mRNA_Ecto-sp8_S_contig9453.30983.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9453.30983.1
Unique NamemRNA_Ecto-sp8_S_contig9453.30983.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9453.30983.1 vs. uniprot
Match: A0A6H5KRH1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRH1_9PHAE)

HSP 1 Score: 462 bits (1189), Expect = 1.250e-160
Identity = 238/265 (89.81%), Postives = 244/265 (92.08%), Query Frame = 1 
Query:  106 VLLHAEHITLPRRLLRLPPRSLLPSAGGSDAATFTLRLCGVSAESEGVLLARKELVKPLVGGYCDAELLFREQRSAASPSATSGVGFGVGATEQVSGPVAVCHIHRRRGVLWRDMLQSRIDPRAGFGEYIISQGLARLREEQWWAAADCNGLNPASAAVAAALRPXXXXXXXXTRRHRTGAASTGWGGDDSDQPFPALKRLLEDREIFVAAEGDAKRASRGLWDLPQRGEQGGGRDSAAAGRAKGLIDGVAGIARVLTGLFGRWR 900
            VLLHAEHITLPRRLLRLPPRSLLPSAGGSDAATFTLRLCGVSAESEGVLLAR ELVKPLVG YCDAELLFREQRSAASPSAT+GVGFGVGATEQVSGPVAVCHIHRRRGVLWRDMLQSRIDP+AGFGEY+ISQGLARLREEQWWAAAD NGL PA A V AA RP        T RHRTGAASTG GGDDS+QPFPALKRLLEDREI VAAEGDAKRASRGLWDLPQRG +GGGRDSAAAGRAK LI+GVAGIARVLTGLFGRWR
Sbjct:  146 VLLHAEHITLPRRLLRLPPRSLLPSAGGSDAATFTLRLCGVSAESEGVLLARNELVKPLVGFYCDAELLFREQRSAASPSATAGVGFGVGATEQVSGPVAVCHIHRRRGVLWRDMLQSRIDPKAGFGEYLISQGLARLREEQWWAAADRNGLTPAPAVVTAAARPTSAVSAQ-THRHRTGAASTGEGGDDSEQPFPALKRLLEDREILVAAEGDAKRASRGLWDLPQRGGEGGGRDSAAAGRAKSLIEGVAGIARVLTGLFGRWR 409
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9453.30983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRH1_9PHAE1.250e-16089.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9453contigEcto-sp8_S_contig9453:100..1544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size903
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_005150.1
Cds size903
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145303.1734288-CDS-Ecto-sp8_S_contig9453:99..4861681145303.1734288-CDS-Ecto-sp8_S_contig9453:99..486Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9453 100..486 +
1681145303.1880164-CDS-Ecto-sp8_S_contig9453:1028..15441681145303.1880164-CDS-Ecto-sp8_S_contig9453:1028..1544Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9453 1029..1544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9453.30983.1prot_Ecto-sp8_S_contig9453.30983.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9453 100..1544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9453.30983.1

