mRNA_Ecto-sp8_S_contig94514.30980.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig94514.30980.1
Unique NamemRNA_Ecto-sp8_S_contig94514.30980.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig94514.30980.1 vs. uniprot
Match: D8LIN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIN1_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.470e-25
Identity = 48/51 (94.12%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 ADSASDVSFEECVKLAQELKEVSRLPVACRQYLDKKAVLHQACEGMTGDQV 153
            ADSASDVSFEECVKLA+ELKEVSRLPV+CRQYLDKKAVLHQACEGMTGDQ+
Sbjct:   20 ADSASDVSFEECVKLAKELKEVSRLPVSCRQYLDKKAVLHQACEGMTGDQL 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94514.30980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIN1_ECTSI1.470e-2594.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94514contigEcto-sp8_S_contig94514:428..586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145302.9739196-CDS-Ecto-sp8_S_contig94514:427..5861681145302.9739196-CDS-Ecto-sp8_S_contig94514:427..586Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94514 428..586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94514.30980.1prot_Ecto-sp8_S_contig94514.30980.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig94514 428..586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig94514.30980.1

>prot_Ecto-sp8_S_contig94514.30980.1 ID=prot_Ecto-sp8_S_contig94514.30980.1|Name=mRNA_Ecto-sp8_S_contig94514.30980.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=53bp
ADSASDVSFEECVKLAQELKEVSRLPVACRQYLDKKAVLHQACEGMTGDQ
VRQ
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mRNA from alignment at Ecto-sp8_S_contig94514:428..586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig94514.30980.1 ID=mRNA_Ecto-sp8_S_contig94514.30980.1|Name=mRNA_Ecto-sp8_S_contig94514.30980.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94514:428..586+ (Ectocarpus species8 EcLAC_412)
GCCGACAGCGCGAGCGACGTGTCGTTCGAGGAGTGCGTGAAGCTTGCCCA
GGAGTTGAAAGAGGTCTCGCGGCTGCCCGTTGCCTGCCGCCAGTACCTGG
ACAAGAAGGCGGTCCTCCACCAGGCTTGCGAGGGGATGACGGGGGACCAG
GTGAGGCAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig94514:428..586+

>mRNA_Ecto-sp8_S_contig94514.30980.1 ID=mRNA_Ecto-sp8_S_contig94514.30980.1|Name=mRNA_Ecto-sp8_S_contig94514.30980.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94514:428..586+ (Ectocarpus species8 EcLAC_412)
GCCGACAGCGCGAGCGACGTGTCGTTCGAGGAGTGCGTGAAGCTTGCCCA
GGAGTTGAAAGAGGTCTCGCGGCTGCCCGTTGCCTGCCGCCAGTACCTGG
ACAAGAAGGCGGTCCTCCACCAGGCTTGCGAGGGGATGACGGGGGACCAG
GTGAGGCAG
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