mRNA_Ecto-sp8_S_contig94043.30912.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig94043.30912.1
Unique NamemRNA_Ecto-sp8_S_contig94043.30912.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig94043.30912.1 vs. uniprot
Match: D7FSU2_ECTSI (Gill-specific calpain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSU2_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 4.930e-43
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = 1
Query:   16 QVWGSLIEKAFAKLHGCYESLGRGSIEQGLRCLTGTPLIRTPLTGLEPKSDWDGGVADKESEKRRQDLWAKMKKW 240
            QVWG LIEKAFAKLHGCYESLGRGSIEQGLRCLTGTPLIRTPLTGLEPKSDWDGGVADKESEKRRQ LWAKMKKW
Sbjct:  135 QVWGPLIEKAFAKLHGCYESLGRGSIEQGLRCLTGTPLIRTPLTGLEPKSDWDGGVADKESEKRRQHLWAKMKKW 209          
BLAST of mRNA_Ecto-sp8_S_contig94043.30912.1 vs. uniprot
Match: A0A7R9PZM3_9ACAR (Hypothetical protein n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9PZM3_9ACAR)

HSP 1 Score: 57.8 bits (138), Expect = 6.830e-8
Identity = 28/54 (51.85%), Postives = 33/54 (61.11%), Query Frame = 1
Query:   16 QVWGSLIEKAFAKLHGCYESLGRGSIEQGLRCLTGTPLIRTPLTGLEPKSDWDG 177
            Q+W  LIEKA AKLHGCYE+L  G   +GL  LTG P    PL    P S+ +G
Sbjct:  331 QLWVPLIEKALAKLHGCYEALVSGRAIEGLSTLTGAPCESIPLQSSTPSSNEEG 384          
BLAST of mRNA_Ecto-sp8_S_contig94043.30912.1 vs. uniprot
Match: A0A7R9QH69_9ACAR (Hypothetical protein n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9QH69_9ACAR)

HSP 1 Score: 57.8 bits (138), Expect = 6.940e-8
Identity = 28/54 (51.85%), Postives = 33/54 (61.11%), Query Frame = 1
Query:   16 QVWGSLIEKAFAKLHGCYESLGRGSIEQGLRCLTGTPLIRTPLTGLEPKSDWDG 177
            Q+W  LIEKA AKLHGCYE+L  G   +GL  LTG P    PL    P S+ +G
Sbjct:  863 QLWVPLIEKALAKLHGCYEALVSGRAIEGLSTLTGAPCESIPLQSSTPSSNEEG 916          
BLAST of mRNA_Ecto-sp8_S_contig94043.30912.1 vs. uniprot
Match: E0V998_PEDHC (Calpain D, putative n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0V998_PEDHC)

HSP 1 Score: 57.4 bits (137), Expect = 9.520e-8
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 1
Query:   16 QVWGSLIEKAFAKLHGCYESLGRGSIEQGLRCLTGTPLIRTPLTGLEPKSDWD 174
            Q+W  LIEKA AK+HGCYE+L  G   +GL  LTG P    PL    P S++D
Sbjct: 1142 QLWVPLIEKAVAKIHGCYEALVSGRAIEGLATLTGAPCESIPLQPSSPPSEYD 1194          
BLAST of mRNA_Ecto-sp8_S_contig94043.30912.1 vs. uniprot
Match: A0A7R8XC64_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8XC64_9CRUS)

HSP 1 Score: 57.0 bits (136), Expect = 1.260e-7
Identity = 30/69 (43.48%), Postives = 39/69 (56.52%), Query Frame = 1
Query:   16 QVWGSLIEKAFAKLHGCYESLGRGSIEQGLRCLTGTPL--------IRTPLTGLEPKSDWDGGVADKES 198
            Q+W  LIEKA AKLHGCYE+L  G++ +GL  LTG P          + P   LEP   W   V+ +E+
Sbjct:  159 QLWVPLIEKAMAKLHGCYEALASGNVIEGLAILTGAPCESLLLQPSSQAPEDALEPDLIWAQLVSSREA 227          
BLAST of mRNA_Ecto-sp8_S_contig94043.30912.1 vs. uniprot
Match: A0A2T7PMQ3_POMCA (Calpain catalytic domain-containing protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PMQ3_POMCA)

