEAPTHTSGLGDVAAIVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFASLDQDARLLIFVKAEREIRRILEDNLMARFLASAQYKRAVDGDGHGRV 900
            NIRPIQEVL HA RNSIPKGVQMLLALSSRRRRGSSSTIGGE V SDV+QNPSQH RESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSE           RG                 E    TH   +G VAA+VNEY+KDGAPSEINI S+TKH+IMEL K+EAFASLDQDAR LIFVKAEREIR +LEDNLMA+FLASAQYKRAVDGDGHGRV
Sbjct:    4 NIRPIQEVLRHAGRNSIPKGVQMLLALSSRRRRGSSSTIGGEEVISDVTQNPSQHGRESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSE---------RRRG-----------------EGGTNTHER-VGGVAAMVNEYVKDGAPSEINISSNTKHNIMELTKIEAFASLDQDARKLIFVKAEREIRSMLEDNLMAKFLASAQYKRAVDGDGHGRV 194          
BLAST of mRNA_Ecto-sp8_S_contig9454.30986.1 vs. uniprot
Match: D8LTR6_ECTSI (Developmental regulator FlbA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR6_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 2.520e-60
Identity = 129/297 (43.43%), Postives = 178/297 (59.93%), Query Frame = 1
Query:    1 MKNLGPLSAFITLVAVVCLGRQLKRIHDLSNMGRDIRLVGIILLICVPVFMAIRVLLGSILAFKYFFVIFMTISHPPIVWILNIRPIQEVLHHAP-RNSIPKGVQMLLALSSRRRRGSSSTIGGEGVTSDVSQNPSQHSRESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGLVDGDANGSAEEENEAPTHTSGLGDVAAIVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFASLDQDARLLIFVKAEREIRRILEDNLMARFLASAQYKRAVDGDG 888
            +  L   S   T+VA V +G +L ++ DL +M  DIR+VG++LL+   V   +  +  S + +KY+ ++ M +SHPPIVW+ NIRP++EV  + P R    K  Q    L S  RR S+  I   GV +D + N    + E Y+D NRL  IMN+ PLREAFGEFC++SLC ESFQFL+D  EF+ +I +         SA EE E      G G   A+VN+YIKDG+ SE+NI S TK  IM+  K  A+A+L  + R  IF  AEREI+ +L DNL+ +FL S  Y + VD +G
Sbjct:  157 LATLELFSGSTTVVAGVLVGGRLNKVDDLLHMSTDIRVVGMLLLLMSCVHAGLHYVSMSPMEYKYYTIVLMALSHPPIVWLTNIRPVREVERNIPARRRSRKDFQ----LPSPYRRWSTKNI-RVGVAADENNNSLPWNGEVYLDDNRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFKDLIAD---------SAAEETEKSF--GGFGGYLAVVNDYIKDGSHSEVNIASTTKRSIMQHMKFTAYAALKLEDRKDIFGPAEREIKIVLADNLLNKFLVSDPYTKVVDFEG 437          
BLAST of mRNA_Ecto-sp8_S_contig9454.30986.1 vs. uniprot
Match: A0A6H5KX00_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX00_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 1.070e-54
Identity = 122/285 (42.81%), Postives = 168/285 (58.95%), Query Frame = 1
Query:   34 TLVAVVCLGRQLKRIHDLSNMGRDIRLVGIILLICVPVFMAIRVLLGSILAFKYFFVIFMTISHPPIVWILNIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRRGSSSTIGGEGVTSDVSQNPSQHSRESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGLVDGDANGSAEEENEAPTHTSGLGDVAAIVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFASLDQDARLLIFVKAEREIRRILEDNLMARFLASAQYKRAVDGDG 888
