mRNA_Ecto-sp8_S_contig942.30937.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig942.30937.1
Unique NamemRNA_Ecto-sp8_S_contig942.30937.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig942.30937.1 vs. uniprot
Match: D8LNE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE6_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 7.300e-36
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 QLHKTEIASSEVQQTYQETNLHLFAENGNLAEVQRCLADGEMVDKRNTRRQTALHSACLGGHHEVADI 204
            QLHKTEIASSEVQQTYQETNLHLFAENGNLAEVQRCLADGEMVDKRNTRRQTALHSACLGGHHEVADI
Sbjct:    5 QLHKTEIASSEVQQTYQETNLHLFAENGNLAEVQRCLADGEMVDKRNTRRQTALHSACLGGHHEVADI 72
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BLAST of mRNA_Ecto-sp8_S_contig942.30937.1 vs. uniprot
Match: A0A836C7D2_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7D2_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.650e-10
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:   22 ASSEVQQTYQETNLHLFAENGNLAEVQRCLAD-GEMVDKRNTRRQTALHSACLGGHHEVADI 204
            A S V +++QETN+HLF E G+LAEV++ + + GE+VDKR+TR QT LH AC GGH +   +
Sbjct:   12 AQSTVARSFQETNVHLFCEQGDLAEVRKAIEEKGEIVDKRDTRLQTPLHCACTGGHAQAMQV 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig942.30937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNE6_ECTSI7.300e-36100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C7D2_9STRA5.650e-1053.23Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig942contigEcto-sp8_S_contig942:11805..16715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1286
Exons7
Cds size786
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig942.30937.1prot_Ecto-sp8_S_contig942.30937.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig942 12293..14440 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145299.5674155-UTR-Ecto-sp8_S_contig942:11804..118861681145299.5674155-UTR-Ecto-sp8_S_contig942:11804..11886Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig942 11805..11886 +
1681145299.5787663-UTR-Ecto-sp8_S_contig942:12187..122921681145299.5787663-UTR-Ecto-sp8_S_contig942:12187..12292Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig942 12188..12292 +
1681145299.6390402-UTR-Ecto-sp8_S_contig942:14440..144481681145299.6390402-UTR-Ecto-sp8_S_contig942:14440..14448Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig942 14441..14448 +