HSP 1 Score: 57.0 bits (136), Expect = 1.270e-7
Identity = 28/51 (54.90%), Postives = 32/51 (62.75%), Query Frame = 1
Query:   13 MQVWGSLIEKAFAKLHGCYESLGRGSIEQGLRCLTGTPLIRTPLTGLEPKS 165
            MQ+W  LIEKA AKLHGCYE+L  G   +GL  LTG P    PL   E K+
Sbjct:  208 MQLWVPLIEKAMAKLHGCYEALVSGKCIEGLATLTGAPCESIPLQADEQKA 258          
BLAST of mRNA_Ecto-sp8_S_contig94043.30912.1 vs. uniprot
Match: UPI000D736251 (calpain-15-like n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D736251)

HSP 1 Score: 57.0 bits (136), Expect = 1.290e-7
Identity = 28/51 (54.90%), Postives = 32/51 (62.75%), Query Frame = 1
Query:   13 MQVWGSLIEKAFAKLHGCYESLGRGSIEQGLRCLTGTPLIRTPLTGLEPKS 165
            MQ+W  LIEKA AKLHGCYE+L  G   +GL  LTG P    PL   E K+
Sbjct:  504 MQLWVPLIEKAMAKLHGCYEALVSGKCIEGLATLTGAPCESIPLQADEQKA 554          
BLAST of mRNA_Ecto-sp8_S_contig94043.30912.1 vs. uniprot
Match: A0A7S0J6V3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J6V3_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 2.970e-7
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 1
Query:   16 QVWGSLIEKAFAKLHGCYESLGRGSIEQGLRCLTGTPLIRTPLTGLEPKSDWDGGVAD 189
            Q+W  L+EKAFAKL+GCYE+L  G++ + L  LTG P  R  L      +   G  AD
Sbjct:    5 QLWVPLLEKAFAKLYGCYEALEGGTVGEALATLTGFPCERLTLQSRRSSAACRGSSAD 62          
BLAST of mRNA_Ecto-sp8_S_contig94043.30912.1 vs. uniprot
Match: A0A6B2L0T4_9EUKA (Calpain catalytic domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L0T4_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 4.380e-7
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 1
Query:    1 RPTEMQVWGSLIEKAFAKLHGCYESLGRGSIEQGLRCLTGTP 126
            R T  Q+W SL+EKA AKLHG YE++  GSIE GLR LTG P
Sbjct:  133 RSTHGQLWVSLVEKAHAKLHGSYEAVVSGSIEDGLRELTGVP 174          
BLAST of mRNA_Ecto-sp8_S_contig94043.30912.1 vs. uniprot
Match: A0A7S0TZU0_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TZU0_HEMAN)