            T+VA V LG +L ++ DL +M  DIR+VG ILL+   V   +  L  S   ++Y  +    + HPPIVW++NIRP+ EV  + P     +  +    L S  RR S+  I   GV +D   N    + E+Y++ NRL  IMN+ PLREAFGEFC++SLC ESFQFL+D  EF+ +I +         SA E +E      G G   AIVN+YIKDG+ SE+NI S TK  IM+  K  A+A+L  + R  +F  AEREI+ +L DNL+ +FL S  Y + VD +G
Sbjct:  168 TVVAGVLLGGRLNKVDDLLHMSTDIRVVGTILLLMTCVHKGLPYLSMSPTEYQYCKITLTALLHPPIVWLINIRPVLEVGRNIPAR---RRSRKSFHLPSPFRRRSTKNI-RVGVAADEDINTLPWNGEAYLNDNRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFKDLIAD---------SAAETSEKSF--GGFGGYLAIVNDYIKDGSHSEVNIASTTKRSIMQYMKFAAYAALQLEERKDLFGPAEREIKIVLADNLLNKFLVSDPYTKVVDFEG 437          
BLAST of mRNA_Ecto-sp8_S_contig9454.30986.1 vs. uniprot
Match: A0A6H5KVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVN6_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.230e-19
Identity = 53/84 (63.10%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    1 MKNLGPLSAFITLVAVVCLGRQLKRIHDLSNMGRDIRLVGIILLICV--PVFMAIRVLLGSILAFKYFFVIFMTISHPPIVWIL 246
            M NL P+S FIT+ AVVCLGRQLKRIHDL NMGR    VG +  + +   VF AI+VL  S LAFKYF ++FMT+SHP IVWIL
Sbjct:  137 MTNLDPVSVFITITAVVCLGRQLKRIHDLRNMGRMFAWVGSLAHVRMLGAVFTAIQVLPLSALAFKYFSIVFMTLSHPAIVWIL 220          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9454.30986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JIZ3_9PHAE3.500e-18892.67RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0P5_ECTSI5.910e-17989.00RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0P6_ECTSI6.770e-13187.98RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JD29_9PHAE5.220e-12988.34RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5J8W8_9PHAE1.650e-12689.91RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G3E2_ECTSI5.880e-11892.86RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0P7_ECTSI3.180e-9875.23RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LTR6_ECTSI2.520e-6043.43Developmental regulator FlbA n=1 Tax=Ectocarpus si... [more]
A0A6H5KX00_9PHAE1.070e-5442.81RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KVN6_9PHAE4.230e-1963.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9454contigEcto-sp8_S_contig9454:1965..5730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score506.1
Seed ortholog evalue1.1e-140
Seed eggNOG ortholog2880.D7G0P5
Model size903
