mRNA_Ecto-sp8_S_contig9404.30910.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9404.30910.1
Unique NamemRNA_Ecto-sp8_S_contig9404.30910.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9404.30910.1 vs. uniprot
Match: A0A6H5KVF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF3_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 4.660e-34
Identity = 64/86 (74.42%), Postives = 74/86 (86.05%), Query Frame = 2 
Query:    2 GRLHQIAMRDPTDKYDLPDHLSWQMNMAVDHNEVSRNAKGILGETFTPTRDANGKAIMAGMEAIRGQQEHYRVKGALGTDFIQDGH 259
            GRLHQIAMRDPTD++DLPDHL+WQMNMA+ H +VS  AKGILG+TF PTRDA+GK IM G+EAIRG +E YRV GALG DF+QD H
Sbjct:  527 GRLHQIAMRDPTDRFDLPDHLTWQMNMAIHHEDVSHAAKGILGQTFVPTRDADGKPIMTGLEAIRGSEEDYRVDGALGVDFVQDAH 612
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BLAST of mRNA_Ecto-sp8_S_contig9404.30910.1 vs. uniprot
Match: A0A6H5L5Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y7_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 6.810e-29
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 2 
Query:    2 GRLHQIAMRDPTDKYDLPDHLSWQMNMAVDHNEVSRNAKGILGETFTPTRDANGKAIMAGMEAIRGQQEHYRVKG 226
            GRLHQIAMRDPTD+YDLPDHL+WQMN+AVDHN+VS  AKGILGETF PTRDA+GK IM GMEAIRG +E  +  G
Sbjct:  230 GRLHQIAMRDPTDQYDLPDHLTWQMNLAVDHNQVSYAAKGILGETFVPTRDASGKPIMTGMEAIRGTEEDCKCGG 304
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BLAST of mRNA_Ecto-sp8_S_contig9404.30910.1 vs. uniprot
Match: A0A6H5JW46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW46_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 4.450e-28
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 2 
Query:    2 GRLHQIAMRDPTDKYDLPDHLSWQMNMAVDHNEVSRNAKGILGETFTPTRDANGKAIMAGMEAIRGQQEHYRVKGALGTDFIQD 253
            GRLHQIA RDPT+++DLPDH +WQMNM +DHNEVS +A GILGET TPT+DA G+ IM GMEAIRG +E YRV G L   F  D
Sbjct:  298 GRLHQIATRDPTNRFDLPDHTTWQMNMGIDHNEVSYSATGILGETSTPTKDAYGQDIMTGMEAIRGSEEDYRVAGPLDVTFPMD 381
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BLAST of mRNA_Ecto-sp8_S_contig9404.30910.1 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.370e-22
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 2 
Query:    2 GRLHQIAMRDPTDKYDLPDHLSWQMNMAVDHNEVSRNAKGILGETFTPTRDANGKAIMAGMEAIRGQQEHYRVKGALGTDFI 247
            GRLHQ+AMRDPTD++D+PDHL+WQMN+A D+ +++ +A GILGET   T DANG  IM GM AIRG QE Y V G L   F+
Sbjct:  353 GRLHQLAMRDPTDRFDIPDHLTWQMNLAFDNVDLAVDATGILGETQQHTLDANGNPIMEGMAAIRGSQEDYLVDGPLDNVFV 434
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BLAST of mRNA_Ecto-sp8_S_contig9404.30910.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 4.570e-22
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 2 
Query:    2 GRLHQIAMRDPTDKYDLPDHLSWQMNMAVDHNEVSRNAKGILGETFTPTRDANGKAIMAGMEAIRGQQEHYRVKGALGTDF 244
            GRLHQIA      ++ LPDH++WQMN+AVDHN+VS NAKG+LGET  PTR  +G+ IM GMEAIRG QE Y V+G LG DF
Sbjct:  993 GRLHQIA------QFGLPDHMTWQMNLAVDHNDVSLNAKGVLGETMVPTRTVSGEYIMHGMEAIRGTQEDYHVEGPLGLDF 1067
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BLAST of mRNA_Ecto-sp8_S_contig9404.30910.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 8.530e-19
Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = 2 
Query:    2 GRLHQIAMRDPTDKYDLPDHLSWQMNMAVDHNEVSRNAKGILGETFTPTRDANGKAIMAGMEAIRGQQEHYRVKGALGTDF 244
            GR HQIA      +  LPDH++WQMN+AVDHN+VS +AKG+LGET  PTR A+G+ +M GMEAIRG +E Y V G LG  F
Sbjct:  811 GRRHQIA------ELGLPDHVTWQMNLAVDHNDVSLSAKGVLGETLIPTRAASGEYVMHGMEAIRGTEEDYHVDGPLGLGF 885
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BLAST of mRNA_Ecto-sp8_S_contig9404.30910.1 vs. uniprot
