mRNA_Ecto-sp8_S_contig94089.30920.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig94089.30920.1
Unique NamemRNA_Ecto-sp8_S_contig94089.30920.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig94089.30920.1 vs. uniprot
Match: A0A6H5JIQ4_9PHAE (Spindle pole body component n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ4_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.950e-22
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    1 QDFNTRYWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQ 126
            QDFNTRYWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQ
Sbjct:   90 QDFNTRYWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQ 131
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BLAST of mRNA_Ecto-sp8_S_contig94089.30920.1 vs. uniprot
Match: D8LBZ5_ECTSI (Spindle pole body component n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ5_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 7.630e-20
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    1 QDFNTRYWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQ 126
            QDFNTRYWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVR+
Sbjct:  854 QDFNTRYWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRE 895
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BLAST of mRNA_Ecto-sp8_S_contig94089.30920.1 vs. uniprot
Match: A0A7S2RS01_9STRA (Spindle pole body component (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RS01_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.080e-7
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    4 DFNTRYWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQ 126
            DF T YW  R+ L+  H+   LA  Q KILTTGKYLNVVR+
Sbjct:   23 DFTTTYWETRFTLQESHIPRFLAAHQHKILTTGKYLNVVRE 63
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BLAST of mRNA_Ecto-sp8_S_contig94089.30920.1 vs. uniprot
Match: A0A3P3Y4S6_PLABS (Spindle pole body component n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y4S6_PLABS)

HSP 1 Score: 52.8 bits (125), Expect = 7.950e-7
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 QDFNTRYWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQ 126
            +DFN  YW  RY++R EHV A L    +KIL TGKYLNV+RQ
Sbjct:  626 RDFNDSYWDERYVVRNEHVPAFLQQFSNKILLTGKYLNVLRQ 667
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BLAST of mRNA_Ecto-sp8_S_contig94089.30920.1 vs. uniprot
Match: A0A835ZJD2_9STRA (Spc98 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJD2_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.030e-6
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    4 DFNTRYWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQ 126
            DFN +YW GRY ++   V + L     KILTTGKYLNVVR+
Sbjct:  670 DFNAQYWEGRYTIQQPMVASFLQAHAHKILTTGKYLNVVRE 710
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BLAST of mRNA_Ecto-sp8_S_contig94089.30920.1 vs. uniprot
Match: G1SF00_RABIT (Gamma-tubulin complex component n=5 Tax=Lagomorpha TaxID=9975 RepID=G1SF00_RABIT)

HSP 1 Score: 51.6 bits (122), Expect = 2.040e-6
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 QDFNTRYWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQ 126
            +D+N RYW  RY + P+ + + L    DKIL+TGKYLNVVR+
Sbjct:  421 EDYNDRYWDQRYTIVPQQIPSFLQKMADKILSTGKYLNVVRE 462
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BLAST of mRNA_Ecto-sp8_S_contig94089.30920.1 vs. uniprot
Match: A0A5F9DS32_RABIT (Gamma-tubulin complex component n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=A0A5F9DS32_RABIT)

HSP 1 Score: 51.6 bits (122), Expect = 2.040e-6
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 QDFNTRYWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQ 126
            +D+N RYW  RY + P+ + + L    DKIL+TGKYLNVVR+
Sbjct:  421 EDYNDRYWDQRYTIVPQQIPSFLQKMADKILSTGKYLNVVRE 462
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BLAST of mRNA_Ecto-sp8_S_contig94089.30920.1 vs. uniprot
Match: W7U244_9STRA (Gamma-tubulin complex component 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U244_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 9.750e-6
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    1 QDFNTRYWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQ 126
            +DFN  YW  R  +  EHV + L   + +ILTTGKYLNV+R+
Sbjct:  664 EDFNAEYWDARSTICAEHVFSVLEEHKPRILTTGKYLNVIRE 705
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BLAST of mRNA_Ecto-sp8_S_contig94089.30920.1 vs. uniprot
Match: UPI001C4BA349 (gamma-tubulin complex component 2 isoform X1 n=2 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4BA349)

HSP 1 Score: 49.7 bits (117), Expect = 9.750e-6
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    1 QDFNTRYWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQ 126
            +D+N +YW  RY L PE + + L    DKIL+ GKYLNVVR+
Sbjct:  467 EDYNDKYWDQRYTLVPEQIPSFLQKVADKILSAGKYLNVVRE 508
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BLAST of mRNA_Ecto-sp8_S_contig94089.30920.1 vs. uniprot
Match: UPI00189F2556 (gamma-tubulin complex component 2 isoform X1 n=4 Tax=Xenarthra TaxID=9348 RepID=UPI00189F2556)