HSP 1 Score: 55.1 bits (131), Expect = 5.910e-7
Identity = 31/80 (38.75%), Postives = 45/80 (56.25%), Query Frame = 1
Query:    4 PTEMQV-WGSLIEKAFAKLHGCYESLGRGSIEQGLRCLTGTPLIRTPLTGLEPKSDWDGGVADKESEKRRQDLWAKMKKW 240
            P++ +V W SL+EKA+AK HGCYE+L +G+I+ GL+ LTG      PL     KS    G            LW+++ +W
Sbjct:   14 PSKQRVMWVSLLEKAYAKAHGCYENLSKGTIQYGLKDLTGGAPQVLPLDDDSVKSKVVNGT-----------LWSQLLEW 82          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94043.30912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSU2_ECTSI4.930e-4397.33Gill-specific calpain n=1 Tax=Ectocarpus siliculos... [more]
A0A7R9PZM3_9ACAR6.830e-851.85Hypothetical protein n=1 Tax=Medioppia subpectinat... [more]
A0A7R9QH69_9ACAR6.940e-851.85Hypothetical protein n=1 Tax=Oppiella nova TaxID=3... [more]
E0V998_PEDHC9.520e-850.94Calpain D, putative n=1 Tax=Pediculus humanus subs... [more]
A0A7R8XC64_9CRUS1.260e-743.48Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
A0A2T7PMQ3_POMCA1.270e-754.90Calpain catalytic domain-containing protein n=1 Ta... [more]
UPI000D7362511.290e-754.90calpain-15-like n=1 Tax=Pomacea canaliculata TaxID... [more]
A0A7S0J6V3_9EUKA2.970e-744.83Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A6B2L0T4_9EUKA4.380e-764.29Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A7S0TZU0_HEMAN5.910e-738.75Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94043contigEcto-sp8_S_contig94043:43..282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score157.1
Seed ortholog evalue3.2e-36
Seed eggNOG ortholog2880.D7FSU2
Model size240
KEGG koko:K08574,ko:K08579
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
Cds size228
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145297.7354212-CDS-Ecto-sp8_S_contig94043:42..2701681145297.7354212-CDS-Ecto-sp8_S_contig94043:42..270Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94043 43..270 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145297.748126-UTR-Ecto-sp8_S_contig94043:270..2821681145297.748126-UTR-Ecto-sp8_S_contig94043:270..282Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig94043 271..282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94043.30912.1prot_Ecto-sp8_S_contig94043.30912.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig94043 43..270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig94043.30912.1

>prot_Ecto-sp8_S_contig94043.30912.1 ID=prot_Ecto-sp8_S_contig94043.30912.1|Name=mRNA_Ecto-sp8_S_contig94043.30912.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=76bp
MQVWGSLIEKAFAKLHGCYESLGRGSIEQGLRCLTGTPLIRTPLTGLEPK
SDWDGGVADKESEKRRQDLWAKMKKW
back to top

mRNA from alignment at Ecto-sp8_S_contig94043:43..282-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig94043.30912.1 ID=mRNA_Ecto-sp8_S_contig94043.30912.1|Name=mRNA_Ecto-sp8_S_contig94043.30912.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=240bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94043:43..282- (Ectocarpus species8 EcLAC_412)
CGTCCAACGGAGATGCAGGTGTGGGGTTCCCTCATCGAGAAAGCCTTCGC AAAGCTTCACGGTTGTTACGAGAGCTTGGGTCGCGGGTCGATCGAACAGG GCCTGCGCTGTCTTACGGGCACCCCCCTGATCAGGACTCCACTAACGGGC CTAGAGCCTAAGAGTGATTGGGACGGAGGTGTCGCCGACAAGGAGTCTGA GAAGCGTCGGCAGGATCTGTGGGCGAAGATGAAGAAGTGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig94043:43..282-

>mRNA_Ecto-sp8_S_contig94043.30912.1 ID=mRNA_Ecto-sp8_S_contig94043.30912.1|Name=mRNA_Ecto-sp8_S_contig94043.30912.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94043:43..282- (Ectocarpus species8 EcLAC_412)
ATGCAGGTGTGGGGTTCCCTCATCGAGAAAGCCTTCGCAAAGCTTCACGG
TTGTTACGAGAGCTTGGGTCGCGGGTCGATCGAACAGGGCCTGCGCTGTC
TTACGGGCACCCCCCTGATCAGGACTCCACTAACGGGCCTAGAGCCTAAG
AGTGATTGGGACGGAGGTGTCGCCGACAAGGAGTCTGAGAAGCGTCGGCA
GGATCTGTGGGCGAAGATGAAGAAGTGG
back to top