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2D0MX@1,2SERP@2759
Cds size903
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145303.3267376-CDS-Ecto-sp8_S_contig9454:1964..21061681145303.3267376-CDS-Ecto-sp8_S_contig9454:1964..2106Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9454 1965..2106 +
1681145303.3412206-CDS-Ecto-sp8_S_contig9454:2759..28621681145303.3412206-CDS-Ecto-sp8_S_contig9454:2759..2862Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9454 2760..2862 +
1681145303.352866-CDS-Ecto-sp8_S_contig9454:3303..35741681145303.352866-CDS-Ecto-sp8_S_contig9454:3303..3574Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9454 3304..3574 +
1681145303.369475-CDS-Ecto-sp8_S_contig9454:4267..45191681145303.369475-CDS-Ecto-sp8_S_contig9454:4267..4519Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9454 4268..4519 +
1681145303.3823211-CDS-Ecto-sp8_S_contig9454:5595..57301681145303.3823211-CDS-Ecto-sp8_S_contig9454:5595..5730Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9454 5596..5730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9454.30986.1prot_Ecto-sp8_S_contig9454.30986.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9454 1965..5730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9454.30986.1

>prot_Ecto-sp8_S_contig9454.30986.1 ID=prot_Ecto-sp8_S_contig9454.30986.1|Name=mRNA_Ecto-sp8_S_contig9454.30986.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=301bp
MKNLGPLSAFITLVAVVCLGRQLKRIHDLSNMGRDIRLVGIILLICVPVF
MAIRVLLGSILAFKYFFVIFMTISHPPIVWILNIRPIQEVLHHAPRNSIP
KGVQMLLALSSRRRRGSSSTIGGEGVTSDVSQNPSQHSRESYVDSNRLAG
IMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGLVDGDANGSA
EEENEAPTHTSGLGDVAAIVNEYIKDGAPSEINIGSDTKHDIMELAKVEA
FASLDQDARLLIFVKAEREIRRILEDNLMARFLASAQYKRAVDGDGHGRV
*
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mRNA from alignment at Ecto-sp8_S_contig9454:1965..5730+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9454.30986.1 ID=mRNA_Ecto-sp8_S_contig9454.30986.1|Name=mRNA_Ecto-sp8_S_contig9454.30986.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3766bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9454:1965..5730+ (Ectocarpus species8 EcLAC_412)
