mRNA_Ecto-sp8_S_contig9452.30982.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9452.30982.1
Unique NamemRNA_Ecto-sp8_S_contig9452.30982.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9452.30982.1 vs. uniprot
Match: D8LI42_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI42_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 7.000e-53
Identity = 111/118 (94.07%), Postives = 112/118 (94.92%), Query Frame = 3 
Query:  183 MLGWINKKIATAGAGGGTXXXXXXGNERGGRASTDDSGKSQKRNDPQRDLPANPPRQQGQPGRRGSFFDAMGGAMTIGRGGGRGKKDDKSEAAALAEQLDAQRAERISCVAFKLVREI 536
            MLGWINKKIATAGAGG  XXXXXX NERG RASTD SGKSQKRNDPQRDLPANPP+QQGQPGRR SFFDAMGGAMTIGRGGGRGKKDDKSEAAALAEQLDAQRAERISCVAFKLVREI
Sbjct:    1 MLGWINKKIATAGAGGXXXXXXXXXNERGERASTDGSGKSQKRNDPQRDLPANPPQQQGQPGRRSSFFDAMGGAMTIGRGGGRGKKDDKSEAAALAEQLDAQRAERISCVAFKLVREI 118
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BLAST of mRNA_Ecto-sp8_S_contig9452.30982.1 vs. uniprot
Match: A0A6H5KQH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH9_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 5.840e-47
Identity = 103/118 (87.29%), Postives = 107/118 (90.68%), Query Frame = 3 
Query:  183 MLGWINKKIATAGAGGGTXXXXXXGNERGGRASTDDSGKSQKRNDPQRDLPANPPRQQGQPGRRGSFFDAMGGAMTIGRGGGRGKKDDKSEAAALAEQLDAQRAERISCVAFKLVREI 536
            MLGWINKKIATAG+G   XXXXXX NERG  ASTD SGKSQK +DPQR  PANPP+Q+GQPGRRGSFFDAMGGAMTIGR GGRGKKDDKSEAAALAEQLDAQRAERISCVAFKLVREI
Sbjct:    1 MLGWINKKIATAGSGXXXXXXXXXXNERGXGASTDGSGKSQKHHDPQRGPPANPPQQRGQPGRRGSFFDAMGGAMTIGRSGGRGKKDDKSEAAALAEQLDAQRAERISCVAFKLVREI 118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9452.30982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI42_ECTSI7.000e-5394.07Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQH9_9PHAE5.840e-4787.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9452contigEcto-sp8_S_contig9452:6218..7229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score193.4
Seed ortholog evalue6.2e-47
Seed eggNOG ortholog2880.D8LI42
Model size537
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2E8XM@1,2SFC4@2759
Cds size354
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145303.0993676-UTR-Ecto-sp8_S_contig9452:6217..62871681145303.0993676-UTR-Ecto-sp8_S_contig9452:6217..6287Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9452 6218..6287 +
1681145303.1144474-UTR-Ecto-sp8_S_contig9452:6763..68751681145303.1144474-UTR-Ecto-sp8_S_contig9452:6763..6875Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9452 6764..6875 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145303.126877-CDS-Ecto-sp8_S_contig9452:6875..72291681145303.126877-CDS-Ecto-sp8_S_contig9452:6875..7229Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9452 6876..7229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9452.30982.1prot_Ecto-sp8_S_contig9452.30982.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9452 6876..7229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9452.30982.1