Match: D7FUC7_ECTSI (Imm upregulated 13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC7_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.860e-17
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 2 
Query:   74 MNMAVDHNEVSRNAKGILGETFTPTRDANGKAIMAGMEAIRGQQEHYRVKGALGTDFIQD 253
            MNM +DHNEVS +A GILGET TPT+DANG+ IM GMEAIRG +E YRV G L   F  D
Sbjct:    1 MNMGIDHNEVSYSATGILGETSTPTKDANGEDIMTGMEAIRGSEEDYRVTGPLDVTFAMD 60
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BLAST of mRNA_Ecto-sp8_S_contig9404.30910.1 vs. uniprot
Match: A0A6H5KRS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS2_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.020e-14
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 2 
Query:    2 GRLHQIAMRDPTDKYDLPDHLSWQMNMAVDHNEVSRNAKGILGETFTPTRDANGKAIMAGMEAIRGQQE 208
            GRLHQIA      +Y LPDH +WQMN+A+D + V   A+G+LGET  PTRDA+G+ +M GME+IRG QE
Sbjct:  270 GRLHQIA------QYGLPDHSTWQMNLAIDSDSVGVGAQGVLGETLVPTRDADGEYVMHGMESIRGTQE 332
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9404.30910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KVF3_9PHAE4.660e-3474.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5Y7_9PHAE6.810e-2977.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW46_9PHAE4.450e-2867.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7V7_9PHAE3.370e-2260.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF50_9PHAE4.570e-2264.20LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5JRC1_9PHAE8.530e-1959.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUC7_ECTSI2.860e-1766.67Imm upregulated 13 n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KRS2_9PHAE1.020e-1457.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9404contigEcto-sp8_S_contig9404:3544..5965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1692
Hectar predicted targeting categoryother localisation
Exons3
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145297.5913765-UTR-Ecto-sp8_S_contig9404:3543..49131681145297.5913765-UTR-Ecto-sp8_S_contig9404:3543..4913Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9404 3544..4913 -
1681145297.6549168-UTR-Ecto-sp8_S_contig9404:5943..59651681145297.6549168-UTR-Ecto-sp8_S_contig9404:5943..5965Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9404 5944..5965 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145297.6054895-CDS-Ecto-sp8_S_contig9404:4913..50231681145297.6054895-CDS-Ecto-sp8_S_contig9404:4913..5023Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9404 4914..5023 -
1681145297.6186585-CDS-Ecto-sp8_S_contig9404:5567..56791681145297.6186585-CDS-Ecto-sp8_S_contig9404:5567..5679Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9404 5568..5679 -
1681145297.6395025-CDS-Ecto-sp8_S_contig9404:5865..59431681145297.6395025-CDS-Ecto-sp8_S_contig9404:5865..5943Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9404 5866..5943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9404.30910.1prot_Ecto-sp8_S_contig9404.30910.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9404 4914..5943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9404.30910.1

>prot_Ecto-sp8_S_contig9404.30910.1 ID=prot_Ecto-sp8_S_contig9404.30910.1|Name=mRNA_Ecto-sp8_S_contig9404.30910.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=100bp
MRDPTDKYDLPDHLSWQMNMAVDHNEVSRNAKGILGETFTPTRDANGKAI
MAGMEAIRGQQEHYRVKGALGTDFIQDGHLINQERHGYPPFPRQRGRRM*
