mRNA_Ecto-sp8_S_contig945.30976.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig945.30976.1
Unique NamemRNA_Ecto-sp8_S_contig945.30976.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig945.30976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig945contigEcto-sp8_S_contig945:4846..7697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1119
Hectar predicted targeting categoryother localisation
Exons3
Cds size222
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145302.4674575-UTR-Ecto-sp8_S_contig945:4845..48931681145302.4674575-UTR-Ecto-sp8_S_contig945:4845..4893Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig945 4846..4893 -
1681145302.4997027-UTR-Ecto-sp8_S_contig945:5115..57001681145302.4997027-UTR-Ecto-sp8_S_contig945:5115..5700Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig945 5116..5700 -
1681145302.510518-UTR-Ecto-sp8_S_contig945:7095..72091681145302.510518-UTR-Ecto-sp8_S_contig945:7095..7209Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig945 7096..7209 -
1681145302.5206165-UTR-Ecto-sp8_S_contig945:7547..76971681145302.5206165-UTR-Ecto-sp8_S_contig945:7547..7697Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig945 7548..7697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145302.481287-CDS-Ecto-sp8_S_contig945:4893..51151681145302.481287-CDS-Ecto-sp8_S_contig945:4893..5115Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig945 4894..5115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig945.30976.1prot_Ecto-sp8_S_contig945.30976.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig945 4894..5115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig945.30976.1

>prot_Ecto-sp8_S_contig945.30976.1 ID=prot_Ecto-sp8_S_contig945.30976.1|Name=mRNA_Ecto-sp8_S_contig945.30976.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=74bp
MFCAYLACRIGPGRMPRREEKARERTYPQVIMAYQAVRKYLVWVWGFGLD
GHLIFVLVVEHDMLSAGEGLVLV*
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mRNA from alignment at Ecto-sp8_S_contig945:4846..7697-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig945.30976.1 ID=mRNA_Ecto-sp8_S_contig945.30976.1|Name=mRNA_Ecto-sp8_S_contig945.30976.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2852bp|location=Sequence derived from alignment at Ecto-sp8_S_contig945:4846..7697- (Ectocarpus species8 EcLAC_412)
CCTCACACAAACCTCGACGTGACACCAAAGTACACGCGCACCTCAAGCAG
GTCATACCCTCCATCGGAAACTGCGTCTACTGTATGTACCGTAACGGATC
TAAACGGCGCTGGCCTAAGAAACAGGGTGAACCAAACCTGACAAAAAATG
GTGTGTGTGCGTCTTTACATGTGGGCAACGCATAGAAGACGATGTGCACG
ATTTGGGATCAGCACTACAGCGAGAGTTGTAGCAGAATGACCAAAAGTCC
CTCGCGGAAAGACTGCTTCCGAATCTGGACGTGATTCCACGATCGTAATA
AAGCAAATAAGTTGTTACTGCTTTTCTGGGGAATGCGATGGCAATAATAC
ACAATAATAGCGTCAATTGCAGCAGCACCACCACCACCACCACCACCACC
ACCATCACCACTATCACCACCAGGCAGCGCCAAAACCATCACCACCAACA
CAAACAAGGATGCCACAATCTCTCTATTTCCATGCCAGAACTTTTGGGCA
TGAGCACGGGGGTCACGACCACAGCCAGCCACGGACACGGCTCCCACGCT