>prot_Ecto-sp8_S_contig9452.30982.1 ID=prot_Ecto-sp8_S_contig9452.30982.1|Name=mRNA_Ecto-sp8_S_contig9452.30982.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=118bp
MLGWINKKIATAGAGGGTGSGQGGGNERGGRASTDDSGKSQKRNDPQRDL
PANPPRQQGQPGRRGSFFDAMGGAMTIGRGGGRGKKDDKSEAAALAEQLD
AQRAERISCVAFKLVREI
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mRNA from alignment at Ecto-sp8_S_contig9452:6218..7229+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9452.30982.1 ID=mRNA_Ecto-sp8_S_contig9452.30982.1|Name=mRNA_Ecto-sp8_S_contig9452.30982.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1012bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9452:6218..7229+ (Ectocarpus species8 EcLAC_412)
GCTTTGCCTCCCTCTCGCGTAGCACGCACAATCCAGAGCTACAGGTGGAC
TCATCCGCCTAGGAAGACAGGTACAAACTTGGGGAGACGGTATCGTTCCG
CGTCTCTCGCGCTCGCTCTGATGGTTGCCATGAAGAGTTTTTCTTCTCCC
AGTTGCGGTCCTTCTAACATCTACGGTGCCTGCCAACCTACAGAGCGAGA
CCGGCAACGGGCCGGTATTTTTTAGCATACAGTATCAGAAGGCATCGCCC
CCCCCCCTTTGCCTGCTTTTGGCAGGAGCACGAGCCGCTCGCCTGTCCTG
CAGCAAACCTTCTTTGGTAACCCTTGTTCGCCACAGCCGTATAAGCACGT
GCGTTGCATCATCAATCTTTGGTGCGAAATGTTCCTGCTTTAGCCCGTAA
ATGTATGTGAGAAGAGGTCGCTGCTGTATCTCTATCTTCAGCAGATACCA
TACTGCTGTATATAGCACGGCGTGCATGCCGAGATATTAAGAGCACGGTC
CCCTCGCCCGCAACGAACGCCGTCCCCCCCTTTCCGCTCTGAGCAGCAAA
TAGCTTCAGATGGGAAACAAGAGTCGGAACGCCTCTTGTGTTTTCCGTCG
GACGAGGCTGGCTGTTCCGCATCAACAGCTAATAGCGTAAACGAGAGAGA
ACAACAGCATGCTCGGGTGGATCAACAAGAAGATTGCGACAGCGGGTGCC
GGCGGCGGCACCGGGTCTGGACAAGGCGGCGGGAACGAACGAGGAGGAAG
AGCATCGACCGACGACTCAGGAAAATCCCAGAAGCGCAATGATCCGCAAC
GAGATCTGCCGGCCAACCCACCGCGGCAGCAGGGGCAACCGGGCCGCCGA
GGCTCTTTCTTCGACGCGATGGGCGGGGCCATGACAATAGGGAGGGGCGG
CGGCCGCGGCAAGAAGGACGACAAGAGCGAGGCCGCCGCGCTCGCCGAGC
AGCTGGACGCGCAGCGAGCGGAGCGCATCTCTTGTGTGGCGTTCAAGCTG
GTGCGCGAGATC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9452:6218..7229+

>mRNA_Ecto-sp8_S_contig9452.30982.1 ID=mRNA_Ecto-sp8_S_contig9452.30982.1|Name=mRNA_Ecto-sp8_S_contig9452.30982.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9452:6218..7229+ (Ectocarpus species8 EcLAC_412)
ATGCTCGGGTGGATCAACAAGAAGATTGCGACAGCGGGTGCCGGCGGCGG
CACCGGGTCTGGACAAGGCGGCGGGAACGAACGAGGAGGAAGAGCATCGA
CCGACGACTCAGGAAAATCCCAGAAGCGCAATGATCCGCAACGAGATCTG
CCGGCCAACCCACCGCGGCAGCAGGGGCAACCGGGCCGCCGAGGCTCTTT
CTTCGACGCGATGGGCGGGGCCATGACAATAGGGAGGGGCGGCGGCCGCG
GCAAGAAGGACGACAAGAGCGAGGCCGCCGCGCTCGCCGAGCAGCTGGAC
GCGCAGCGAGCGGAGCGCATCTCTTGTGTGGCGTTCAAGCTGGTGCGCGA
GATC
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