>prot_Ecto-sp8_S_contig9453.30983.1 ID=prot_Ecto-sp8_S_contig9453.30983.1|Name=mRNA_Ecto-sp8_S_contig9453.30983.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=301bp
PPPPPPHPPPPPPPPPRLQYPACLASLTASTPFLKVLLHAEHITLPRRLL
RLPPRSLLPSAGGSDAATFTLRLCGVSAESEGVLLARKELVKPLVGGYCD
AELLFREQRSAASPSATSGVGFGVGATEQVSGPVAVCHIHRRRGVLWRDM
LQSRIDPRAGFGEYIISQGLARLREEQWWAAADCNGLNPASAAVAAALRP
PTSAASAQTRRHRTGAASTGWGGDDSDQPFPALKRLLEDREIFVAAEGDA
KRASRGLWDLPQRGEQGGGRDSAAAGRAKGLIDGVAGIARVLTGLFGRWR
*
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mRNA from alignment at Ecto-sp8_S_contig9453:100..1544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9453.30983.1 ID=mRNA_Ecto-sp8_S_contig9453.30983.1|Name=mRNA_Ecto-sp8_S_contig9453.30983.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1445bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9453:100..1544+ (Ectocarpus species8 EcLAC_412)
CCACCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCG
ACTTCAATACCCCGCTTGCCTGGCGTCCTTGACCGCTTCCACTCCCTTCC
TCAAAGTGCTGCTACACGCGGAGCACATCACGCTCCCCCGGCGCCTCCTC
CGCCTTCCGCCGCGGTCCCTTCTCCCGAGCGCCGGCGGCAGCGATGCTGC
CACCTTTACCCTAAGGCTTTGCGGGGTTTCGGCGGAAAGTGAAGGCGTTC
TGCTTGCACGAAAGGAGCTGGTGAAGCCTCTGGTGGGGGGTTACTGTGAT
GCCGAGCTTTTGTTTCGGGAGCAGAGGTCAGCGGCTTCTCCGAGCGCGAC
TTCTGGGGTGGGCTTCGGCGTCGGAGCGACCGAACAGGTGACTGGAGAGA
CAAACCCTGTCCAATCGATACTGACGCCGGAAGTAGCAGACTGGTGGACG
TTTGGTGGGTATCAATGCACACCTTCAGAGCTGGCCACCCCTTTCCGCGG
TCAGCTTCTCACCCAGCCTTCGTGTCTAGTCTCTTGACCGTTTCACAGTC
AGAGCCCCGGCACTCTCGAATACATTTTGAGTTGGTTGTGTGTTTGCCCC
GATGAAAAATTCTGCTACCTTGTGTCTGTCGCATGCTGCCATGTTTGTTT
ACAAAAGAAGCCCGTTTAGGCTTTTGATACCCGTCCCAGCGCCTGAATTT
CTCTTGATACCATGCCCGGGAATCCCGATGCTTCAACTTTCGGAGATATT
ACCCGGTTGTTCGAGACCACCTCCTTGTGTTGGACCTGGAGACCTGGACT
TGGAAGACGAACGCATCGGCGCTCGTCCCAACCTCCCCCCGAGACCTGCC
GCGTGGACCAGAATGTTGTCCAGCACACACCCTGTGCCTTCAAAAATCGA
ACCCTTCCTTTTGCGATATTCGTGTGCAGGTTTCTGGGCCTGTAGCCGTA
TGTCACATCCACCGACGGAGGGGCGTGCTCTGGCGGGACATGCTACAGTC
TCGAATCGACCCCAGGGCGGGGTTCGGAGAGTACATTATTTCCCAGGGCC
TCGCGAGACTGCGCGAGGAACAGTGGTGGGCCGCGGCGGACTGCAACGGC
CTCAACCCTGCCTCGGCAGCAGTAGCAGCAGCATTAAGACCACCAACGTC
TGCCGCGAGCGCTCAAACGCGTCGCCATCGGACCGGCGCTGCAAGCACGG
GTTGGGGCGGGGACGATTCCGATCAGCCTTTCCCCGCACTCAAACGCCTC
CTGGAGGACCGCGAGATATTCGTTGCGGCTGAGGGAGACGCAAAGCGGGC
GAGTAGAGGGCTTTGGGATTTGCCGCAGCGTGGGGAACAGGGCGGCGGGA
GAGACAGCGCAGCGGCGGGCAGGGCGAAGGGTTTGATCGATGGGGTGGCG
GGCATTGCACGCGTATTAACGGGTTTGTTTGGCCGGTGGCGATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9453:100..1544+

>mRNA_Ecto-sp8_S_contig9453.30983.1 ID=mRNA_Ecto-sp8_S_contig9453.30983.1|Name=mRNA_Ecto-sp8_S_contig9453.30983.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9453:100..1544+ (Ectocarpus species8 EcLAC_412)
CCACCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCG
ACTTCAATACCCCGCTTGCCTGGCGTCCTTGACCGCTTCCACTCCCTTCC
TCAAAGTGCTGCTACACGCGGAGCACATCACGCTCCCCCGGCGCCTCCTC
CGCCTTCCGCCGCGGTCCCTTCTCCCGAGCGCCGGCGGCAGCGATGCTGC
CACCTTTACCCTAAGGCTTTGCGGGGTTTCGGCGGAAAGTGAAGGCGTTC
TGCTTGCACGAAAGGAGCTGGTGAAGCCTCTGGTGGGGGGTTACTGTGAT
GCCGAGCTTTTGTTTCGGGAGCAGAGGTCAGCGGCTTCTCCGAGCGCGAC
TTCTGGGGTGGGCTTCGGCGTCGGAGCGACCGAACAGGTTTCTGGGCCTG
TAGCCGTATGTCACATCCACCGACGGAGGGGCGTGCTCTGGCGGGACATG
CTACAGTCTCGAATCGACCCCAGGGCGGGGTTCGGAGAGTACATTATTTC
CCAGGGCCTCGCGAGACTGCGCGAGGAACAGTGGTGGGCCGCGGCGGACT
GCAACGGCCTCAACCCTGCCTCGGCAGCAGTAGCAGCAGCATTAAGACCA
CCAACGTCTGCCGCGAGCGCTCAAACGCGTCGCCATCGGACCGGCGCTGC
AAGCACGGGTTGGGGCGGGGACGATTCCGATCAGCCTTTCCCCGCACTCA
AACGCCTCCTGGAGGACCGCGAGATATTCGTTGCGGCTGAGGGAGACGCA
AAGCGGGCGAGTAGAGGGCTTTGGGATTTGCCGCAGCGTGGGGAACAGGG
CGGCGGGAGAGACAGCGCAGCGGCGGGCAGGGCGAAGGGTTTGATCGATG
GGGTGGCGGGCATTGCACGCGTATTAACGGGTTTGTTTGGCCGGTGGCGA
TGA
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