CACGACGATCACGGCGAGGAGGAAGGGCTGGTGCCCCCGGCGAAGCTTGG
AGGTGACCGTTTTTTTGTCTTGTTGATCGGCTGCTGATGTGTCAGGGTAT
TGGACTGGACGGGTGATGTGGTTGGTCGTGTGGGGATGGGCCACGTCGCC
GTGCCACACGAACGCCCTGGGCCCCACAACATCGGTTACAGTAACCTGTG
CCGAAAGAAATGATGCGATCGACGGCTGTACATGCTCCTGCCTACACCCA
GAACAGCAAGCACCGGCGAGCGAGCCTTTCTCGTAAACAACGACAGAGTC
AACAGCAGCAGCAGTAGCACTAACAGCGGCTCGGGAGACGTGGGCCCACA
GTTAGATGTAATGGAGCAACTATTAGTGTATGAGCATCTGTTCCTCCATA
ACATAGACATTAGCAGCAGCAGCACCGGTGCTTCCAGCATGGCGGGGGGC
CAGGACATGTATACGGGAGTCGGCAGGGGGGGACGGCGGGTCGGCGGCGG
CAGTCGGCGGGGTGGGGACTGGAGGAGTGGACCGTTTCCGGACGTTAGAG
CGGGGGTGGAGGAGGAAGTGGGGAGTGAGGTTGTGGTGAAGCTGAAGAAG
GAGAAGAACATCAACATGAAGAAGGCAGCCGTGTTGCGCGCGGTTACGGA
CTTGGTGGTAGTTGTTGCTGTTCAACCTCGGTGGCGACACGGAGGAACAG
AGGAAGGCAGAGAGGGAGAGAGAGATTTCCCTTCCCCCTCGAAAGCAGAG
TCGAACGAACGTCTATGAGTTTTTGATGTGGTGTCCCGCGTGAACAGACG
GTTTGATTGTTTGCTGTATCACCAGAAGAAAATCTGGCTTCGATTCTCCG
AAAATCTAAAGCAAAAGAGTTGAGTCTCGGCCATGAACGCGGTATCACGT
TGTCTGCGACGACCAGTTTTATGTAGTTGAGTTTGTCGCAGATTCCTCGG
GGGGGGGATGGGGCTGTGTGGACTGGGGGGCTACATGCGTGTACATGAGA
GACAGTCGTCTCTACATACTGTACGTCGGTAGCAGCGGGAAGGATTGATG
GAGGGTTCCAAATCCCAAATCCGCACCCCTGGAGTTATACGAGAAACATT
TTTCGTGACAATCTTCATTACATGAGGTGTGCACTCATTGGTTTTTGAAG
CGACCTACTGTAGCGACGGCATGCAAATGGTTTGCGACGATAGCCTTTGA
TTCACCAGACATATGTACTCAACGATTATTGGCGTCAGTAGCGTACTCGG
GCAATCTGACCTTGTTGATCAAGCCACCCCATTGACTTGACAAGCTCACC
CTTCAGAACTTTCCTCTTTCGCCTCTCAGTATATGTGACGAGCTCACCTT
ACGGACATTCCTCGTTTTTGTTCTCGGTATATATGACGAGCTCACCCTCT
AGAACTTTCCCTATTTTTTGCTCTCGGTGATCAACTTGTTCGTGCAGCCC
CGCGCCCACGAATCTTGTCGACGGCGCCATTGGTTCTCTTCAGGTGATGG
AGAGGAGGGAGCCTTCGTATTATAGTGGGTGTTTGTTGACGACGAATGTT
ACGTGCGCGTGTTTTGCGAGAGTGTGTTACTTGCCCCCCCGGCCCGCGAA
AAACCGGCATATCGCTCCGTTCTGGCATTGTCAGGATGCGAGGGCATTGG
TCGAACAACTACGGCATGCGTTGACTTGAGTACACTACCCCCGGTGCGGT
CCTGTCGTGCGGGATGCAAAGTGTTCGCGTCGAAAGCAGTCACCGGGCTG
TAGAGCAGAAGGAAGCGTAGCGTGGTGTGCCAACAGTTCCCGTTACCTCA
GCATGTCGCAAAGGGGAAGGCAAAGAAAGGCCCACGCAAGGGTCGTTTTT
CTCTGACAATGTGGTGTTGTTGTTGTTGTTCCAGAAATGTTGACTTGTGT
TGATTTGTTAGAGACAAAGGGAGCGAGCTTCGCGCTTCGCTCCTCCCCCC
CCCGCCTCTCCGTGGTGTGCGGTTGTGGGTTGTTGTCGGTTTTTATCCCC
GGGGCTGGTGTTGGCGTTTTAGGGATTGTGAAATGTTTTGTGCATATCTT
GCTTGTCGAATCGGACCGGGTCGTATGCCGAGGAGAGAAGAAAAGGCTAG
GGAGCGTACCTACCCGCAGGTAATCATGGCATATCAGGCCGTTCGGAAGT
ATCTCGTTTGGGTGTGGGGTTTTGGCCTTGACGGGCACCTGATTTTCGTA
CTCGTCGTGGAGCACGACATGTTGTCTGCTGGGGAAGGTTTAGTACTGGT
TTAGTACGTTTCCTGTGCGGTACAACGTTCCTGTCTGAGGCGACGAAGTC
TT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig945:4846..7697-

>mRNA_Ecto-sp8_S_contig945.30976.1 ID=mRNA_Ecto-sp8_S_contig945.30976.1|Name=mRNA_Ecto-sp8_S_contig945.30976.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp8_S_contig945:4846..7697- (Ectocarpus species8 EcLAC_412)
ATGTTTTGTGCATATCTTGCTTGTCGAATCGGACCGGGTCGTATGCCGAG
GAGAGAAGAAAAGGCTAGGGAGCGTACCTACCCGCAGGTAATCATGGCAT
ATCAGGCCGTTCGGAAGTATCTCGTTTGGGTGTGGGGTTTTGGCCTTGAC
GGGCACCTGATTTTCGTACTCGTCGTGGAGCACGACATGTTGTCTGCTGG
GGAAGGTTTAGTACTGGTTTAG
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