HSP 1 Score: 49.7 bits (117), Expect = 9.750e-6
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    1 QDFNTRYWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQ 126
            +D+N RYW  RY +  +H+ A L     KIL+TGKYLNVVR+
Sbjct:  440 EDYNDRYWDQRYTVVQQHIPAFLQKMAGKILSTGKYLNVVRE 481
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94089.30920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIQ4_9PHAE2.950e-22100.00Spindle pole body component n=1 Tax=Ectocarpus sp.... [more]
D8LBZ5_ECTSI7.630e-2097.62Spindle pole body component n=1 Tax=Ectocarpus sil... [more]
A0A7S2RS01_9STRA3.080e-758.54Spindle pole body component (Fragment) n=1 Tax=Rhi... [more]
A0A3P3Y4S6_PLABS7.950e-759.52Spindle pole body component n=2 Tax=Plasmodiophora... [more]
A0A835ZJD2_9STRA2.030e-656.10Spc98 family-domain-containing protein n=1 Tax=Tri... [more]
G1SF00_RABIT2.040e-652.38Gamma-tubulin complex component n=5 Tax=Lagomorpha... [more]
A0A5F9DS32_RABIT2.040e-652.38Gamma-tubulin complex component n=1 Tax=Oryctolagu... [more]
W7U244_9STRA9.750e-650.00Gamma-tubulin complex component 2 n=2 Tax=Monodops... [more]
UPI001C4BA3499.750e-652.38gamma-tubulin complex component 2 isoform X1 n=2 T... [more]
UPI00189F25569.750e-652.38gamma-tubulin complex component 2 isoform X1 n=4 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94089contigEcto-sp8_S_contig94089:466..591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score90.9
Seed ortholog evalue1.5e-16
Seed eggNOG ortholog2880.D8LBZ5
Model size126
KEGG koko:K16569
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000923,GO:0000928,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005816,GO:0005822,GO:0005824,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0008092,GO:0008150,GO:0008275,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0031109,GO:0031122,GO:0032153,GO:0032155,GO:0032991,GO:0034622,GO:0043015,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0046785,GO:0048285,GO:0051225,GO:0051258,GO:0051321,GO:0051415,GO:0051418,GO:0065003,GO:0070925,GO:0071840,GO:0090307,GO:0097435,GO:0140014,GO:1902850,GO:1903047
Exons1
EggNOG free text desc.microtubule nucleation by interphase microtubule organizing center
EggNOG OGsKOG2001@1,KOG2001@2759
Cds size126
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145298.4126523-CDS-Ecto-sp8_S_contig94089:465..5911681145298.4126523-CDS-Ecto-sp8_S_contig94089:465..591Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94089 466..591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94089.30920.1prot_Ecto-sp8_S_contig94089.30920.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig94089 466..591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig94089.30920.1

>prot_Ecto-sp8_S_contig94089.30920.1 ID=prot_Ecto-sp8_S_contig94089.30920.1|Name=mRNA_Ecto-sp8_S_contig94089.30920.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=42bp
QDFNTRYWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQ
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mRNA from alignment at Ecto-sp8_S_contig94089:466..591+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig94089.30920.1 ID=mRNA_Ecto-sp8_S_contig94089.30920.1|Name=mRNA_Ecto-sp8_S_contig94089.30920.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94089:466..591+ (Ectocarpus species8 EcLAC_412)
CAGGACTTCAACACACGCTACTGGTCCGGGCGTTACCTCCTGCGGCCGGA
GCACGTCATCGCCAACCTTGCCGGCCGACAGGACAAGATTCTCACCACCG
GAAAATACCTCAACGTCGTCAGGCAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig94089:466..591+

>mRNA_Ecto-sp8_S_contig94089.30920.1 ID=mRNA_Ecto-sp8_S_contig94089.30920.1|Name=mRNA_Ecto-sp8_S_contig94089.30920.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94089:466..591+ (Ectocarpus species8 EcLAC_412)
CAGGACTTCAACACACGCTACTGGTCCGGGCGTTACCTCCTGCGGCCGGA
GCACGTCATCGCCAACCTTGCCGGCCGACAGGACAAGATTCTCACCACCG
GAAAATACCTCAACGTCGTCAGGCAA
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