1681145299.656155-UTR-Ecto-sp8_S_contig942:15351..154521681145299.656155-UTR-Ecto-sp8_S_contig942:15351..15452Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig942 15352..15452 +
1681145299.6683064-UTR-Ecto-sp8_S_contig942:16029..161251681145299.6683064-UTR-Ecto-sp8_S_contig942:16029..16125Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig942 16030..16125 +
1681145299.683868-UTR-Ecto-sp8_S_contig942:16607..167151681145299.683868-UTR-Ecto-sp8_S_contig942:16607..16715Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig942 16608..16715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145299.5954008-CDS-Ecto-sp8_S_contig942:12292..128971681145299.5954008-CDS-Ecto-sp8_S_contig942:12292..12897Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig942 12293..12897 +
1681145299.606417-CDS-Ecto-sp8_S_contig942:13308..134261681145299.606417-CDS-Ecto-sp8_S_contig942:13308..13426Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig942 13309..13426 +
1681145299.6235685-CDS-Ecto-sp8_S_contig942:14377..144401681145299.6235685-CDS-Ecto-sp8_S_contig942:14377..14440Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig942 14378..14440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig942.30937.1

>prot_Ecto-sp8_S_contig942.30937.1 ID=prot_Ecto-sp8_S_contig942.30937.1|Name=mRNA_Ecto-sp8_S_contig942.30937.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=262bp
MKLPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXIIVLRMSDASVTSAGVLQGCGYYRQGRPASFHFALRSI
RRKRRYCAHSFGIGSRGQRTGRPLQHTTPRSMHARPHFCHQAFGGSRRRH
CGCGLQKAVTG*
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mRNA from alignment at Ecto-sp8_S_contig942:11805..16715+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig942.30937.1 ID=mRNA_Ecto-sp8_S_contig942.30937.1|Name=mRNA_Ecto-sp8_S_contig942.30937.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4911bp|location=Sequence derived from alignment at Ecto-sp8_S_contig942:11805..16715+ (Ectocarpus species8 EcLAC_412)
CAGCTCCACAAGACAGAAATTGCCAGTTCCGAGGTTCAACAAACCTACCA
GGAGACCAACCTCCATCTCTTCGCGGAGAACGGTGAGTGCGGTGCTTGAT
TGGCCCTGGATCAAGTCTTGAGGCCACTTCAGAACCTTCAGACTACAGCC
AATTTGTATGCAGGGGAAGATCCTCGCCGTGGCCTAGATTGTGTGCATCG
AAGACTAGACTAGACTACACCGCGCAGGAATACTATGACTACTGCAGTGA
GCTCAAGCTTCACCTTTGTCGACCCAAAGAAGAATAGACAACTATGCTGG
CTGGCAGCCTGAGCGGTAGTATTGAGTATCACGCAGAAACTGCGGCATGG
TGGATAAAAGTCGCGTATGCTGGGCTATAATAGGCAATCTGGCGGAGGTA
CAACGCTGCCTCGCCGACGGGGAGATGGTGGACAAGAGGAACACGAGGCG
GCAAACGGCGCTACACAGTGCCTGCCTCGGGGGCCACCATGAAGTTGCCG
ACATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTATTATCGTTCTTCGCATGTCCGACGC
ATCGGTTACGTCTGCGGGCGTTCTTCAGGGGTGCGGATACTACCGCCAAG
GACGACCAGCTAGTTTCCATTTTGCATTGCGCAGCATCCGGAGGTGCGTG
CTACCTTGCCCAGGACCACGGCAAGAGGATACAACATAGACCACAATGAC
GTGTCGGAAAGCGCATGGTTAGAATGTGCTGCGCTGTATGCTTCTTCCAT
TTGCGGTTATCGCAGATATTCAGCCAGAGCCACGCTTCGAGAAGCCGAAG
GCAAGCTTTGCACGCGAACTTGTCCATCTAGGACTATTTTGAACTGGTTG
CTATGTTGGAGGTGTTGATAACGCAACCCTTGTACGTGGCGTGTGGTACG
TTTGTCAAACATTACAGGGGCATTGTTAGGGGTTGCACAGAAAAATAGAT
CTACCTACCAAAACTCAGAAGGTTACGTCGGTAAATGTATTTGTCCCATT
CCCACGTGCGTCCGTCGTATCGAACATATACGATGGCAATCACCACACGT
CCAGGAAACGACGATATTGTGCGCACTCTTTTGGCATCGGGAGTCGTGGT
CAACGCACGGGACGACCGCTCCAGCACACCACTCCACGCAGCATGCATGC
GCGGCCACATTTCTGTCATCAGGTAATATGTTGGAGCGATAGGGAGAAAT
ACACAAGGCCCTACCTCAAGAGCTTCTTGTATTCCCAGTACTCATTCTTT
CTTCCACCGTTGGAATAACCCAACATGAACCTCATAGGTTTGTAGGGTGG
GATTCTCATCTGAATCACTGTTCTTGGGGTCACATTCTTAAGCATGGATG
ATGTTTAGCCCGGCGTTCTTTACACCCAGGTTATTCAGTGACTGTCCCTC
GCCCCACGCAATCCGGGCATCACTGCAACAACAAGAGGATATTGTTTGTA
TCCCAATTCGAGCATGCGCGTGAGCATATGTAGTGCTGGAAGTGACCCTT
GGAGGAACGAGAGAGATACTCCATGTCTGGAGGGGTGCTTGGTGAACATG
GTCGATGACTCAACCACCGATTCGTGACAAATGAGTGCGCGGCCGTGACT
CTCTCCCGCATCGCACTGCTGTGCCCCTGGGAAACGCCTAAATACGTATT
TTTCGTCCGTCTCACGCGGGCACCTACAATGAGGTTCATCATTCGTCCCC
GACAGGTCCAAGCCGATGACGGATCGGACTTTGCCGCGTTGCCTGGTGTT
CTTTTGGTGATATATACCGTGTTTTTAGTCGAGAACACGGTGGCCGAGTT
ACCTACGCCCGTGCAGGCTTGCGATCCATTCCCATTATGCATTCGCACCG
GGTCCATTTCGCAGTACGGTTATTGATACAGACTTGGCGATCCAGAGTGC
AATTTAAGCCCGTGATTTTCTGCAGGAAAGAGTGATTATCTCAACCGCAC
TTCGCCAAACAAAAAAATATCGGACTGCCTGAATAGTGGAGGTTGTCGAA
GCTCCCGATCCGCGATTCGCCAGACAAACTATTTTGTTTTGCTTGGGAAA
CGTTCAACGTAGGAGGCCGATCACGAAACATGATATTTGCCACCTCACGC
GGCGCGCACCCCTTCCGTTGTAGGCTTTTGGTGGAAGCCGGCGGAGACAC
TGTGGCTGTGGACTGCAAAAAGCGGTCACCGGGTGACGTTATCGGTAAAT
ATCGCAGTTGTGGCTGGCCCCTGAAGTCGGCGTTTCTCGAACCGTTGGTT
GTTTCTCAGTAGTTTGAAGTGGGGGCACTTGAACCAATCGGAGTCTGTGA
TGTGTTGAGGACCGGACAGCAAATGCGTGTAGCTTAGGCATTGCCACCTG
GGCTCTGTAACATGAATATGTTTACGGCGAGCATCTGCTTGTTTTGACAC
ATCAACCACATCTCGAGAGGAATGGGTTGGTTCGCCTCGAGCTTACTGCC
TAGATGTGAGGCAGATGTAAAGCTTCGACACTACACATTAGATTGATTGT
TTTCTACGAGTGGCCCCGAGAGCGAATGAGAACATGTGAAAAGGCTCCTC
GGGGTTATCGCGAGTAGGGGATGGAGTGTTTCAAAAGAACAATACGGCTG
TCGGAGAAAAGTCTCCGAGGGAGTTTGGTTCTGAAGAGCAATACTTGAAC
ACACCACGACGCACCGCGCCACTTCTTTTTTTGTAGCCTGGGATATTATG
GGTACTTGCCTCCCTGGGTGCCGATTGTACAGGAACACACACCCACAGCG
ACGTCAGAATTGCAACAAGTGGAAACTGAACCGAACATATAGGCAAGTAT
CTTTCTGTGGCAGGCGTGAGGGAATTGAAAAAACCACCGGGGAAAAAATG