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mRNA from alignment at Ecto-sp8_S_contig9404:3544..5965-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9404.30910.1 ID=mRNA_Ecto-sp8_S_contig9404.30910.1|Name=mRNA_Ecto-sp8_S_contig9404.30910.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2422bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9404:3544..5965- (Ectocarpus species8 EcLAC_412)
CGGCAGGCTTCACCAAATCGCCATGCGCGACCCTACGGACAAGTACGATC
TCCCCGATCACCTCAGCTGGCAGATGAACATGGCCGTTGACCACAATGAG
GTATGCGTCGGCGGGTACAATCAGTTGGTACCGTTTGACACCCAGTGAGC
AGGCAGCTGTAGTTTATATGTGGAGAGATGAAGCATTGTGTGGGGTTGAA
AGAAGACGTTGCAGGTAGATGTTTGTAGACTGTAAGAAGTACCTTCACAA
TTACTCCCCGGCCGTCCGGTGAACTGTCACGCACAGGTCAGCCGCAATGC
CAAAGGTATTCTTGGCGAAACGTTCACTCCGACGCGTGACGCCAACGGCA
AGGCGATCATGGCCGGAATGGAGGCAATCCGAGGACAGCAGGAGCACTGT
AAGACACCCGAGAGCACACCCTGGGTAGATGCTATGGCCCTGCTGTCATG
GGCCCCGTCCAGCTACCGATGCTTGCTCTTCCAAGACGTGAAACCTCTAC
AAAATTCGCTCAACTTTGACTATCGGGCAGGTTTGCCAGCCTTTCAACAC
CCGCACCTACCATACGGGTAGTTGACATCCGAACGAACAGGGGCGATGTG
AAATACGACGACGAATGACACTTGGAATGTCACGCGCAAGTTATTTCTAC
TCGGAACGTTCTTCACCTCGTGGGTCTGTTCGTGTAGGATCACTGCCCGT
GATACGACCTAACTAAGCACCGCACACCTCAACCCACCTCCCATTGGCAT
TTCCTGGTGGAGTCGTTCGAGTCACAGTGTCCGATTGCGGAGGTACTGGT
CTGTGTCGTTTTGTCCTCTTGGGTGACATATAGAATTTTCTGTGTCGAGA
ATTTCCGCCTCCAGTTTCACGATTTTCCTCAAATCAGTAATCCCTGCGCC
TCTTGTGCCATTTAATTCCCGGCTTTCTCTGTGGTTTGGCAGACCGCGTT
AAGGGGGCGTTGGGCACGGACTTCATTCAAGATGGGCATTTAATCAACCA
GGAGCGGCATGGTTACCCACCATTTCCCCGGCAACGTGGAAGGAGGATGT
AGTCAACTGGTTGGCACCACGGGGCTATGATGATGGACTGTGGGCATTAC
ATTTCGTTCTCCTTAGTTCGGGGGACTTTAACAGTTTGCCAGGCAAACGA
GAAACAGCGGCACGCTTTTGAGATCGGAGAGGCTGCCAAAAGAGAGCGTT
AGTTTTGGGATCTACAGGGGTTTGCCATCGTTTGAGGATGGGGACAGCTC
TGGAGGCACGGGTGGCGGCCAAGCTCTGGGAACGAATGAAAACGGGTTCC
GCGTTGGAGTAAAGGCCTTGAGTTCAAACGCGTTCGTTCGGCGGCAAATC
GTCTTCATGTTCTACACCGGCCAGTTTAGTTGAACAGGAGAAGAATGTTT
CGTGGTTTCGTTATCGCCGTCCACAGTCGCACGCACCTGATTCTTTCGTT
GTTTGTCTCTTCGTTCTGTTTGCCCCGTTTGCCCCCAAGGGCGGAGTATG
AGAGGTTGTTGCTCGTCGTCTAATCCATCGTGTTAGGTTCCGCCGTCTTT
CACAGAGGTGGTATTTTATGAAGACACTTGACTACCGTAGACGACACAAG
ATTTCACCCCGGTGATAACACGTTGGGCTTTAAAAATATTATCACCGGGT
GTGGTATCCTGTGGGGGGTGTGGTATCTTATGTAGCTCGGGTGATAAAGT
GCAGCTCGCTTGGGCCCTTAAGGGTGTGTGATAAAACAAGGGTGTGTGAT
AGGACGTCCGAACACACACGGGGCGTGTTTGGGGTGTGATAAATGAGGGG
GTTAAGCGGGTGTGCTAGCACGTCCGAATACCCACAGGGTGTGTTTGGGG
TGTGATACTGACGGGGTGTGATAAAAAGGTGTTATAGCACTTCTTGTAGA
GTTGAATCGCTGCTGCCGCACACTTGGTTGGTATTGCGGGGGTGTGATGG
CAATGCCTGTACGAACACTTCATGTCTTGTGGTTCTGCGGAATGTGGTAA
AACAAAGGAGCTCAACGGAGGTGACGTTCTCCTGACCACATGACTCGGTG
GCCACAGAGTGCGCCATCCGTCCTGCCCCCTCGCACAAAAAAGTAGGCTC
CTGCATACCTTGCTATTGGTACGACCAAAAGAGTGTTACGCAGATGTTTT
GTGTGTGAGATACCCACATGCCCAAGCGGCAGATGTTGTATCACCCCGGT
GATAGACGGAGGAGCCTGCGGCGTAACCTCAAGGGGTGTGCTATCTTATG
TAGCGCCGGTGATAAATCGATGGTTTGTCAGAAACGCCCAAAATTATCAC
CGGGTGTCGTATTCTGTGGGGGGTGTGGTTTCTATGTGGGTGTGTTATCT
TGCGTCGTCTACGGTAGGGTGATTCTTCTTGTGGTTTGACAGGTTGAGAG
GTTTCGAGGAAAAGGTTTGATG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9404:3544..5965-

>mRNA_Ecto-sp8_S_contig9404.30910.1 ID=mRNA_Ecto-sp8_S_contig9404.30910.1|Name=mRNA_Ecto-sp8_S_contig9404.30910.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9404:3544..5965- (Ectocarpus species8 EcLAC_412)
ATGCGCGACCCTACGGACAAGTACGATCTCCCCGATCACCTCAGCTGGCA
GATGAACATGGCCGTTGACCACAATGAGGTCAGCCGCAATGCCAAAGGTA
TTCTTGGCGAAACGTTCACTCCGACGCGTGACGCCAACGGCAAGGCGATC
ATGGCCGGAATGGAGGCAATCCGAGGACAGCAGGAGCACTACCGCGTTAA
GGGGGCGTTGGGCACGGACTTCATTCAAGATGGGCATTTAATCAACCAGG
AGCGGCATGGTTACCCACCATTTCCCCGGCAACGTGGAAGGAGGATGTAG
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