ATGAAGAACCTGGGCCCGCTCTCGGCGTTCATCACTCTCGTGGCGGTGGT ATGCCTCGGCCGCCAGTTGAAGCGGATCCACGACCTCAGCAACATGGGCC GGGATATTCGCCTGGTTGGGATAATTTTACTGATATGTGTACGTGAGTGA TGGCATTGACAACGCCAAATGACTGCATGTGTTGTAGTCAAATTCCTTCG CGTGACATATCTTGGTGGTTCTTGTTGAGGAGCTCTGCCCGGAGCACCGG TATCGTGGTTTTGGTAGTCCGACGCACTTGTAAGCATGAGCCACCGCCGC AAGTACCTGCCCTGCATCGGGACTGCTTCGTGCGATCATTCGGTGGGTCA TGCCCGCTTTCACCAATTGACTGCACGTACCGCCTCCTTGTTGGTGCCTC CTGAAAGTATGCGAATCAACGGTTCAACTTCAAAGTCGTTCCTTGGTAGA GTTCGTCTGTGACACCACGGAAAGCGTCGCAAAGTTTGCCCACGGATGCT AGGAAGGTACCTGGACAGAAAACTGAACTTTTTCAACGTGTATAGTCAAA ACAATAACACCATCAACGCCTTCACACCACCACCAACAACAAGAACAAGA ACAACAACAACAACAACTTGTTGAGGTGAGGCTACGCCGAATAACGTCGC AATTTCACACGATATACGACTTCCTTCGTCGCACTGAAAATTCCTGACGG AGTTAGCTGACACCTGCCACCCCAAACGATCGATATCGATACCCCCCCAT GACCGTTGCTTGCGTGGCGCCTGTTGTTAACTGGCCGCTTCCCAGCCGTG TTCATGGCGATCCGGGTGCTATTGGGCTCTATCCTGGCGTTCAAGTACTT CTTCGTCATTTTCATGACCATATCGCACCCGCCCATCGTCTGGATTTTGT GAGTCCTACACCCCCCCCCCGTGTTTCGTGGTCGTTGCGAACCTGCGTGT GCTCTGGGATACGAACCCCCCTCCCTTCTGTGGTGGTGTCAACCCGGAGT TGTAGCTCTAGGTATTCTTCGGGGATTTGTTTTGTGGCTGTGCCCGGCCG CCTTCCCTGGTGTTAAGACAAGGAGGGCTATGTAGGCCCTGCTCACGATG CACGGGCCTACGCACGCGCTCGGTTGCTGGGCAACGCTGATGAGCTATGA AATATTACGGTGTCCTGCTAGAAGAATTCATGTCAGTCTCTGGAAAATAC AGAGCGCGCACACGTCTACTGTGTGACCGGCCGTCGTCGCAATTTCCGTC ATGCCGTCAACCACCGTCCTTTGACAAGGGTGTGTCTGAGCAGCGACGTG CACATCTGCCTCCTCCTCCTTCGTTGTGGGCTTGCGCAGGAACATCAGAC CCATCCAAGAGGTCCTGCATCACGCCCCAAGAAATAGCATTCCCAAAGGT GTCCAGATGCTGCTGGCGTTATCGTCGAGGAGGAGGCGGGGGAGCAGTTC AACTATCGGCGGCGAGGGTGTTACCTCGGATGTTTCACAGAATCCGAGCC AACACAGCCGCGAGTCTTACGTCGATTCGAACCGGCTCGCCGGCATCATG AACTACCTCCCACTGCGGGAAGCGTTCGGAGAGTTCTGCCAGAAATCGCT CTGCAGCGAGGTTAGTCGATGTGTGGTGTGTGTACAAGCCGTCGAGTCAT TGGCTAAATACTCGTTGCTCACAATTTCTAGCTGCCCGGCCTCGCCTCTT CTTCTCCAACTTCAGACCTTCTAGAAAACGGGCCACGCAGAATAGTTCAT TCCTCTGCGGTGCGCGCGTTCATTTCCTTTAGCGAGACCGGTTATCCGTC CTTCCACCACGTCCACTCACGAACAAGTCGTCTCTGCTACAACTAATGCT GGCATGGAGCATGGATAGACACACAACCGGCCGTGCTCCGAGCACGTGTT CGTTCTGGCTCTCTCCGGTTGGGGTCGCAGCAAGCGTGGCAGTAGTGTTT TGGTTGGCGTACGAGGCGGCGTTCCGAAGGCATCGAGGTGGCTGGTGTCC GGCGCATGCACATCACACACGAGAGAGTGGCAAGGGCGTGTGCTGCAGAC ACTTGCAGCAGGGGGGCCTCTCCTTCCGAGTACTTTCTCGCTGCGGCGGG ACCTTCGGGCTGGGTAATACAACATTCAGTCTATCTCCCCGCTTCTCACC TCCCGCTACTGTAAACAGGAGAATCATGGGCTGCTTGTTACGCCCCCCTG TATATTCGCCTTTTTGCCATCTGCCCTTCGATGGCCTTTTGATATCGATC GGTTTTCTGATCACATCATGCTTGCACATCTGTGTGCACCATCTCATTCG CAGTCTTTCCAGTTTCTCCTGGATGCTTCGGAGTTCAGAGGCGTGATCGT CGAAGGCCTCGTCGACGGCGATGCCAACGGCAGCGCCGAAGAGGAGAACG AGGCACCAACACACACCAGCGGGTTGGGGGACGTGGCCGCTATCGTGAAC GAGTACATCAAGGACGGTGCTCCCTCGGAGATCAACATCGGCAGCGACAC CAAGCACGACATCATGGAGCTGGCCAAGGTCGAAGCCTTCGCCTCGCTTG ACCAGGTGAGAAGTATAGAGAAGGATAGAAGTTCGAAACTTTCGTTTCGC