TCTCAGTGGATCAGGCGGAGGAGATCTTGAAACCAAGACACTTCGCACTC
CGGGGTGGCCAGAAACTTTGGTAAAATCTCAGTTCATCGGGAGGGGAGGG
ACCAAAAGAGCTGATCGTGTTTGGTTCAGTGCGTTTCGAACATGCTTCGA
CCTGCCCGCACAATGAACTATAGACTTTGCCGCTTCTGTGGAGAGTTATT
ATATTTAATGGATTGAAGACGAAGCTCAATCTGGATTCCCGACACAGGTG
AAATGGGTTATGTGAAGCACGATCTTGCCAAGGCCATCAGAACCGTCTTG
AACTCCGCGTCTGGTGGTTTCCGAGAGCAAGCGGCCGACCTTAAGCGGGT
GAGCAACCCCACAGATGGGGCCGAACCGACATCTTCGTCTGCGATATTGT
TTGCAAACGAAAAATATCGTGGCTGATGTGCGAGTCGGTCGTGATTTTTT
CTTTTTGTGCCCTGGGCGGAACCTTCTTTCTTCTTGGCTGTTTGCTCAGT
CGTTTTTTCTGAAGGGAAAACTCGTCCCTCTCGAAGTGAGGATTCGAAAC
CTCATGCACCACCTCCAGCCTTAGCTCTTGCTTGTGTTCGTTTGCAACTA
CGCTGGTTGGTTGGGTCAGACCGTCGTTACAGAAGCAACCGGTCTGCGGC
ATTGTCCATCTGAGTCCATCGGAAATGGCATACCCGAAAGCCTCCCACGG
CTCGCCATCCCCGACCAGCGCTGGCTGAGTAGGTGACAGACAAACGTTTC
AACATCGAATTCTGTGGCGAGGGGGTTTTGGGTAGAGGAGTTACTGCACG
ACGCATCCTATCAAACCTAGGAGCCGGTAAAGCATGCTTCCGCCATCCCA
AGGTCTAAGGAAATTCCATCCCTTCCCACCACATTCCTCGTATGCCCTGT
ATCCTTTCACTCCGTACACTCCCAGGAGAAAGAATCGCTGAAAGTGGAGG
TAGAAACAATAACGAAGCGACTGCACGCAGTCGAGGGAGAACTGGAAAAC
GCTGATCAGGAAACCGCTCAGGTGCTCCAGTGTGTGGAAAATCAAAAACT
GTCTTGATCTGTGACGCATGTTTGGGGAGGCGGATGACGTCGTCTCCTGA
CATCTTGTCCATGTGAATTACTCCCTTCTAGCTTGTGGTACGCCGTGTCT
GAATCCCACCAATATTCATAGTGAAACCAAAACGTGTAGCTTGCACACCG
CCTCATGCTGGACGCATCCCGAAAATCACGGAATAAAACTGTTCCATGTT
TAACGAGGCGAAATTCGGTCGTGGTGCGTCGTAACCCTCATTTCGCTTAA
CTCTCAATTCGTTCAATGATGGTACCGAAATATGTTTTCCGCTGAACCCT
TGTGAACTAAATGCGCTGTGTAATGTTTCGATGTTCCACGTTGTGACCTG
CAACCACCATGTATAGTGCCTATGCTATTTACGATGGTGAATACTCCGGA
GTAGTGTTGACCTCCCCATACCAATCGTCGGTACTGTTCTGAACTTTCGT
CAGCTGAAAACTTTAGTCAAGAAGATGGAGGAAGAGGTTCGTCAGCTACG
GAGCGCTGCGAGCAAGGAGACTCAGAGGCGGAAGAAGAATAAGATCCCAT
GCACTATTTCT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig942:11805..16715+

>mRNA_Ecto-sp8_S_contig942.30937.1 ID=mRNA_Ecto-sp8_S_contig942.30937.1|Name=mRNA_Ecto-sp8_S_contig942.30937.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=786bp|location=Sequence derived from alignment at Ecto-sp8_S_contig942:11805..16715+ (Ectocarpus species8 EcLAC_412)
ATGAAGTTGCCGACATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTATCGTTCTTCG
CATGTCCGACGCATCGGTTACGTCTGCGGGCGTTCTTCAGGGGTGCGGAT
ACTACCGCCAAGGACGACCAGCTAGTTTCCATTTTGCATTGCGCAGCATC
CGGAGGAAACGACGATATTGTGCGCACTCTTTTGGCATCGGGAGTCGTGG
TCAACGCACGGGACGACCGCTCCAGCACACCACTCCACGCAGCATGCATG
CGCGGCCACATTTCTGTCATCAGGCTTTTGGTGGAAGCCGGCGGAGACAC
TGTGGCTGTGGACTGCAAAAAGCGGTCACCGGGTGA
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