TTGACCATGTGAGAAGCAAAGAGAAGGAAGGAAGTTCGAAGCTTTCGCTT CTCTTGACCAGGTGAGAAGCAGAAAGAAAGGGGAAAGCCGAACTGGCGTG CCTGGAGGCACGGCTCCGGCGTGCTCGGGCTTTCCGTTTTGGTCTCTAAA GCACCGTCGGTGACATAGGACATCACACTCCGGGGATCGATTTTCAAACA TCGATGCATAACTCCACGACGACGAGGACACGTAATCAAAATATTGATAT TCCGAAAGCCCTCGACGAGCCGGCTCGAACACCGCCATTGTCGGCACCGC CATGCTTAGGCAAGTCACGGACTCCCCCTTCGTCCTCCATGACCGAAATG TAGTGTATTCCTCCTGGAAGTGTGGTGACGTGGTTTCCGATGGTCCGGCT TTTGTTAAAACAACTTTGAATAGGCTCACTCCGTCCACCTTCTTGGCTGA GTATCGTTCGTGCGCAGACCGGTTCCTCGGGGCTGGGAATCAGTGTGGAC TGGCTGACCTTGATCTGCCCTTCATTTTTGGTGGTCTCCTTCTCACGTAC GGTGACTTGACAAGTCGTATGGCCACTGGTTGGAGAAATCCAGGTAGTTA TAGATGGTCAAAGCTTGTCTTCCAGAGAAGCGATTGACACACGGACGGTA TCAAACCGTTCAGGTTCGGGCGAAGCATGCGATAGACATGAGAAACGAGA CAATTTCCACTTTGACGGGGCTTTCATTCTCTTTTTCACATGGAGTTGAG CTGAAACTCGGGTTTCACAGCATCTGTAATAATGTGTCGTGAACAGACTG TAGGGGAAGTCCCTTCGTCGTAGATGCGGCATTACCGTCGACTCTTCGAC ATCTCCAGAGGGCAAACAAGGAAGTATCTGCCGCTTCCTCCCCCTTATTC CTAGCGCCGCGACCAGTACGATCACCATGTTCGTACCCGGACAAAAACGG CCAATCGTGGTATTTCGTGCAGATACTGCGCGAAGCCGCCGATCACTTTT GTTGTTCTTCTTTCGTCCTTCCCGTGTACAGGATGCGCGACTGCTGATTT TTGTCAAGGCCGAGAGGGAGATCAGGAGGATCCTGGAAGATAATCTCATG GCCAGGTTCCTGGCGTCCGCACAGTACAAACGGGCGGTGGACGGTGACGG CCATGGACGCGTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9454:1965..5730+

>mRNA_Ecto-sp8_S_contig9454.30986.1 ID=mRNA_Ecto-sp8_S_contig9454.30986.1|Name=mRNA_Ecto-sp8_S_contig9454.30986.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9454:1965..5730+ (Ectocarpus species8 EcLAC_412)
ATGAAGAACCTGGGCCCGCTCTCGGCGTTCATCACTCTCGTGGCGGTGGT
ATGCCTCGGCCGCCAGTTGAAGCGGATCCACGACCTCAGCAACATGGGCC
GGGATATTCGCCTGGTTGGGATAATTTTACTGATATGTGTACCCGTGTTC
ATGGCGATCCGGGTGCTATTGGGCTCTATCCTGGCGTTCAAGTACTTCTT
CGTCATTTTCATGACCATATCGCACCCGCCCATCGTCTGGATTTTGAACA
TCAGACCCATCCAAGAGGTCCTGCATCACGCCCCAAGAAATAGCATTCCC
AAAGGTGTCCAGATGCTGCTGGCGTTATCGTCGAGGAGGAGGCGGGGGAG
CAGTTCAACTATCGGCGGCGAGGGTGTTACCTCGGATGTTTCACAGAATC
CGAGCCAACACAGCCGCGAGTCTTACGTCGATTCGAACCGGCTCGCCGGC
ATCATGAACTACCTCCCACTGCGGGAAGCGTTCGGAGAGTTCTGCCAGAA
ATCGCTCTGCAGCGAGTCTTTCCAGTTTCTCCTGGATGCTTCGGAGTTCA
GAGGCGTGATCGTCGAAGGCCTCGTCGACGGCGATGCCAACGGCAGCGCC
GAAGAGGAGAACGAGGCACCAACACACACCAGCGGGTTGGGGGACGTGGC
CGCTATCGTGAACGAGTACATCAAGGACGGTGCTCCCTCGGAGATCAACA
TCGGCAGCGACACCAAGCACGACATCATGGAGCTGGCCAAGGTCGAAGCC
TTCGCCTCGCTTGACCAGGATGCGCGACTGCTGATTTTTGTCAAGGCCGA
GAGGGAGATCAGGAGGATCCTGGAAGATAATCTCATGGCCAGGTTCCTGG
CGTCCGCACAGTACAAACGGGCGGTGGACGGTGACGGCCATGGACGCGTG
TAG
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